Wall clock time and date at job start Fri Apr 10 2020 18:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63716 * 2 1 4 4 C 1.54325 * 110.87403 * 236.75172 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.38314 * 4 2 1 6 6 C 1.34774 * 125.79121 * 178.92556 * 5 4 2 7 7 O 1.21280 * 120.00501 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99753 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47102 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.43976 * 54.29264 * 9 8 6 11 11 C 1.54631 * 110.48626 * 176.83667 * 9 8 6 12 12 C 1.54695 * 101.66747 * 143.39173 * 11 9 8 13 13 N 1.46758 * 105.53563 * 334.74093 * 12 11 9 14 14 C 1.46506 * 124.34978 * 196.90051 * 13 12 11 15 15 C 1.34425 * 111.30004 * 16.92251 * 13 12 11 16 16 O 1.21278 * 124.94031 * 179.55661 * 15 13 12 17 17 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 18 18 C 1.54908 * 104.92961 * 24.15407 * 17 5 4 19 19 H 1.09008 * 111.00494 * 81.01141 * 18 17 5 20 20 N 1.46496 * 111.00674 * 204.86080 * 18 17 5 21 21 C 1.36940 * 120.00174 * 273.55140 * 20 18 17 22 22 H 1.08003 * 119.99978 * 359.97438 * 21 20 18 23 23 C 1.38805 * 120.00135 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00135 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00002 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46862 * 90.00609 * 25 23 21 27 27 H 1.48504 * 109.47369 * 210.00040 * 25 23 21 28 28 H 1.48496 * 109.47052 * 330.00325 * 25 23 21 29 29 H 1.08999 * 109.47394 * 296.85917 * 1 2 3 30 30 H 1.09001 * 109.47080 * 56.85884 * 1 2 3 31 31 H 1.08999 * 109.46882 * 176.85698 * 1 2 3 32 32 H 1.09004 * 109.88239 * 338.79110 * 4 2 1 33 33 H 1.08995 * 109.88239 * 99.80032 * 4 2 1 34 34 H 1.09001 * 109.47204 * 299.99785 * 8 6 5 35 35 H 1.09000 * 109.47543 * 59.99762 * 8 6 5 36 36 H 1.09002 * 110.97177 * 261.58995 * 11 9 8 37 37 H 1.08999 * 110.97072 * 25.36151 * 11 9 8 38 38 H 1.08997 * 110.29513 * 215.67988 * 12 11 9 39 39 H 1.09003 * 110.13881 * 93.72310 * 12 11 9 40 40 H 1.08998 * 109.46848 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.46763 * 299.99679 * 14 13 12 42 42 H 1.08996 * 109.46878 * 59.99892 * 14 13 12 43 43 H 1.09002 * 110.36696 * 265.26054 * 17 5 4 44 44 H 1.08995 * 110.36608 * 143.04891 * 17 5 4 45 45 H 0.97000 * 120.00071 * 93.54813 * 20 18 17 46 46 H 0.96995 * 120.00222 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2516 -1.5489 -0.7352 6 6 4.0034 -2.3816 -1.4820 7 8 3.7345 -2.5573 -2.6515 8 6 5.1784 -3.0946 -0.8637 9 6 5.8555 -3.9715 -1.9188 10 1 6.1182 -3.3787 -2.7950 11 6 7.1124 -4.6534 -1.3302 12 6 7.0682 -6.0382 -2.0183 13 7 5.6574 -6.2667 -2.3516 14 6 5.0888 -7.5743 -2.6881 15 6 4.9540 -5.1220 -2.3089 16 8 3.7691 -5.0255 -2.5490 17 6 3.4652 -1.2446 0.6914 18 6 2.0789 -0.7933 1.2151 19 1 1.4468 -1.6529 1.4384 20 7 2.2174 0.0728 2.3885 21 6 2.3128 -0.4780 3.6387 22 1 2.2855 -1.5508 3.7596 23 6 2.4434 0.3427 4.7505 24 7 2.5356 -0.1867 5.9520 25 14 2.4898 2.1984 4.5414 26 1 1.1087 2.7393 4.6135 27 1 3.3132 2.7979 5.6221 28 1 3.0844 2.5331 3.2224 29 1 -0.3634 0.4643 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0261 -0.0563 32 1 1.3191 -1.4773 -1.5770 33 1 2.3750 -0.1017 -1.9974 34 1 5.8918 -2.3611 -0.4881 35 1 4.8322 -3.7193 -0.0404 36 1 8.0160 -4.1084 -1.6034 37 1 7.0311 -4.7535 -0.2479 38 1 7.4247 -6.8105 -1.3367 39 1 7.6729 -6.0261 -2.9251 40 1 4.0237 -7.4656 -2.8925 41 1 5.5898 -7.9720 -3.5707 42 1 5.2299 -8.2581 -1.8511 43 1 4.1929 -0.4409 0.8030 44 1 3.8001 -2.1352 1.2232 45 1 2.2416 1.0364 2.2799 46 1 2.6265 0.3868 6.7290 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082580704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:01 Heat of formation + Delta-G solvation = -72.429038 kcal Electronic energy + Delta-G solvation = -26316.725049 eV Core-core repulsion = 22626.727410 eV Total energy + Delta-G solvation = -3689.997639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74674 -40.75644 -38.89505 -37.37868 -35.93222 -34.79365 -33.93852 -32.89417 -30.80627 -29.41497 -28.02480 -27.60994 -25.90957 -25.40337 -22.90365 -22.42177 -21.57375 -20.72196 -19.86190 -19.47923 -18.11782 -17.82012 -17.50052 -17.26156 -16.53814 -16.31705 -16.11027 -15.75165 -15.01433 -14.81718 -14.71867 -14.65545 -14.54797 -14.38407 -14.10226 -13.93758 -13.44954 -13.42433 -13.23127 -13.17969 -13.14077 -12.96993 -12.89668 -12.70387 -12.36648 -12.24817 -12.07330 -11.93237 -11.83708 -11.78516 -11.38786 -11.03607 -10.87470 -10.56349 -9.65484 -9.64311 -9.30688 -7.99437 -5.35141 1.42993 1.45783 1.52767 1.60978 1.72900 2.03005 2.13916 2.51644 3.24023 3.30535 3.41698 3.50018 3.66276 3.78039 3.86975 3.92685 4.04516 4.20874 4.29240 4.34855 4.38195 4.40164 4.43900 4.55799 4.57731 4.59563 4.69629 4.75199 4.82391 4.83570 4.86032 4.91524 5.06472 5.07987 5.09744 5.21202 5.23137 5.34526 5.42860 5.64692 5.79592 6.14035 6.23591 6.57892 7.08543 7.21617 7.29214 7.81802 8.02627 9.21472 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.003348 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.471846 B = 8360.547336 C = 9197.519416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 H 0.094 0.906 4 C 0.119 3.881 5 N -0.622 5.622 6 C 0.516 3.484 7 O -0.563 6.563 8 C -0.116 4.116 9 C -0.105 4.105 10 H 0.110 0.890 11 C -0.118 4.118 12 C 0.099 3.901 13 N -0.633 5.633 14 C 0.090 3.910 15 C 0.499 3.501 16 O -0.563 6.563 17 C 0.087 3.913 18 C 0.173 3.827 19 H 0.055 0.945 20 N -0.734 5.734 21 C -0.231 4.231 22 H 0.059 0.941 23 C -0.057 4.057 24 N -0.981 5.981 25 Si 0.951 3.049 26 H -0.281 1.281 27 H -0.299 1.299 28 H -0.246 1.246 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.370 0.630 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.647 -8.168 -17.297 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 H 0.112 0.888 4 C -0.004 4.004 5 N -0.356 5.356 6 C 0.306 3.694 7 O -0.441 6.441 8 C -0.155 4.155 9 C -0.127 4.127 10 H 0.128 0.872 11 C -0.155 4.155 12 C -0.022 4.022 13 N -0.368 5.368 14 C -0.052 4.052 15 C 0.287 3.713 16 O -0.441 6.441 17 C -0.038 4.038 18 C 0.063 3.937 19 H 0.073 0.927 20 N -0.377 5.377 21 C -0.362 4.362 22 H 0.077 0.923 23 C -0.249 4.249 24 N -0.631 5.631 25 Si 0.779 3.221 26 H -0.208 1.208 27 H -0.226 1.226 28 H -0.171 1.171 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.204 0.796 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.907 -8.529 -17.950 22.669 hybrid contribution -0.417 0.837 0.433 1.030 sum 10.491 -7.692 -17.517 21.819 Atomic orbital electron populations 1.21671 0.92775 1.02130 1.02523 1.22434 0.97438 0.99547 0.92806 0.88793 1.21960 0.87461 0.94278 0.96660 1.48611 1.30282 1.44802 1.11921 1.20833 0.84321 0.78266 0.85954 1.90696 1.71863 1.63589 1.17991 1.21582 0.95585 0.99792 0.98588 1.21758 0.96115 0.94739 1.00093 0.87200 1.22834 0.96731 0.94346 1.01613 1.22396 0.79959 0.98529 1.01347 1.48427 1.11543 1.07793 1.69009 1.21641 0.98895 0.82731 1.01915 1.21423 0.87413 0.86230 0.76229 1.90739 1.17114 1.85487 1.50789 1.23087 1.00607 1.00971 0.79183 1.21437 0.93265 0.93255 0.85764 0.92694 1.42512 1.88836 1.04465 1.01847 1.18974 1.41036 0.92634 0.83581 0.92325 1.25444 1.02335 1.02473 0.94662 1.69876 1.58812 1.36008 0.98448 0.85471 0.77773 0.80862 0.78018 1.20764 1.22598 1.17075 0.92487 0.90534 0.92927 0.92493 0.91089 0.85026 0.88794 0.85772 0.88651 0.87924 0.89304 0.92750 0.90110 0.90137 0.90630 0.91153 0.79590 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.17 71.98 0.66 -2.85 16 2 C -0.10 -2.97 3.16 -9.61 -0.03 -3.00 16 3 H 0.09 2.53 8.00 -2.39 -0.02 2.51 16 4 C 0.12 3.58 6.49 86.68 0.56 4.14 16 5 N -0.62 -19.82 3.34 -811.12 -2.71 -22.52 16 6 C 0.52 17.02 7.30 87.66 0.64 17.66 16 7 O -0.56 -22.70 14.20 18.34 0.26 -22.43 16 8 C -0.12 -2.72 4.11 29.85 0.12 -2.60 16 9 C -0.11 -2.19 2.55 -10.80 -0.03 -2.22 16 10 H 0.11 2.38 7.96 -2.39 -0.02 2.36 16 11 C -0.12 -1.19 6.72 31.73 0.21 -0.98 16 12 C 0.10 1.00 7.35 86.91 0.64 1.64 16 13 N -0.63 -12.49 3.33 -842.47 -2.81 -15.30 16 14 C 0.09 1.47 11.14 127.77 1.42 2.89 16 15 C 0.50 14.22 7.29 87.90 0.64 14.86 16 16 O -0.56 -22.56 14.72 18.35 0.27 -22.29 16 17 C 0.09 2.80 6.38 86.85 0.55 3.35 16 18 C 0.17 6.18 3.13 46.38 0.15 6.33 16 19 H 0.06 2.17 8.04 -2.38 -0.02 2.15 16 20 N -0.73 -31.36 5.08 -316.38 -1.61 -32.96 16 21 C -0.23 -12.34 10.47 84.03 0.88 -11.46 16 22 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 23 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 24 N -0.98 -60.55 13.97 21.65 0.30 -60.25 16 25 Si 0.95 42.94 27.73 68.60 1.90 44.84 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.25 -9.79 6.52 99.48 0.65 -9.14 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.41 8.07 -2.39 -0.02 1.39 16 32 H 0.06 1.81 7.78 -2.38 -0.02 1.79 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.25 7.84 -2.39 -0.02 2.23 16 36 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 0.86 7.91 -2.39 -0.02 0.84 16 38 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 1.19 7.53 -2.39 -0.02 1.18 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.07 2.27 7.47 -2.39 -0.02 2.25 16 45 H 0.37 15.03 5.57 -92.71 -0.52 14.52 16 46 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -80.47 367.83 2.89 -77.57 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.39 Total: 28.32 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 6.89 Total: 25.03 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -6.82 Total: -131.04 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: 0.53 Total: -44.73 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.90 Total: 44.84 kcal Total: -80.47 2.89 -77.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082580704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.144 kcal (2) G-P(sol) polarization free energy of solvation -80.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds