Wall clock time and date at job start Fri Apr 10 2020 18:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.64397 * 2 1 4 4 C 1.54331 * 110.71900 * 236.66486 * 2 1 3 5 5 N 1.47022 * 107.27324 * 219.44440 * 4 2 1 6 6 C 1.34773 * 125.64726 * 178.96002 * 5 4 2 7 7 O 1.21277 * 120.00199 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99833 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47137 * 180.02562 * 8 6 5 10 10 H 1.09009 * 109.29746 * 304.57965 * 9 8 6 11 11 C 1.52918 * 109.30143 * 185.00036 * 9 8 6 12 12 C 1.53354 * 108.67393 * 188.93414 * 11 9 8 13 13 C 1.53067 * 108.42468 * 67.52847 * 12 11 9 14 14 C 1.50175 * 109.89457 * 311.10219 * 13 12 11 15 15 O 1.21276 * 118.24727 * 197.56418 * 14 13 12 16 16 N 1.33359 * 123.50649 * 17.57514 * 14 13 12 17 17 C 1.47425 * 108.70063 * 358.94282 * 5 4 2 18 18 C 1.54904 * 104.83734 * 24.12715 * 17 5 4 19 19 H 1.09000 * 111.03568 * 81.07630 * 18 17 5 20 20 N 1.46496 * 111.00766 * 204.91958 * 18 17 5 21 21 C 1.36945 * 119.99718 * 267.19494 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 H 1.09001 * 109.46684 * 296.85622 * 1 2 3 30 30 H 1.09002 * 109.47079 * 56.85265 * 1 2 3 31 31 H 1.08998 * 109.47726 * 176.85758 * 1 2 3 32 32 H 1.09002 * 109.87899 * 338.86735 * 4 2 1 33 33 H 1.08998 * 109.88358 * 99.87200 * 4 2 1 34 34 H 1.09000 * 109.47389 * 299.99556 * 8 6 5 35 35 H 1.08996 * 109.47529 * 60.00152 * 8 6 5 36 36 H 1.08999 * 109.60314 * 308.68559 * 11 9 8 37 37 H 1.08997 * 109.60365 * 69.01214 * 11 9 8 38 38 H 1.09003 * 109.67226 * 187.26534 * 12 11 9 39 39 H 1.09005 * 109.67068 * 307.75881 * 12 11 9 40 40 H 1.09003 * 109.39963 * 71.23234 * 13 12 11 41 41 H 1.09001 * 109.40143 * 190.96898 * 13 12 11 42 42 H 0.96998 * 117.94719 * 177.77939 * 16 14 13 43 43 H 1.08998 * 110.36657 * 265.28712 * 17 5 4 44 44 H 1.09000 * 110.36657 * 142.96590 * 17 5 4 45 45 H 0.96996 * 120.00499 * 87.19225 * 20 18 17 46 46 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2060 5 7 3.2444 -1.5521 -0.7365 6 6 3.9920 -2.3864 -1.4858 7 8 3.7192 -2.5607 -2.6546 8 6 5.1668 -3.1027 -0.8714 9 6 5.8394 -3.9800 -1.9292 10 1 5.1003 -4.6558 -2.3597 11 6 6.9519 -4.7990 -1.2737 12 6 7.7593 -5.4994 -2.3734 13 6 8.5079 -4.4334 -3.1773 14 6 7.5648 -3.3320 -3.5681 15 8 7.8956 -2.5837 -4.4633 16 7 6.3830 -3.1326 -2.9832 17 6 3.4632 -1.2488 0.6895 18 6 2.0790 -0.7935 1.2151 19 1 1.4448 -1.6509 1.4406 20 7 2.2215 0.0735 2.3873 21 6 2.1868 -0.4654 3.6458 22 1 2.0540 -1.5295 3.7740 23 6 2.3224 0.3560 4.7565 24 7 2.4838 1.6529 4.6002 25 14 2.2743 -0.3790 6.4731 26 1 2.4409 0.7008 7.4788 27 1 0.9702 -1.0567 6.6851 28 1 3.3745 -1.3656 6.6201 29 1 -0.3633 0.4643 0.9169 30 1 -0.3633 0.5619 -0.8604 31 1 -0.3634 -1.0261 -0.0563 32 1 1.3128 -1.4784 -1.5752 33 1 2.3715 -0.1060 -1.9987 34 1 5.8833 -2.3713 -0.4975 35 1 4.8213 -3.7270 -0.0474 36 1 7.6058 -4.1382 -0.7046 37 1 6.5146 -5.5429 -0.6077 38 1 8.4738 -6.1879 -1.9222 39 1 7.0848 -6.0488 -3.0303 40 1 9.3138 -4.0215 -2.5699 41 1 8.9281 -4.8859 -4.0755 42 1 5.8520 -2.3761 -3.2775 43 1 4.1931 -0.4467 0.7991 44 1 3.7959 -2.1407 1.2204 45 1 2.3405 1.0292 2.2721 46 1 2.5782 2.2269 5.3764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082632380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:12 Heat of formation + Delta-G solvation = -97.239072 kcal Electronic energy + Delta-G solvation = -26034.882091 eV Core-core repulsion = 22343.808608 eV Total energy + Delta-G solvation = -3691.073483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69129 -40.82799 -39.09901 -37.63169 -35.85094 -34.15270 -33.96110 -32.60637 -32.16831 -29.18889 -28.98641 -27.03884 -25.82046 -24.34371 -23.40960 -22.86714 -21.33226 -20.24173 -20.03557 -19.11772 -18.39076 -17.84379 -17.53160 -17.21508 -16.68813 -16.35198 -16.05592 -15.75482 -15.32281 -15.15274 -14.71329 -14.53070 -14.51160 -14.42932 -14.12850 -14.05826 -13.93700 -13.25160 -13.04981 -12.95863 -12.85696 -12.78690 -12.58249 -12.26994 -12.23541 -12.13783 -12.00031 -11.89086 -11.80362 -11.69915 -11.41054 -11.05012 -10.88664 -10.72358 -10.11196 -9.69228 -9.02268 -7.91999 -5.21884 1.53237 1.54265 1.55679 1.60493 1.61048 1.96700 2.33884 2.59367 3.32001 3.40024 3.55840 3.67377 3.71675 3.81541 3.95080 3.95498 4.04004 4.17138 4.22477 4.25904 4.38251 4.47250 4.51725 4.60277 4.62885 4.68445 4.71892 4.87878 4.89938 4.92343 4.99213 5.08492 5.10677 5.12686 5.13376 5.20831 5.34054 5.37809 5.45392 5.57662 5.73530 6.28262 6.41548 6.52398 7.06734 7.19144 7.36357 8.07852 8.31519 9.30628 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015997 B = 0.003138 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.898704 B = 8921.143918 C =10044.982920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 H 0.074 0.926 4 C 0.118 3.882 5 N -0.611 5.611 6 C 0.518 3.482 7 O -0.582 6.582 8 C -0.146 4.146 9 C 0.155 3.845 10 H 0.079 0.921 11 C -0.130 4.130 12 C -0.117 4.117 13 C -0.130 4.130 14 C 0.507 3.493 15 O -0.623 6.623 16 N -0.708 5.708 17 C 0.084 3.916 18 C 0.171 3.829 19 H 0.069 0.931 20 N -0.720 5.720 21 C -0.241 4.241 22 H 0.083 0.917 23 C -0.069 4.069 24 N -0.968 5.968 25 Si 0.968 3.032 26 H -0.302 1.302 27 H -0.280 1.280 28 H -0.274 1.274 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.390 0.610 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.375 0.625 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 -15.431 -9.776 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.127 4.127 3 H 0.092 0.908 4 C -0.005 4.005 5 N -0.344 5.344 6 C 0.309 3.691 7 O -0.463 6.463 8 C -0.186 4.186 9 C 0.050 3.950 10 H 0.097 0.903 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.170 4.170 14 C 0.296 3.704 15 O -0.506 6.506 16 N -0.358 5.358 17 C -0.041 4.041 18 C 0.060 3.940 19 H 0.087 0.913 20 N -0.359 5.359 21 C -0.372 4.372 22 H 0.100 0.900 23 C -0.262 4.262 24 N -0.618 5.618 25 Si 0.798 3.202 26 H -0.229 1.229 27 H -0.206 1.206 28 H -0.200 1.200 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.157 0.843 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.226 0.774 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.208 0.792 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.789 -15.520 -10.616 19.991 hybrid contribution -0.430 1.171 0.782 1.472 sum 6.358 -14.349 -9.834 18.521 Atomic orbital electron populations 1.21611 0.92859 1.02286 1.01875 1.22434 0.97410 0.99082 0.93768 0.90758 1.21947 0.87707 0.94468 0.96379 1.48590 1.29910 1.43699 1.12194 1.20952 0.83895 0.78578 0.85661 1.90678 1.72287 1.65652 1.17721 1.22189 0.95045 1.00860 1.00500 1.20945 0.96375 0.91316 0.86349 0.90306 1.22026 0.96352 0.99882 0.98468 1.21667 0.99754 0.96993 0.97004 1.21708 0.97521 0.94228 1.03527 1.21086 0.82426 0.86269 0.80578 1.90717 1.76103 1.50130 1.33690 1.45909 1.19202 1.32004 1.38728 1.23217 1.00798 1.01133 0.78998 1.21517 0.93007 0.93382 0.86055 0.91317 1.42406 1.86429 1.06230 1.00832 1.19595 1.40441 0.93068 0.84131 0.89956 1.25499 1.03443 0.95792 1.01468 1.69804 1.58217 1.03966 1.29811 0.85294 0.78201 0.76790 0.79948 1.22919 1.20582 1.20013 0.93398 0.91231 0.91916 0.90916 0.92011 0.87463 0.84349 0.89887 0.86739 0.87445 0.91126 0.86749 0.87808 0.77412 0.92302 0.89379 0.79241 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.16 71.98 0.66 -2.72 16 2 C -0.11 -3.10 3.20 -9.60 -0.03 -3.13 16 3 H 0.07 2.31 8.00 -2.39 -0.02 2.29 16 4 C 0.12 3.19 6.46 86.73 0.56 3.75 16 5 N -0.61 -16.51 3.33 -811.80 -2.70 -19.21 16 6 C 0.52 13.47 7.49 87.66 0.66 14.13 16 7 O -0.58 -18.64 14.82 -3.02 -0.04 -18.69 16 8 C -0.15 -2.52 4.36 29.85 0.13 -2.39 16 9 C 0.15 2.55 2.65 45.11 0.12 2.67 16 10 H 0.08 1.40 7.96 -2.38 -0.02 1.38 16 11 C -0.13 -1.18 5.30 30.69 0.16 -1.02 16 12 C -0.12 -1.01 6.03 30.74 0.19 -0.83 16 13 C -0.13 -1.88 6.03 29.71 0.18 -1.70 16 14 C 0.51 12.77 7.71 87.71 0.68 13.45 16 15 O -0.62 -22.17 17.78 -3.02 -0.05 -22.22 16 16 N -0.71 -16.74 5.00 -446.63 -2.23 -18.98 16 17 C 0.08 2.42 6.38 86.85 0.55 2.97 16 18 C 0.17 5.73 3.16 46.38 0.15 5.88 16 19 H 0.07 2.33 8.00 -2.39 -0.02 2.31 16 20 N -0.72 -31.85 5.24 -316.38 -1.66 -33.51 16 21 C -0.24 -11.88 9.96 84.03 0.84 -11.05 16 22 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 23 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 24 N -0.97 -55.56 13.06 21.65 0.28 -55.28 16 25 Si 0.97 42.65 29.55 68.60 2.03 44.68 16 26 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.51 8.06 -2.39 -0.02 1.49 16 32 H 0.07 1.89 7.76 -2.39 -0.02 1.87 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.14 1.67 7.85 -2.39 -0.02 1.66 16 36 H 0.08 0.72 8.11 -2.39 -0.02 0.70 16 37 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.07 0.67 8.13 -2.38 -0.02 0.65 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.39 11.36 6.84 -92.71 -0.63 10.73 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.09 2.24 7.48 -2.39 -0.02 2.22 16 45 H 0.38 18.32 7.76 -92.71 -0.72 17.60 16 46 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -70.11 368.88 0.55 -69.56 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -0.37 Total: 36.80 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 5.30 Total: 16.83 kcal Atomic # 7 Polarization: -120.66 SS G_CDS: -6.31 Total: -126.97 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -0.10 Total: -40.91 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -70.11 0.55 -69.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082632380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.676 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds