Wall clock time and date at job start Fri Apr 10 2020 18:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.64377 * 2 1 4 4 C 1.54336 * 110.85083 * 236.83477 * 2 1 3 5 5 N 1.47021 * 107.26930 * 219.67016 * 4 2 1 6 6 C 1.34776 * 125.65109 * 178.84846 * 5 4 2 7 7 O 1.21282 * 119.99589 * 359.71900 * 6 5 4 8 8 C 1.50696 * 119.99970 * 179.71975 * 6 5 4 9 9 C 1.53003 * 109.46768 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.29830 * 55.41744 * 9 8 6 11 11 C 1.52924 * 109.29785 * 174.99955 * 9 8 6 12 12 C 1.53345 * 108.80962 * 170.98323 * 11 9 8 13 13 C 1.53034 * 108.43937 * 292.69691 * 12 11 9 14 14 C 1.50176 * 110.00000 * 48.65734 * 13 12 11 15 15 O 1.21281 * 118.24314 * 162.50709 * 14 13 12 16 16 N 1.33346 * 123.51168 * 342.53834 * 14 13 12 17 17 C 1.47426 * 108.70131 * 358.59046 * 5 4 2 18 18 C 1.54905 * 104.83276 * 24.34906 * 17 5 4 19 19 H 1.09002 * 111.00421 * 81.06962 * 18 17 5 20 20 N 1.46502 * 111.00636 * 204.91631 * 18 17 5 21 21 C 1.36938 * 120.00223 * 273.55093 * 20 18 17 22 22 H 1.07989 * 120.00250 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99543 * 180.02562 * 21 20 18 24 24 N 1.31625 * 119.99857 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00560 * 359.97438 * 23 21 20 26 26 H 1.48491 * 109.47227 * 90.00190 * 25 23 21 27 27 H 1.48505 * 109.47243 * 210.00395 * 25 23 21 28 28 H 1.48498 * 109.47038 * 330.00221 * 25 23 21 29 29 H 1.09000 * 109.47471 * 296.85624 * 1 2 3 30 30 H 1.09000 * 109.47313 * 56.85906 * 1 2 3 31 31 H 1.09004 * 109.46968 * 176.86077 * 1 2 3 32 32 H 1.09002 * 109.99257 * 100.19621 * 4 2 1 33 33 H 1.08997 * 109.77877 * 339.02818 * 4 2 1 34 34 H 1.08997 * 109.47224 * 60.00146 * 8 6 5 35 35 H 1.08999 * 109.47234 * 299.99726 * 8 6 5 36 36 H 1.09002 * 109.60392 * 290.82261 * 11 9 8 37 37 H 1.08997 * 109.60486 * 51.14582 * 11 9 8 38 38 H 1.09000 * 109.67121 * 52.28399 * 12 11 9 39 39 H 1.08999 * 109.67683 * 172.81938 * 12 11 9 40 40 H 1.08998 * 109.24875 * 288.55747 * 13 12 11 41 41 H 1.09001 * 109.36721 * 168.83690 * 13 12 11 42 42 H 0.97007 * 117.95069 * 182.22230 * 16 14 13 43 43 H 1.08993 * 110.36871 * 143.19554 * 17 5 4 44 44 H 1.08999 * 110.36162 * 265.40467 * 17 5 4 45 45 H 0.97005 * 119.99544 * 93.54576 * 20 18 17 46 46 H 0.96993 * 120.00454 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0793 -0.7890 -1.2073 5 7 3.2445 -1.5519 -0.7365 6 6 3.9923 -2.3860 -1.4858 7 8 3.7192 -2.5607 -2.6545 8 6 5.1677 -3.1016 -0.8715 9 6 5.8397 -3.9796 -1.9291 10 1 6.1105 -3.3656 -2.7881 11 6 7.1029 -4.6063 -1.3374 12 6 7.6420 -5.6535 -2.3194 13 6 6.6452 -6.8127 -2.3862 14 6 5.2543 -6.2833 -2.5871 15 8 4.3998 -7.0491 -2.9799 16 7 4.9086 -5.0161 -2.3573 17 6 3.4633 -1.2487 0.6896 18 6 2.0790 -0.7934 1.2150 19 1 1.4452 -1.6512 1.4402 20 7 2.2215 0.0735 2.3874 21 6 2.3175 -0.4761 3.6379 22 1 2.2878 -1.5487 3.7601 23 6 2.4519 0.3455 4.7486 24 7 2.5447 -0.1828 5.9506 25 14 2.5026 2.2008 4.5375 26 1 1.1231 2.7452 4.6112 27 1 3.3293 2.7994 5.6163 28 1 3.0959 2.5327 3.2173 29 1 -0.3634 0.4642 0.9168 30 1 -0.3634 0.5618 -0.8605 31 1 -0.3633 -1.0262 -0.0563 32 1 2.3814 -0.1003 -1.9964 33 1 1.3156 -1.4714 -1.5804 34 1 4.8228 -3.7259 -0.0473 35 1 5.8839 -2.3697 -0.4980 36 1 7.8546 -3.8331 -1.1782 37 1 6.8635 -5.0846 -0.3877 38 1 7.7499 -5.2079 -3.3083 39 1 8.6090 -6.0179 -1.9730 40 1 6.6868 -7.3766 -1.4544 41 1 6.9071 -7.4672 -3.2176 42 1 3.9791 -4.7685 -2.4826 43 1 3.7961 -2.1406 1.2204 44 1 4.1946 -0.4479 0.7992 45 1 2.2479 1.0370 2.2777 46 1 2.6383 0.3912 6.7268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082632381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:15 Heat of formation + Delta-G solvation = -70.999987 kcal Electronic energy + Delta-G solvation = -26127.495665 eV Core-core repulsion = 22437.559995 eV Total energy + Delta-G solvation = -3689.935671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75059 -39.77548 -37.97033 -36.69484 -34.31899 -33.41490 -32.76874 -31.42264 -31.08498 -28.29024 -27.98935 -26.10700 -24.02531 -23.49669 -22.55050 -21.41039 -20.24352 -19.35196 -19.17440 -17.68711 -17.44895 -16.86906 -16.46376 -16.07522 -15.73893 -15.35110 -14.71412 -14.37513 -14.29668 -14.00712 -13.92807 -13.57527 -13.39313 -13.31943 -13.18153 -12.87466 -12.72562 -12.28796 -12.11300 -11.89611 -11.75493 -11.55220 -11.49355 -11.33823 -11.28996 -11.22174 -10.89087 -10.74479 -10.46284 -10.07651 -9.97173 -9.77246 -9.72053 -9.14990 -9.14097 -8.54373 -7.48837 -5.92888 -3.31636 2.56931 2.60033 3.00282 3.21135 3.25393 3.28609 3.35345 4.21144 4.27004 4.37829 4.44173 4.50204 4.59454 4.80972 4.88181 4.91369 4.96505 5.00970 5.19514 5.21578 5.31815 5.33918 5.43353 5.45789 5.54863 5.57261 5.58114 5.61776 5.65462 5.67539 5.77122 5.89374 6.00125 6.02826 6.16928 6.23212 6.31831 6.40288 6.64874 6.75745 7.32275 7.58546 7.80416 8.11645 8.18543 8.25559 9.01691 9.73821 9.91591 11.24578 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017495 B = 0.003201 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.105109 B = 8746.024272 C = 9595.354261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 H 0.082 0.918 4 C 0.116 3.884 5 N -0.611 5.611 6 C 0.524 3.476 7 O -0.553 6.553 8 C -0.153 4.153 9 C 0.158 3.842 10 H 0.083 0.917 11 C -0.135 4.135 12 C -0.123 4.123 13 C -0.136 4.136 14 C 0.516 3.484 15 O -0.565 6.565 16 N -0.706 5.706 17 C 0.071 3.929 18 C 0.182 3.818 19 H 0.074 0.926 20 N -0.735 5.735 21 C -0.255 4.255 22 H 0.092 0.908 23 C 0.011 3.989 24 N -0.928 5.928 25 Si 0.883 3.117 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.277 1.277 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.406 0.594 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.364 0.636 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.855 -4.704 -15.049 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.137 4.137 3 H 0.100 0.900 4 C -0.007 4.007 5 N -0.344 5.344 6 C 0.313 3.687 7 O -0.432 6.432 8 C -0.194 4.194 9 C 0.052 3.948 10 H 0.101 0.899 11 C -0.173 4.173 12 C -0.160 4.160 13 C -0.176 4.176 14 C 0.303 3.697 15 O -0.444 6.444 16 N -0.360 5.360 17 C -0.054 4.054 18 C 0.070 3.930 19 H 0.092 0.908 20 N -0.376 5.376 21 C -0.384 4.384 22 H 0.110 0.890 23 C -0.185 4.185 24 N -0.574 5.574 25 Si 0.713 3.287 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.203 1.203 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.244 0.756 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.198 0.802 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.546 -5.440 -15.626 18.623 hybrid contribution -0.163 1.682 0.186 1.700 sum 8.383 -3.758 -15.441 17.967 Atomic orbital electron populations 1.21689 0.93667 1.02000 1.02050 1.22521 0.96735 0.99671 0.94740 0.89981 1.21975 0.87650 0.94402 0.96648 1.48548 1.29824 1.43569 1.12469 1.20264 0.83628 0.78881 0.85948 1.90688 1.71485 1.64656 1.16397 1.22128 0.97060 1.00169 1.00007 1.20718 0.89073 0.88477 0.96541 0.89907 1.21975 0.96314 0.99504 0.99488 1.21642 0.98683 0.95383 1.00320 1.21650 0.91546 0.99310 1.05097 1.20183 0.91025 0.81808 0.76656 1.90756 1.51352 1.55236 1.47100 1.45698 1.13833 1.08589 1.67905 1.23483 1.02272 1.01180 0.78504 1.21324 0.92069 0.93713 0.85846 0.90793 1.42644 1.88613 1.03910 1.02448 1.19040 1.43751 0.93998 0.81658 0.89009 1.24681 1.01331 0.97439 0.95094 1.69694 1.55894 1.34319 0.97498 0.86582 0.77893 0.87089 0.77095 1.20914 1.21615 1.20278 0.91420 0.93001 0.92500 0.91841 0.91363 0.87857 0.87112 0.89398 0.90402 0.91031 0.90252 0.88250 0.88316 0.75594 0.90663 0.91084 0.80206 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.16 37.16 0.34 -1.37 16 2 C -0.12 -1.60 3.16 -88.78 -0.28 -1.88 16 3 H 0.08 1.11 7.99 -51.93 -0.42 0.70 16 4 C 0.12 1.54 6.48 -3.06 -0.02 1.52 16 5 N -0.61 -8.34 3.33 -170.52 -0.57 -8.91 16 6 C 0.52 6.98 7.49 -10.99 -0.08 6.90 16 7 O -0.55 -8.79 14.82 5.56 0.08 -8.71 16 8 C -0.15 -1.49 4.36 -27.88 -0.12 -1.62 16 9 C 0.16 1.45 2.66 -68.37 -0.18 1.27 16 10 H 0.08 0.80 7.96 -51.93 -0.41 0.39 16 11 C -0.13 -0.87 5.29 -26.59 -0.14 -1.01 16 12 C -0.12 -0.75 6.04 -26.54 -0.16 -0.91 16 13 C -0.14 -1.13 6.03 -28.12 -0.17 -1.29 16 14 C 0.52 6.57 7.72 -11.87 -0.09 6.48 16 15 O -0.56 -9.74 17.78 5.56 0.10 -9.64 16 16 N -0.71 -8.47 5.00 -54.85 -0.27 -8.74 16 17 C 0.07 1.04 6.38 -2.53 -0.02 1.03 16 18 C 0.18 3.03 3.14 -65.78 -0.21 2.82 16 19 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 20 N -0.73 -15.24 5.08 -51.35 -0.26 -15.51 16 21 C -0.25 -6.50 10.47 -15.06 -0.16 -6.66 16 22 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 23 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 24 N -0.93 -27.39 13.97 55.49 0.78 -26.62 16 25 Si 0.88 20.47 27.74 -169.99 -4.71 15.75 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.28 -5.95 6.52 56.52 0.37 -5.58 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.90 7.77 -51.93 -0.40 0.50 16 34 H 0.10 0.99 7.85 -51.93 -0.41 0.58 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 38 H 0.07 0.45 8.13 -51.93 -0.42 0.02 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.41 5.73 6.84 -40.82 -0.28 5.45 16 43 H 0.07 1.08 7.48 -51.93 -0.39 0.69 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.36 7.49 5.57 -40.82 -0.23 7.26 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -32.61 365.77 -8.34 -40.95 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.61 Total: 10.43 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.38 Total: 5.48 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.33 Total: -59.78 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.18 Total: -18.35 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.71 Total: 15.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.61 -8.34 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082632381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.046 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds