Wall clock time and date at job start Fri Apr 10 2020 18:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.91753 * 2 1 4 4 C 1.54909 * 111.00668 * 236.10036 * 2 1 3 5 5 N 1.47425 * 104.83569 * 204.91602 * 4 2 1 6 6 C 1.34775 * 125.64930 * 204.16385 * 5 4 2 7 7 O 1.21277 * 120.00245 * 354.35773 * 6 5 4 8 8 C 1.50704 * 119.99753 * 174.36312 * 6 5 4 9 9 C 1.52992 * 109.67209 * 295.65664 * 8 6 5 10 10 C 1.53340 * 109.67113 * 175.15446 * 8 6 5 11 11 C 1.52919 * 108.67434 * 172.73428 * 10 8 6 12 12 N 1.45758 * 110.48621 * 50.75294 * 11 10 8 13 13 C 1.33351 * 124.10829 * 340.95247 * 12 11 10 14 14 O 1.21275 * 118.24590 * 182.17340 * 13 12 11 15 15 C 1.50170 * 123.50797 * 2.17360 * 13 12 11 16 16 C 1.47026 * 108.69993 * 24.12782 * 5 4 2 17 17 C 1.54321 * 107.27224 * 358.94070 * 16 5 4 18 18 H 1.09003 * 110.72149 * 96.34728 * 17 16 5 19 19 N 1.46495 * 110.72232 * 219.44443 * 17 16 5 20 20 C 1.36937 * 120.00033 * 273.54980 * 19 17 16 21 21 H 1.08000 * 120.00073 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00152 * 179.97438 * 20 19 17 23 23 N 1.31622 * 119.99792 * 0.27046 * 22 20 19 24 24 Si 1.86800 * 120.00091 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47187 * 89.99684 * 24 22 20 26 26 H 1.48501 * 109.46922 * 209.99878 * 24 22 20 27 27 H 1.48498 * 109.46945 * 329.99620 * 24 22 20 28 28 H 1.08996 * 109.47269 * 296.09606 * 1 2 3 29 29 H 1.09000 * 109.46871 * 56.09448 * 1 2 3 30 30 H 1.08998 * 109.47093 * 176.09144 * 1 2 3 31 31 H 1.09000 * 110.36593 * 86.07453 * 4 2 1 32 32 H 1.09007 * 110.36555 * 323.75696 * 4 2 1 33 33 H 1.09002 * 109.47565 * 65.94010 * 9 8 6 34 34 H 1.08997 * 109.47569 * 185.94853 * 9 8 6 35 35 H 1.09006 * 109.47166 * 305.94785 * 9 8 6 36 36 H 1.08997 * 109.60715 * 292.49308 * 10 8 6 37 37 H 1.09006 * 109.60372 * 52.98270 * 10 8 6 38 38 H 1.08999 * 109.30265 * 171.07006 * 11 10 8 39 39 H 1.08998 * 109.30052 * 290.44406 * 11 10 8 40 40 H 0.97003 * 117.94310 * 160.92641 * 12 11 10 41 41 H 1.08996 * 109.41728 * 222.31964 * 15 13 12 42 42 H 1.09001 * 109.38576 * 102.57961 * 15 13 12 43 43 H 1.08998 * 109.88143 * 239.51964 * 16 5 4 44 44 H 1.08998 * 110.00831 * 118.42977 * 16 5 4 45 45 H 0.97003 * 120.00224 * 93.54367 * 19 17 16 46 46 H 0.96997 * 120.00115 * 359.72317 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2430 -0.7734 6 6 4.4481 -1.5602 -1.5941 7 8 4.2730 -1.5968 -2.7936 8 6 5.8072 -1.8694 -1.0212 9 6 6.3724 -0.6242 -0.3350 10 6 6.7519 -2.3138 -2.1443 11 6 8.1641 -2.4458 -1.5727 12 7 8.1516 -3.2629 -0.3657 13 6 7.0598 -3.5090 0.3593 14 8 7.1782 -4.1713 1.3683 15 6 5.6916 -3.0100 -0.0067 16 6 3.4674 -1.2741 0.6960 17 6 2.0861 -0.8080 1.2022 18 1 1.4478 -1.6633 1.4238 19 7 2.2286 0.0495 2.3814 20 6 2.3033 -0.5094 3.6293 21 1 2.2569 -1.5823 3.7442 22 6 2.4388 0.3030 4.7467 23 7 2.4901 1.6108 4.6072 24 14 2.5400 -0.4594 6.4491 25 1 3.9602 -0.7347 6.7845 26 1 1.9689 0.4804 7.4470 27 1 1.7714 -1.7298 6.4690 28 1 -0.3633 0.4520 0.9229 29 1 -0.3633 0.5733 -0.8529 30 1 -0.3633 -1.0253 -0.0700 31 1 2.1559 -0.1719 -2.0837 32 1 1.4518 -1.6703 -1.4025 33 1 5.7607 -0.3784 0.5330 34 1 7.3960 -0.8187 -0.0149 35 1 6.3632 0.2118 -1.0345 36 1 6.4251 -3.2763 -2.5377 37 1 6.7481 -1.5700 -2.9411 38 1 8.8116 -2.9110 -2.3160 39 1 8.5499 -1.4550 -1.3330 40 1 8.9899 -3.6523 -0.0717 41 1 5.1863 -2.6482 0.8887 42 1 5.1138 -3.8250 -0.4426 43 1 4.2426 -0.5998 1.0599 44 1 3.6662 -2.2884 1.0422 45 1 2.2700 1.0131 2.2784 46 1 2.4372 2.0067 3.7233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082589704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:06 Heat of formation + Delta-G solvation = -55.037119 kcal Electronic energy + Delta-G solvation = -27358.469043 eV Core-core repulsion = 23669.225575 eV Total energy + Delta-G solvation = -3689.243469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26442 -39.61934 -37.94099 -36.61408 -34.51836 -34.10682 -32.43486 -30.69271 -29.85890 -28.12807 -27.49462 -26.50168 -24.82606 -23.80264 -22.84480 -21.57264 -20.12204 -19.32405 -18.64852 -17.49844 -17.38349 -16.82584 -16.31401 -15.97365 -15.68443 -15.11091 -14.93935 -14.76344 -14.27093 -14.05836 -13.76175 -13.60748 -13.40546 -13.05282 -12.90255 -12.83969 -12.47762 -12.31921 -12.17874 -11.89544 -11.68934 -11.48213 -11.18965 -11.14142 -10.97273 -10.85881 -10.61954 -10.56765 -10.33576 -10.13638 -10.04997 -9.52626 -9.26642 -9.25682 -9.01958 -8.45435 -7.20287 -6.20426 -3.23592 2.53034 2.63263 3.03013 3.11244 3.49910 3.53118 3.66875 4.17133 4.32938 4.42120 4.54442 4.59389 4.72765 4.89197 4.91387 5.01840 5.05554 5.08565 5.23881 5.34031 5.41495 5.50313 5.56161 5.58235 5.61802 5.63869 5.69154 5.70891 5.79592 5.84029 5.84808 5.98912 6.07219 6.15330 6.24383 6.39094 6.41512 6.47032 6.59910 6.73553 7.14065 7.63310 7.72349 8.08928 8.18026 8.65078 9.07620 9.94435 10.07196 11.27136 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.004989 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.475965 B = 5610.675424 C = 7307.008700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.082 0.918 4 C 0.114 3.886 5 N -0.608 5.608 6 C 0.539 3.461 7 O -0.549 6.549 8 C -0.075 4.075 9 C -0.154 4.154 10 C -0.111 4.111 11 C 0.109 3.891 12 N -0.722 5.722 13 C 0.527 3.473 14 O -0.551 6.551 15 C -0.140 4.140 16 C 0.059 3.941 17 C 0.182 3.818 18 H 0.068 0.932 19 N -0.722 5.722 20 C -0.340 4.340 21 H 0.068 0.932 22 C -0.037 4.037 23 N -0.939 5.939 24 Si 1.080 2.920 25 H -0.294 1.294 26 H -0.288 1.288 27 H -0.293 1.293 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.399 0.601 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.370 0.630 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 -5.755 -14.846 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.100 0.900 4 C -0.008 4.008 5 N -0.341 5.341 6 C 0.327 3.673 7 O -0.428 6.428 8 C -0.078 4.078 9 C -0.211 4.211 10 C -0.149 4.149 11 C -0.015 4.015 12 N -0.375 5.375 13 C 0.315 3.685 14 O -0.429 6.429 15 C -0.179 4.179 16 C -0.066 4.066 17 C 0.070 3.930 18 H 0.086 0.914 19 N -0.363 5.363 20 C -0.471 4.471 21 H 0.086 0.914 22 C -0.235 4.235 23 N -0.584 5.584 24 Si 0.910 3.090 25 H -0.221 1.221 26 H -0.214 1.214 27 H -0.220 1.220 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.234 0.766 41 H 0.141 0.859 42 H 0.120 0.880 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.204 0.796 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.943 -5.920 -13.363 16.181 hybrid contribution 0.296 -0.202 -1.633 1.672 sum 7.240 -6.122 -14.997 17.742 Atomic orbital electron populations 1.21608 0.93734 1.01717 1.02068 1.22638 0.96451 0.99639 0.94728 0.90012 1.22268 0.82836 0.98115 0.97611 1.48480 1.11890 1.65651 1.08036 1.19945 0.84835 0.76585 0.85913 1.90665 1.83900 1.53389 1.14804 1.20794 0.93462 0.97092 0.96474 1.22096 1.02019 0.95483 1.01500 1.21737 0.92399 1.03614 0.97178 1.21461 0.97972 0.95676 0.86418 1.45481 1.11212 1.53015 1.27779 1.19973 0.86530 0.79357 0.82688 1.90786 1.86263 1.40231 1.25615 1.22120 0.95143 0.98650 1.02019 1.23739 1.03563 1.01682 0.77606 1.21196 0.91582 0.93788 0.86471 0.91410 1.42363 1.88135 1.04361 1.01473 1.20068 1.48787 0.93324 0.84889 0.91444 1.25763 0.99764 0.95433 1.02588 1.70874 1.52790 1.09838 1.24884 0.83241 0.76349 0.74232 0.75177 1.22133 1.21354 1.21990 0.91451 0.93061 0.92693 0.90934 0.91508 0.90371 0.91062 0.91575 0.90398 0.88651 0.90209 0.91058 0.76585 0.85897 0.87970 0.90188 0.91386 0.79636 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.31 37.16 0.35 -1.44 16 2 C -0.11 -1.70 3.25 -88.47 -0.29 -1.98 16 3 H 0.08 1.27 8.00 -51.93 -0.42 0.85 16 4 C 0.11 1.59 6.36 -2.53 -0.02 1.58 16 5 N -0.61 -8.95 3.32 -170.52 -0.57 -9.51 16 6 C 0.54 7.86 6.56 -10.98 -0.07 7.79 16 7 O -0.55 -9.27 16.17 5.56 0.09 -9.18 16 8 C -0.07 -0.89 0.49 -155.45 -0.08 -0.97 16 9 C -0.15 -1.79 7.78 37.15 0.29 -1.50 16 10 C -0.11 -1.06 4.39 -26.60 -0.12 -1.18 16 11 C 0.11 0.80 6.38 -4.48 -0.03 0.77 16 12 N -0.72 -7.03 5.26 -61.39 -0.32 -7.36 16 13 C 0.53 7.12 7.23 -11.88 -0.09 7.03 16 14 O -0.55 -9.79 17.78 5.56 0.10 -9.69 16 15 C -0.14 -1.79 4.05 -28.10 -0.11 -1.91 16 16 C 0.06 0.96 4.85 -3.06 -0.01 0.94 16 17 C 0.18 3.24 3.06 -66.10 -0.20 3.04 16 18 H 0.07 1.25 8.02 -51.93 -0.42 0.84 16 19 N -0.72 -16.30 5.17 -51.65 -0.27 -16.56 16 20 C -0.34 -8.87 9.98 -15.06 -0.15 -9.02 16 21 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.04 -1.02 5.50 -17.43 -0.10 -1.12 16 23 N -0.94 -27.66 13.70 55.49 0.76 -26.90 16 24 Si 1.08 25.18 29.92 -169.99 -5.09 20.09 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.68 8.07 -51.93 -0.42 0.27 16 31 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 32 H 0.07 0.88 7.98 -51.93 -0.41 0.47 16 33 H 0.08 1.06 5.20 -51.93 -0.27 0.79 16 34 H 0.07 0.74 5.71 -51.93 -0.30 0.45 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.09 0.90 7.83 -51.93 -0.41 0.50 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.47 6.73 -51.93 -0.35 0.12 16 40 H 0.40 3.37 8.80 -40.82 -0.36 3.01 16 41 H 0.12 1.76 4.77 -51.93 -0.25 1.51 16 42 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 43 H 0.08 1.39 5.39 -51.93 -0.28 1.11 16 44 H 0.07 1.08 5.83 -51.93 -0.30 0.78 16 45 H 0.37 8.70 6.55 -40.82 -0.27 8.43 16 46 H 0.26 7.36 6.77 -40.82 -0.28 7.08 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -32.76 352.18 -7.49 -40.25 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.88 Total: 11.52 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.63 Total: 2.04 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.40 Total: -60.34 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.19 Total: -18.88 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.09 Total: 20.09 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.76 -7.49 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082589704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.784 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds