Wall clock time and date at job start Fri Apr 10 2020 18:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63716 * 2 1 4 4 C 1.54325 * 110.87403 * 236.75172 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.38314 * 4 2 1 6 6 C 1.34774 * 125.79121 * 178.92556 * 5 4 2 7 7 O 1.21280 * 120.00501 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99753 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47102 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.43976 * 54.29264 * 9 8 6 11 11 C 1.54631 * 110.48626 * 176.83667 * 9 8 6 12 12 C 1.54695 * 101.66747 * 143.39173 * 11 9 8 13 13 N 1.46758 * 105.53563 * 334.74093 * 12 11 9 14 14 C 1.46506 * 124.34978 * 196.90051 * 13 12 11 15 15 C 1.34425 * 111.30004 * 16.92251 * 13 12 11 16 16 O 1.21278 * 124.94031 * 179.55661 * 15 13 12 17 17 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 18 18 C 1.54908 * 104.92961 * 24.15407 * 17 5 4 19 19 H 1.09008 * 111.00494 * 81.01141 * 18 17 5 20 20 N 1.46496 * 111.00674 * 204.86080 * 18 17 5 21 21 C 1.36940 * 120.00174 * 273.55140 * 20 18 17 22 22 H 1.08003 * 119.99978 * 359.97438 * 21 20 18 23 23 C 1.38805 * 120.00135 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00135 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00002 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46862 * 90.00609 * 25 23 21 27 27 H 1.48504 * 109.47369 * 210.00040 * 25 23 21 28 28 H 1.48496 * 109.47052 * 330.00325 * 25 23 21 29 29 H 1.08999 * 109.47394 * 296.85917 * 1 2 3 30 30 H 1.09001 * 109.47080 * 56.85884 * 1 2 3 31 31 H 1.08999 * 109.46882 * 176.85698 * 1 2 3 32 32 H 1.09004 * 109.88239 * 338.79110 * 4 2 1 33 33 H 1.08995 * 109.88239 * 99.80032 * 4 2 1 34 34 H 1.09001 * 109.47204 * 299.99785 * 8 6 5 35 35 H 1.09000 * 109.47543 * 59.99762 * 8 6 5 36 36 H 1.09002 * 110.97177 * 261.58995 * 11 9 8 37 37 H 1.08999 * 110.97072 * 25.36151 * 11 9 8 38 38 H 1.08997 * 110.29513 * 215.67988 * 12 11 9 39 39 H 1.09003 * 110.13881 * 93.72310 * 12 11 9 40 40 H 1.08998 * 109.46848 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.46763 * 299.99679 * 14 13 12 42 42 H 1.08996 * 109.46878 * 59.99892 * 14 13 12 43 43 H 1.09002 * 110.36696 * 265.26054 * 17 5 4 44 44 H 1.08995 * 110.36608 * 143.04891 * 17 5 4 45 45 H 0.97000 * 120.00071 * 93.54813 * 20 18 17 46 46 H 0.96995 * 120.00222 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2516 -1.5489 -0.7352 6 6 4.0034 -2.3816 -1.4820 7 8 3.7345 -2.5573 -2.6515 8 6 5.1784 -3.0946 -0.8637 9 6 5.8555 -3.9715 -1.9188 10 1 6.1182 -3.3787 -2.7950 11 6 7.1124 -4.6534 -1.3302 12 6 7.0682 -6.0382 -2.0183 13 7 5.6574 -6.2667 -2.3516 14 6 5.0888 -7.5743 -2.6881 15 6 4.9540 -5.1220 -2.3089 16 8 3.7691 -5.0255 -2.5490 17 6 3.4652 -1.2446 0.6914 18 6 2.0789 -0.7933 1.2151 19 1 1.4468 -1.6529 1.4384 20 7 2.2174 0.0728 2.3885 21 6 2.3128 -0.4780 3.6387 22 1 2.2855 -1.5508 3.7596 23 6 2.4434 0.3427 4.7505 24 7 2.5356 -0.1867 5.9520 25 14 2.4898 2.1984 4.5414 26 1 1.1087 2.7393 4.6135 27 1 3.3132 2.7979 5.6221 28 1 3.0844 2.5331 3.2224 29 1 -0.3634 0.4643 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0261 -0.0563 32 1 1.3191 -1.4773 -1.5770 33 1 2.3750 -0.1017 -1.9974 34 1 5.8918 -2.3611 -0.4881 35 1 4.8322 -3.7193 -0.0404 36 1 8.0160 -4.1084 -1.6034 37 1 7.0311 -4.7535 -0.2479 38 1 7.4247 -6.8105 -1.3367 39 1 7.6729 -6.0261 -2.9251 40 1 4.0237 -7.4656 -2.8925 41 1 5.5898 -7.9720 -3.5707 42 1 5.2299 -8.2581 -1.8511 43 1 4.1929 -0.4409 0.8030 44 1 3.8001 -2.1352 1.2232 45 1 2.2416 1.0364 2.2799 46 1 2.6265 0.3868 6.7290 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082580704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:01 Heat of formation + Delta-G solvation = -48.740032 kcal Electronic energy + Delta-G solvation = -26315.697817 eV Core-core repulsion = 22626.727410 eV Total energy + Delta-G solvation = -3688.970406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76437 -39.51361 -37.51978 -36.37395 -34.16457 -33.88764 -32.50295 -31.06921 -29.96262 -27.84385 -27.16041 -26.62808 -24.84940 -23.70136 -21.79394 -21.29985 -20.12268 -19.64236 -18.72745 -17.56797 -17.17143 -16.70243 -16.38666 -16.07304 -15.35428 -15.14437 -14.66175 -14.27570 -13.93197 -13.71807 -13.60335 -13.25939 -13.18622 -13.06129 -12.80863 -12.75811 -12.62497 -12.44301 -12.25241 -12.04128 -11.83388 -11.75209 -11.54153 -11.38859 -11.17260 -11.09944 -10.77772 -10.61270 -10.37308 -9.95884 -9.72369 -9.66437 -9.41915 -9.04427 -8.84902 -8.25395 -7.39629 -5.85983 -3.23751 2.63109 2.87807 3.00340 3.26852 3.31428 3.34575 3.40575 4.15209 4.19911 4.47494 4.50892 4.64697 4.83483 4.96995 5.02484 5.04975 5.11583 5.14700 5.21994 5.25712 5.28383 5.42671 5.47736 5.51291 5.52325 5.56008 5.64092 5.73385 5.76169 5.81072 5.88599 5.94313 6.14496 6.17850 6.32287 6.36585 6.37749 6.49207 6.60829 6.79089 6.98785 7.87177 7.89905 8.22604 8.32770 8.53405 9.09681 9.81836 10.00495 11.31741 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.003348 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.471846 B = 8360.547336 C = 9197.519416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 H 0.081 0.919 4 C 0.120 3.880 5 N -0.619 5.619 6 C 0.525 3.475 7 O -0.528 6.528 8 C -0.120 4.120 9 C -0.106 4.106 10 H 0.114 0.886 11 C -0.131 4.131 12 C 0.105 3.895 13 N -0.634 5.634 14 C 0.095 3.905 15 C 0.518 3.482 16 O -0.498 6.498 17 C 0.075 3.925 18 C 0.182 3.818 19 H 0.073 0.927 20 N -0.736 5.736 21 C -0.251 4.251 22 H 0.092 0.908 23 C 0.010 3.990 24 N -0.930 5.930 25 Si 0.883 3.117 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.364 0.636 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.453 -8.993 -16.115 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.136 4.136 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.354 5.354 6 C 0.313 3.687 7 O -0.404 6.404 8 C -0.160 4.160 9 C -0.128 4.128 10 H 0.132 0.868 11 C -0.168 4.168 12 C -0.018 4.018 13 N -0.371 5.371 14 C -0.046 4.046 15 C 0.304 3.696 16 O -0.370 6.370 17 C -0.051 4.051 18 C 0.070 3.930 19 H 0.091 0.909 20 N -0.377 5.377 21 C -0.381 4.381 22 H 0.110 0.890 23 C -0.187 4.187 24 N -0.577 5.577 25 Si 0.713 3.287 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.202 1.202 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.197 0.803 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.664 -9.321 -16.714 21.008 hybrid contribution 0.285 1.264 0.139 1.303 sum 8.949 -8.057 -16.575 20.487 Atomic orbital electron populations 1.21683 0.93817 1.01960 1.01890 1.22504 0.96601 0.99579 0.94945 0.90085 1.21926 0.87723 0.94310 0.96357 1.48519 1.30044 1.44654 1.12188 1.20041 0.83606 0.78760 0.86273 1.90714 1.70747 1.62641 1.16296 1.21499 0.96620 0.99363 0.98516 1.21723 0.94984 0.95781 1.00331 0.86777 1.22759 0.97965 0.94756 1.01357 1.22054 0.82182 0.97809 0.99785 1.48185 1.10073 1.08173 1.70693 1.21501 1.00196 0.82978 0.99973 1.20762 0.87742 0.84364 0.76728 1.90786 1.14342 1.84268 1.47621 1.23358 1.01891 1.00828 0.79054 1.21331 0.92244 0.93642 0.85759 0.90899 1.42646 1.88731 1.03898 1.02454 1.19060 1.43311 0.93986 0.81696 0.89036 1.24669 1.01531 0.97391 0.95097 1.69696 1.56299 1.34229 0.97442 0.86579 0.77847 0.87172 0.77069 1.20965 1.21688 1.20245 0.91525 0.93074 0.92526 0.91610 0.92156 0.87910 0.88658 0.88846 0.89440 0.90405 0.91287 0.90005 0.92421 0.92275 0.91406 0.91028 0.80259 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.17 37.16 0.34 -1.55 16 2 C -0.12 -1.78 3.16 -88.79 -0.28 -2.06 16 3 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 4 C 0.12 1.86 6.49 -2.92 -0.02 1.84 16 5 N -0.62 -10.08 3.34 -170.31 -0.57 -10.65 16 6 C 0.53 8.71 7.30 -10.99 -0.08 8.63 16 7 O -0.53 -10.45 14.20 -16.80 -0.24 -10.68 16 8 C -0.12 -1.48 4.11 -27.89 -0.11 -1.60 16 9 C -0.11 -1.18 2.55 -90.63 -0.23 -1.41 16 10 H 0.11 1.30 7.96 -51.93 -0.41 0.88 16 11 C -0.13 -0.89 6.72 -24.98 -0.17 -1.06 16 12 C 0.10 0.71 7.35 -3.01 -0.02 0.69 16 13 N -0.63 -6.68 3.33 -180.15 -0.60 -7.28 16 14 C 0.10 0.82 11.14 59.85 0.67 1.49 16 15 C 0.52 7.34 7.29 -10.86 -0.08 7.26 16 16 O -0.50 -9.47 14.72 -16.79 -0.25 -9.72 16 17 C 0.07 1.24 6.38 -2.53 -0.02 1.22 16 18 C 0.18 3.31 3.13 -65.79 -0.21 3.11 16 19 H 0.07 1.41 8.04 -51.92 -0.42 1.00 16 20 N -0.74 -16.14 5.08 -51.35 -0.26 -16.40 16 21 C -0.25 -6.64 10.47 -15.06 -0.16 -6.80 16 22 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 23 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 24 N -0.93 -28.07 13.97 55.49 0.78 -27.29 16 25 Si 0.88 21.08 27.73 -169.99 -4.71 16.36 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.07 1.05 7.78 -51.93 -0.40 0.64 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 1.18 7.84 -51.93 -0.41 0.77 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.56 7.91 -51.93 -0.41 0.15 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.85 7.53 -51.93 -0.39 0.46 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.18 7.47 -51.93 -0.39 0.79 16 45 H 0.36 7.87 5.57 -40.82 -0.23 7.64 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -35.25 367.83 -8.49 -43.74 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.71 Total: 6.47 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -0.46 Total: 9.92 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.65 Total: -61.62 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.49 Total: -20.41 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.71 Total: 16.36 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.25 -8.49 -43.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082580704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.005 kcal (2) G-P(sol) polarization free energy of solvation -35.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds