Wall clock time and date at job start Fri Apr 10 2020 18:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.64397 * 2 1 4 4 C 1.54331 * 110.71900 * 236.66486 * 2 1 3 5 5 N 1.47022 * 107.27324 * 219.44440 * 4 2 1 6 6 C 1.34773 * 125.64726 * 178.96002 * 5 4 2 7 7 O 1.21277 * 120.00199 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99833 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47137 * 180.02562 * 8 6 5 10 10 H 1.09009 * 109.29746 * 304.57965 * 9 8 6 11 11 C 1.52918 * 109.30143 * 185.00036 * 9 8 6 12 12 C 1.53354 * 108.67393 * 188.93414 * 11 9 8 13 13 C 1.53067 * 108.42468 * 67.52847 * 12 11 9 14 14 C 1.50175 * 109.89457 * 311.10219 * 13 12 11 15 15 O 1.21276 * 118.24727 * 197.56418 * 14 13 12 16 16 N 1.33359 * 123.50649 * 17.57514 * 14 13 12 17 17 C 1.47425 * 108.70063 * 358.94282 * 5 4 2 18 18 C 1.54904 * 104.83734 * 24.12715 * 17 5 4 19 19 H 1.09000 * 111.03568 * 81.07630 * 18 17 5 20 20 N 1.46496 * 111.00766 * 204.91958 * 18 17 5 21 21 C 1.36945 * 119.99718 * 267.19494 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 H 1.09001 * 109.46684 * 296.85622 * 1 2 3 30 30 H 1.09002 * 109.47079 * 56.85265 * 1 2 3 31 31 H 1.08998 * 109.47726 * 176.85758 * 1 2 3 32 32 H 1.09002 * 109.87899 * 338.86735 * 4 2 1 33 33 H 1.08998 * 109.88358 * 99.87200 * 4 2 1 34 34 H 1.09000 * 109.47389 * 299.99556 * 8 6 5 35 35 H 1.08996 * 109.47529 * 60.00152 * 8 6 5 36 36 H 1.08999 * 109.60314 * 308.68559 * 11 9 8 37 37 H 1.08997 * 109.60365 * 69.01214 * 11 9 8 38 38 H 1.09003 * 109.67226 * 187.26534 * 12 11 9 39 39 H 1.09005 * 109.67068 * 307.75881 * 12 11 9 40 40 H 1.09003 * 109.39963 * 71.23234 * 13 12 11 41 41 H 1.09001 * 109.40143 * 190.96898 * 13 12 11 42 42 H 0.96998 * 117.94719 * 177.77939 * 16 14 13 43 43 H 1.08998 * 110.36657 * 265.28712 * 17 5 4 44 44 H 1.09000 * 110.36657 * 142.96590 * 17 5 4 45 45 H 0.96996 * 120.00499 * 87.19225 * 20 18 17 46 46 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2060 5 7 3.2444 -1.5521 -0.7365 6 6 3.9920 -2.3864 -1.4858 7 8 3.7192 -2.5607 -2.6546 8 6 5.1668 -3.1027 -0.8714 9 6 5.8394 -3.9800 -1.9292 10 1 5.1003 -4.6558 -2.3597 11 6 6.9519 -4.7990 -1.2737 12 6 7.7593 -5.4994 -2.3734 13 6 8.5079 -4.4334 -3.1773 14 6 7.5648 -3.3320 -3.5681 15 8 7.8956 -2.5837 -4.4633 16 7 6.3830 -3.1326 -2.9832 17 6 3.4632 -1.2488 0.6895 18 6 2.0790 -0.7935 1.2151 19 1 1.4448 -1.6509 1.4406 20 7 2.2215 0.0735 2.3873 21 6 2.1868 -0.4654 3.6458 22 1 2.0540 -1.5295 3.7740 23 6 2.3224 0.3560 4.7565 24 7 2.4838 1.6529 4.6002 25 14 2.2743 -0.3790 6.4731 26 1 2.4409 0.7008 7.4788 27 1 0.9702 -1.0567 6.6851 28 1 3.3745 -1.3656 6.6201 29 1 -0.3633 0.4643 0.9169 30 1 -0.3633 0.5619 -0.8604 31 1 -0.3634 -1.0261 -0.0563 32 1 1.3128 -1.4784 -1.5752 33 1 2.3715 -0.1060 -1.9987 34 1 5.8833 -2.3713 -0.4975 35 1 4.8213 -3.7270 -0.0474 36 1 7.6058 -4.1382 -0.7046 37 1 6.5146 -5.5429 -0.6077 38 1 8.4738 -6.1879 -1.9222 39 1 7.0848 -6.0488 -3.0303 40 1 9.3138 -4.0215 -2.5699 41 1 8.9281 -4.8859 -4.0755 42 1 5.8520 -2.3761 -3.2775 43 1 4.1931 -0.4467 0.7991 44 1 3.7959 -2.1407 1.2204 45 1 2.3405 1.0292 2.2721 46 1 2.5782 2.2269 5.3764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082632380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:13 Heat of formation + Delta-G solvation = -75.507749 kcal Electronic energy + Delta-G solvation = -26033.939750 eV Core-core repulsion = 22343.808608 eV Total energy + Delta-G solvation = -3690.131142 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.72981 -39.71512 -37.87049 -36.67628 -34.18628 -33.40359 -32.69700 -31.36941 -30.78028 -28.24738 -27.61510 -26.02306 -24.10674 -23.54113 -22.55735 -21.55198 -19.99769 -19.35042 -19.10467 -17.45547 -17.29882 -16.79496 -16.44417 -16.11584 -15.55010 -15.21261 -14.83575 -14.42804 -14.25876 -13.93492 -13.82272 -13.55999 -13.30725 -13.16100 -13.02477 -12.93726 -12.73638 -12.19757 -11.92067 -11.78951 -11.73681 -11.51513 -11.34062 -11.29606 -11.18478 -11.07655 -10.79726 -10.69301 -10.34340 -10.05793 -9.96615 -9.84365 -9.70227 -9.14904 -9.09476 -8.46890 -7.18106 -5.93279 -3.24795 2.56972 2.64649 3.06996 3.21470 3.33477 3.38791 3.39957 4.23015 4.27954 4.37854 4.44917 4.51319 4.68039 4.82981 4.96293 4.99135 5.04871 5.13766 5.21169 5.23476 5.34017 5.45401 5.47048 5.54573 5.55800 5.57696 5.65046 5.67219 5.75951 5.85213 5.89729 5.94095 6.13257 6.15456 6.27038 6.38120 6.41886 6.55014 6.75461 6.77629 7.32679 7.53982 7.66253 8.14705 8.20319 8.24323 9.35893 9.88936 10.23695 11.28351 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015997 B = 0.003138 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.898704 B = 8921.143918 C =10044.982920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.116 4.116 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.610 5.610 6 C 0.523 3.477 7 O -0.554 6.554 8 C -0.153 4.153 9 C 0.157 3.843 10 H 0.084 0.916 11 C -0.135 4.135 12 C -0.123 4.123 13 C -0.136 4.136 14 C 0.516 3.484 15 O -0.566 6.566 16 N -0.706 5.706 17 C 0.069 3.931 18 C 0.178 3.822 19 H 0.069 0.931 20 N -0.709 5.709 21 C -0.252 4.252 22 H 0.072 0.928 23 C -0.006 4.006 24 N -0.928 5.928 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.406 0.594 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.387 0.613 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 -12.640 -10.365 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.136 4.136 3 H 0.102 0.898 4 C -0.007 4.007 5 N -0.342 5.342 6 C 0.311 3.689 7 O -0.434 6.434 8 C -0.193 4.193 9 C 0.051 3.949 10 H 0.102 0.898 11 C -0.173 4.173 12 C -0.160 4.160 13 C -0.176 4.176 14 C 0.303 3.697 15 O -0.445 6.445 16 N -0.360 5.360 17 C -0.057 4.057 18 C 0.065 3.935 19 H 0.087 0.913 20 N -0.349 5.349 21 C -0.383 4.383 22 H 0.090 0.910 23 C -0.203 4.203 24 N -0.575 5.575 25 Si 0.739 3.261 26 H -0.216 1.216 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.244 0.756 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.222 0.778 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.209 -12.645 -11.199 17.996 hybrid contribution -0.177 0.321 1.090 1.150 sum 6.032 -12.324 -10.109 17.043 Atomic orbital electron populations 1.21658 0.93902 1.01513 1.02082 1.22535 0.96564 0.99842 0.94620 0.89791 1.21990 0.87418 0.94406 0.96935 1.48554 1.29669 1.43415 1.12599 1.20247 0.83460 0.79120 0.86045 1.90683 1.71442 1.64863 1.16418 1.22117 0.96693 1.00635 0.99870 1.20726 0.95296 0.91722 0.87109 0.89847 1.21977 0.97300 0.99700 0.98272 1.21650 0.99457 0.97525 0.97405 1.21655 0.98157 0.95167 1.02598 1.20189 0.82080 0.85900 0.81541 1.90753 1.74854 1.47807 1.31090 1.45703 1.19545 1.32363 1.38381 1.23583 1.02856 1.00829 0.78410 1.21353 0.91666 0.93758 0.86727 0.91314 1.42297 1.86164 1.06273 1.00131 1.19188 1.43314 0.92681 0.83098 0.91013 1.24771 1.02082 0.95422 0.98035 1.69647 1.55561 1.02705 1.29609 0.86263 0.77922 0.77815 0.84116 1.21621 1.21117 1.21123 0.91287 0.93213 0.92932 0.91586 0.91969 0.88050 0.87100 0.90486 0.89358 0.90299 0.90969 0.88287 0.88323 0.75584 0.91108 0.91106 0.77827 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.16 37.16 0.34 -1.49 16 2 C -0.12 -1.71 3.20 -88.78 -0.28 -2.00 16 3 H 0.08 1.30 8.00 -51.93 -0.42 0.89 16 4 C 0.12 1.63 6.46 -3.06 -0.02 1.61 16 5 N -0.61 -8.69 3.33 -170.52 -0.57 -9.26 16 6 C 0.52 7.19 7.49 -10.99 -0.08 7.11 16 7 O -0.55 -9.07 14.82 5.56 0.08 -8.99 16 8 C -0.15 -1.52 4.36 -27.88 -0.12 -1.64 16 9 C 0.16 1.47 2.65 -68.37 -0.18 1.29 16 10 H 0.08 0.83 7.96 -51.92 -0.41 0.41 16 11 C -0.13 -0.87 5.30 -26.59 -0.14 -1.01 16 12 C -0.12 -0.75 6.03 -26.51 -0.16 -0.91 16 13 C -0.14 -1.12 6.03 -28.10 -0.17 -1.29 16 14 C 0.52 6.57 7.71 -11.87 -0.09 6.48 16 15 O -0.57 -9.76 17.78 5.56 0.10 -9.66 16 16 N -0.71 -8.54 5.00 -54.85 -0.27 -8.81 16 17 C 0.07 1.05 6.38 -2.53 -0.02 1.03 16 18 C 0.18 3.07 3.16 -65.78 -0.21 2.86 16 19 H 0.07 1.22 8.00 -51.93 -0.42 0.81 16 20 N -0.71 -15.74 5.24 -51.35 -0.27 -16.01 16 21 C -0.25 -6.32 9.96 -15.06 -0.15 -6.47 16 22 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 23 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 24 N -0.93 -26.17 13.06 55.49 0.72 -25.45 16 25 Si 0.91 20.85 29.55 -169.99 -5.02 15.82 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.67 8.06 -51.93 -0.42 0.26 16 32 H 0.07 0.91 7.76 -51.93 -0.40 0.51 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.11 0.90 7.85 -51.93 -0.41 0.49 16 36 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.41 5.80 6.84 -40.82 -0.28 5.52 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.00 7.48 -51.93 -0.39 0.61 16 45 H 0.39 9.29 7.76 -40.82 -0.32 8.97 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 368.88 15.07 5.56 5.56 Total: -1.00 -31.48 368.88 -8.70 -40.18 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -7.65 Total: 11.30 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.38 Total: 5.32 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.39 Total: -59.53 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.18 Total: -18.65 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.48 -8.70 -40.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082632380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.328 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds