Wall clock time and date at job start Fri Apr 10 2020 18:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.91753 * 2 1 4 4 C 1.54909 * 111.00668 * 236.10036 * 2 1 3 5 5 N 1.47425 * 104.83569 * 204.91602 * 4 2 1 6 6 C 1.34775 * 125.64930 * 204.16385 * 5 4 2 7 7 O 1.21277 * 120.00245 * 354.35773 * 6 5 4 8 8 C 1.50704 * 119.99753 * 174.36312 * 6 5 4 9 9 C 1.52992 * 109.67209 * 295.65664 * 8 6 5 10 10 C 1.53340 * 109.67113 * 175.15446 * 8 6 5 11 11 C 1.52919 * 108.67434 * 172.73428 * 10 8 6 12 12 N 1.45758 * 110.48621 * 50.75294 * 11 10 8 13 13 C 1.33351 * 124.10829 * 340.95247 * 12 11 10 14 14 O 1.21275 * 118.24590 * 182.17340 * 13 12 11 15 15 C 1.50170 * 123.50797 * 2.17360 * 13 12 11 16 16 C 1.47026 * 108.69993 * 24.12782 * 5 4 2 17 17 C 1.54321 * 107.27224 * 358.94070 * 16 5 4 18 18 H 1.09003 * 110.72149 * 96.34728 * 17 16 5 19 19 N 1.46495 * 110.72232 * 219.44443 * 17 16 5 20 20 C 1.36937 * 120.00033 * 273.54980 * 19 17 16 21 21 H 1.08000 * 120.00073 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00152 * 179.97438 * 20 19 17 23 23 N 1.31622 * 119.99792 * 0.27046 * 22 20 19 24 24 Si 1.86800 * 120.00091 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47187 * 89.99684 * 24 22 20 26 26 H 1.48501 * 109.46922 * 209.99878 * 24 22 20 27 27 H 1.48498 * 109.46945 * 329.99620 * 24 22 20 28 28 H 1.08996 * 109.47269 * 296.09606 * 1 2 3 29 29 H 1.09000 * 109.46871 * 56.09448 * 1 2 3 30 30 H 1.08998 * 109.47093 * 176.09144 * 1 2 3 31 31 H 1.09000 * 110.36593 * 86.07453 * 4 2 1 32 32 H 1.09007 * 110.36555 * 323.75696 * 4 2 1 33 33 H 1.09002 * 109.47565 * 65.94010 * 9 8 6 34 34 H 1.08997 * 109.47569 * 185.94853 * 9 8 6 35 35 H 1.09006 * 109.47166 * 305.94785 * 9 8 6 36 36 H 1.08997 * 109.60715 * 292.49308 * 10 8 6 37 37 H 1.09006 * 109.60372 * 52.98270 * 10 8 6 38 38 H 1.08999 * 109.30265 * 171.07006 * 11 10 8 39 39 H 1.08998 * 109.30052 * 290.44406 * 11 10 8 40 40 H 0.97003 * 117.94310 * 160.92641 * 12 11 10 41 41 H 1.08996 * 109.41728 * 222.31964 * 15 13 12 42 42 H 1.09001 * 109.38576 * 102.57961 * 15 13 12 43 43 H 1.08998 * 109.88143 * 239.51964 * 16 5 4 44 44 H 1.08998 * 110.00831 * 118.42977 * 16 5 4 45 45 H 0.97003 * 120.00224 * 93.54367 * 19 17 16 46 46 H 0.96997 * 120.00115 * 359.72317 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2430 -0.7734 6 6 4.4481 -1.5602 -1.5941 7 8 4.2730 -1.5968 -2.7936 8 6 5.8072 -1.8694 -1.0212 9 6 6.3724 -0.6242 -0.3350 10 6 6.7519 -2.3138 -2.1443 11 6 8.1641 -2.4458 -1.5727 12 7 8.1516 -3.2629 -0.3657 13 6 7.0598 -3.5090 0.3593 14 8 7.1782 -4.1713 1.3683 15 6 5.6916 -3.0100 -0.0067 16 6 3.4674 -1.2741 0.6960 17 6 2.0861 -0.8080 1.2022 18 1 1.4478 -1.6633 1.4238 19 7 2.2286 0.0495 2.3814 20 6 2.3033 -0.5094 3.6293 21 1 2.2569 -1.5823 3.7442 22 6 2.4388 0.3030 4.7467 23 7 2.4901 1.6108 4.6072 24 14 2.5400 -0.4594 6.4491 25 1 3.9602 -0.7347 6.7845 26 1 1.9689 0.4804 7.4470 27 1 1.7714 -1.7298 6.4690 28 1 -0.3633 0.4520 0.9229 29 1 -0.3633 0.5733 -0.8529 30 1 -0.3633 -1.0253 -0.0700 31 1 2.1559 -0.1719 -2.0837 32 1 1.4518 -1.6703 -1.4025 33 1 5.7607 -0.3784 0.5330 34 1 7.3960 -0.8187 -0.0149 35 1 6.3632 0.2118 -1.0345 36 1 6.4251 -3.2763 -2.5377 37 1 6.7481 -1.5700 -2.9411 38 1 8.8116 -2.9110 -2.3160 39 1 8.5499 -1.4550 -1.3330 40 1 8.9899 -3.6523 -0.0717 41 1 5.1863 -2.6482 0.8887 42 1 5.1138 -3.8250 -0.4426 43 1 4.2426 -0.5998 1.0599 44 1 3.6662 -2.2884 1.0422 45 1 2.2700 1.0131 2.2784 46 1 2.4372 2.0067 3.7233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082589704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:05 Heat of formation + Delta-G solvation = -78.757929 kcal Electronic energy + Delta-G solvation = -27359.497655 eV Core-core repulsion = 23669.225575 eV Total energy + Delta-G solvation = -3690.272080 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.32655 -40.78305 -39.23325 -37.70243 -36.22351 -35.19112 -33.73406 -32.38006 -30.78903 -29.14392 -28.98519 -27.63812 -26.04768 -25.38353 -23.93447 -22.92409 -21.47239 -20.47764 -19.57758 -19.33276 -18.52826 -17.89240 -17.49776 -17.06996 -16.80599 -16.45845 -16.17913 -15.88715 -15.75744 -15.42542 -15.20650 -14.85297 -14.63470 -14.24352 -14.21564 -13.87365 -13.59946 -13.47107 -13.32104 -12.93318 -12.79992 -12.70023 -12.56758 -12.46763 -12.26146 -12.09932 -12.04646 -11.86073 -11.81871 -11.64652 -11.38779 -11.18868 -10.94636 -10.62396 -10.11218 -9.71118 -9.15049 -8.36021 -5.32490 1.41282 1.51391 1.60986 1.69219 1.82999 1.86293 2.25220 2.70753 3.10916 3.34836 3.38772 3.48787 3.60362 3.65335 3.67827 3.79312 3.90874 4.08444 4.09896 4.17932 4.28535 4.33619 4.42334 4.49022 4.53827 4.58249 4.62344 4.68503 4.78231 4.79951 4.85728 4.92935 5.00189 5.03245 5.08060 5.15614 5.22633 5.28243 5.42166 5.64195 5.79985 6.22018 6.41188 6.52878 6.98263 7.08590 7.12456 7.98021 8.08610 9.15329 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.004989 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.475965 B = 5610.675424 C = 7307.008700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 H 0.074 0.926 4 C 0.117 3.883 5 N -0.608 5.608 6 C 0.539 3.461 7 O -0.568 6.568 8 C -0.069 4.069 9 C -0.149 4.149 10 C -0.108 4.108 11 C 0.108 3.892 12 N -0.707 5.707 13 C 0.527 3.473 14 O -0.602 6.602 15 C -0.136 4.136 16 C 0.076 3.924 17 C 0.173 3.827 18 H 0.063 0.937 19 N -0.732 5.732 20 C -0.328 4.328 21 H 0.067 0.933 22 C -0.095 4.095 23 N -0.974 5.974 24 Si 1.120 2.880 25 H -0.289 1.289 26 H -0.295 1.295 27 H -0.274 1.274 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.408 0.592 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.363 0.637 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.983 -6.583 -16.708 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.123 4.123 3 H 0.092 0.908 4 C -0.005 4.005 5 N -0.341 5.341 6 C 0.328 3.672 7 O -0.448 6.448 8 C -0.072 4.072 9 C -0.206 4.206 10 C -0.146 4.146 11 C -0.014 4.014 12 N -0.358 5.358 13 C 0.314 3.686 14 O -0.485 6.485 15 C -0.176 4.176 16 C -0.050 4.050 17 C 0.063 3.937 18 H 0.081 0.919 19 N -0.373 5.373 20 C -0.459 4.459 21 H 0.085 0.915 22 C -0.287 4.287 23 N -0.622 5.622 24 Si 0.947 3.053 25 H -0.216 1.216 26 H -0.221 1.221 27 H -0.199 1.199 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.245 0.755 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.196 0.804 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.915 -6.768 -15.310 18.517 hybrid contribution -0.006 0.038 -1.201 1.202 sum 7.910 -6.730 -16.512 19.506 Atomic orbital electron populations 1.21569 0.92385 1.02668 1.01970 1.22537 0.97504 0.98811 0.93463 0.90799 1.22313 0.82557 0.98543 0.97136 1.48498 1.12544 1.65746 1.07275 1.20368 0.85438 0.75810 0.85570 1.90657 1.84304 1.54289 1.15550 1.20812 0.92604 0.96792 0.97035 1.22058 1.02260 0.95636 1.00694 1.21762 0.92905 1.03599 0.96367 1.21711 0.97193 0.96573 0.85956 1.45438 1.10537 1.52079 1.27724 1.20001 0.87365 0.78898 0.82323 1.90764 1.87000 1.42767 1.27927 1.22010 0.95055 0.99065 1.01441 1.23327 1.01741 1.01325 0.78565 1.21385 0.92606 0.93571 0.86167 0.91860 1.42441 1.88405 1.04472 1.01933 1.20335 1.46065 0.93299 0.86239 0.91455 1.26920 1.00513 0.95344 1.05923 1.70966 1.55884 1.10950 1.24383 0.82695 0.76672 0.74190 0.71783 1.21623 1.22102 1.19900 0.93679 0.90620 0.91599 0.90175 0.90204 0.92754 0.89651 0.90721 0.90574 0.87976 0.86611 0.89358 0.75497 0.87825 0.87636 0.91429 0.91252 0.80436 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.31 71.98 0.67 -2.59 16 2 C -0.10 -2.98 3.25 -9.40 -0.03 -3.01 16 3 H 0.07 2.27 8.00 -2.38 -0.02 2.25 16 4 C 0.12 3.06 6.36 86.85 0.55 3.62 16 5 N -0.61 -17.32 3.32 -811.79 -2.70 -20.01 16 6 C 0.54 14.93 6.56 87.66 0.58 15.51 16 7 O -0.57 -18.10 16.17 -3.02 -0.05 -18.15 16 8 C -0.07 -1.54 0.49 -52.79 -0.03 -1.57 16 9 C -0.15 -3.27 7.78 71.98 0.56 -2.71 16 10 C -0.11 -1.76 4.39 30.68 0.13 -1.63 16 11 C 0.11 1.19 6.38 86.49 0.55 1.74 16 12 N -0.71 -12.06 5.26 -467.33 -2.46 -14.52 16 13 C 0.53 13.75 7.23 87.71 0.63 14.39 16 14 O -0.60 -21.51 17.78 -3.01 -0.05 -21.56 16 15 C -0.14 -3.41 4.05 29.71 0.12 -3.29 16 16 C 0.08 2.45 4.85 86.73 0.42 2.87 16 17 C 0.17 6.18 3.06 46.18 0.14 6.32 16 18 H 0.06 2.33 8.02 -2.39 -0.02 2.31 16 19 N -0.73 -33.64 5.17 -317.33 -1.64 -35.28 16 20 C -0.33 -17.30 9.98 84.03 0.84 -16.46 16 21 H 0.07 3.50 7.83 -2.91 -0.02 3.48 16 22 C -0.09 -5.29 5.50 84.86 0.47 -4.82 16 23 N -0.97 -58.69 13.70 21.65 0.30 -58.39 16 24 Si 1.12 51.15 29.92 68.60 2.05 53.21 16 25 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.52 8.07 -2.39 -0.02 1.51 16 31 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16 32 H 0.08 1.92 7.98 -2.38 -0.02 1.90 16 33 H 0.05 1.47 5.20 -2.39 -0.01 1.46 16 34 H 0.08 1.61 5.71 -2.39 -0.01 1.59 16 35 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 37 H 0.10 1.60 7.83 -2.38 -0.02 1.58 16 38 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.09 0.78 6.73 -2.39 -0.02 0.76 16 40 H 0.41 5.88 8.80 -92.71 -0.82 5.06 16 41 H 0.10 3.02 4.77 -2.39 -0.01 3.01 16 42 H 0.11 2.54 8.09 -2.39 -0.02 2.52 16 43 H 0.07 2.40 5.39 -2.39 -0.01 2.38 16 44 H 0.07 2.23 5.83 -2.39 -0.01 2.22 16 45 H 0.36 17.61 6.55 -92.71 -0.61 17.01 16 46 H 0.25 14.67 6.77 -92.71 -0.63 14.04 16 Total: -1.00 -71.74 352.18 0.79 -70.94 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.26 Total: 35.40 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 5.61 Total: 8.36 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -6.50 Total: -128.21 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.10 Total: -39.71 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.21 kcal Total: -71.74 0.79 -70.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082589704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.816 kcal (2) G-P(sol) polarization free energy of solvation -71.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds