Wall clock time and date at job start Fri Apr 10 2020 18:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.64377 * 2 1 4 4 C 1.54336 * 110.85083 * 236.83477 * 2 1 3 5 5 N 1.47021 * 107.26930 * 219.67016 * 4 2 1 6 6 C 1.34776 * 125.65109 * 178.84846 * 5 4 2 7 7 O 1.21282 * 119.99589 * 359.71900 * 6 5 4 8 8 C 1.50696 * 119.99970 * 179.71975 * 6 5 4 9 9 C 1.53003 * 109.46768 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.29830 * 55.41744 * 9 8 6 11 11 C 1.52924 * 109.29785 * 174.99955 * 9 8 6 12 12 C 1.53345 * 108.80962 * 170.98323 * 11 9 8 13 13 C 1.53034 * 108.43937 * 292.69691 * 12 11 9 14 14 C 1.50176 * 110.00000 * 48.65734 * 13 12 11 15 15 O 1.21281 * 118.24314 * 162.50709 * 14 13 12 16 16 N 1.33346 * 123.51168 * 342.53834 * 14 13 12 17 17 C 1.47426 * 108.70131 * 358.59046 * 5 4 2 18 18 C 1.54905 * 104.83276 * 24.34906 * 17 5 4 19 19 H 1.09002 * 111.00421 * 81.06962 * 18 17 5 20 20 N 1.46502 * 111.00636 * 204.91631 * 18 17 5 21 21 C 1.36938 * 120.00223 * 273.55093 * 20 18 17 22 22 H 1.07989 * 120.00250 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99543 * 180.02562 * 21 20 18 24 24 N 1.31625 * 119.99857 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00560 * 359.97438 * 23 21 20 26 26 H 1.48491 * 109.47227 * 90.00190 * 25 23 21 27 27 H 1.48505 * 109.47243 * 210.00395 * 25 23 21 28 28 H 1.48498 * 109.47038 * 330.00221 * 25 23 21 29 29 H 1.09000 * 109.47471 * 296.85624 * 1 2 3 30 30 H 1.09000 * 109.47313 * 56.85906 * 1 2 3 31 31 H 1.09004 * 109.46968 * 176.86077 * 1 2 3 32 32 H 1.09002 * 109.99257 * 100.19621 * 4 2 1 33 33 H 1.08997 * 109.77877 * 339.02818 * 4 2 1 34 34 H 1.08997 * 109.47224 * 60.00146 * 8 6 5 35 35 H 1.08999 * 109.47234 * 299.99726 * 8 6 5 36 36 H 1.09002 * 109.60392 * 290.82261 * 11 9 8 37 37 H 1.08997 * 109.60486 * 51.14582 * 11 9 8 38 38 H 1.09000 * 109.67121 * 52.28399 * 12 11 9 39 39 H 1.08999 * 109.67683 * 172.81938 * 12 11 9 40 40 H 1.08998 * 109.24875 * 288.55747 * 13 12 11 41 41 H 1.09001 * 109.36721 * 168.83690 * 13 12 11 42 42 H 0.97007 * 117.95069 * 182.22230 * 16 14 13 43 43 H 1.08993 * 110.36871 * 143.19554 * 17 5 4 44 44 H 1.08999 * 110.36162 * 265.40467 * 17 5 4 45 45 H 0.97005 * 119.99544 * 93.54576 * 20 18 17 46 46 H 0.96993 * 120.00454 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0793 -0.7890 -1.2073 5 7 3.2445 -1.5519 -0.7365 6 6 3.9923 -2.3860 -1.4858 7 8 3.7192 -2.5607 -2.6545 8 6 5.1677 -3.1016 -0.8715 9 6 5.8397 -3.9796 -1.9291 10 1 6.1105 -3.3656 -2.7881 11 6 7.1029 -4.6063 -1.3374 12 6 7.6420 -5.6535 -2.3194 13 6 6.6452 -6.8127 -2.3862 14 6 5.2543 -6.2833 -2.5871 15 8 4.3998 -7.0491 -2.9799 16 7 4.9086 -5.0161 -2.3573 17 6 3.4633 -1.2487 0.6896 18 6 2.0790 -0.7934 1.2150 19 1 1.4452 -1.6512 1.4402 20 7 2.2215 0.0735 2.3874 21 6 2.3175 -0.4761 3.6379 22 1 2.2878 -1.5487 3.7601 23 6 2.4519 0.3455 4.7486 24 7 2.5447 -0.1828 5.9506 25 14 2.5026 2.2008 4.5375 26 1 1.1231 2.7452 4.6112 27 1 3.3293 2.7994 5.6163 28 1 3.0959 2.5327 3.2173 29 1 -0.3634 0.4642 0.9168 30 1 -0.3634 0.5618 -0.8605 31 1 -0.3633 -1.0262 -0.0563 32 1 2.3814 -0.1003 -1.9964 33 1 1.3156 -1.4714 -1.5804 34 1 4.8228 -3.7259 -0.0473 35 1 5.8839 -2.3697 -0.4980 36 1 7.8546 -3.8331 -1.1782 37 1 6.8635 -5.0846 -0.3877 38 1 7.7499 -5.2079 -3.3083 39 1 8.6090 -6.0179 -1.9730 40 1 6.6868 -7.3766 -1.4544 41 1 6.9071 -7.4672 -3.2176 42 1 3.9791 -4.7685 -2.4826 43 1 3.7961 -2.1406 1.2204 44 1 4.1946 -0.4479 0.7992 45 1 2.2479 1.0370 2.2777 46 1 2.6383 0.3912 6.7268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082632381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:14 Heat of formation + Delta-G solvation = -94.252068 kcal Electronic energy + Delta-G solvation = -26128.503951 eV Core-core repulsion = 22437.559995 eV Total energy + Delta-G solvation = -3690.943956 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.70338 -40.85320 -39.16156 -37.64241 -35.96273 -34.17558 -34.00558 -32.96132 -32.22125 -29.46859 -29.04703 -27.05698 -25.63759 -24.32881 -23.39553 -22.76684 -21.56624 -20.28548 -20.03788 -19.49484 -18.39919 -17.91813 -17.53147 -17.13834 -16.80283 -16.32817 -16.24517 -15.75487 -15.21092 -15.02138 -14.81468 -14.68616 -14.56771 -14.50747 -14.35724 -14.03337 -13.86869 -13.46721 -13.24069 -13.00761 -12.95614 -12.89464 -12.57203 -12.28539 -12.25170 -12.08544 -11.94354 -11.89324 -11.80319 -11.79170 -11.39315 -11.09197 -10.94272 -10.73371 -10.11362 -9.72804 -9.32370 -7.99869 -5.35526 1.42215 1.45187 1.52111 1.54193 1.60817 1.94523 2.33522 2.51090 3.23433 3.30354 3.53647 3.63560 3.67975 3.68556 3.85525 3.94206 4.02952 4.04232 4.21048 4.23835 4.34128 4.40500 4.53163 4.54779 4.62736 4.67844 4.70778 4.85402 4.88987 4.90669 4.99162 5.06792 5.08029 5.09239 5.12377 5.17451 5.30129 5.37208 5.43018 5.73457 5.79513 6.23203 6.40561 6.49589 7.04798 7.09205 7.18962 7.82109 8.01451 9.20918 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017495 B = 0.003201 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.105109 B = 8746.024272 C = 9595.354261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 H 0.091 0.909 4 C 0.117 3.883 5 N -0.613 5.613 6 C 0.520 3.480 7 O -0.580 6.580 8 C -0.147 4.147 9 C 0.156 3.844 10 H 0.080 0.920 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.131 4.131 14 C 0.508 3.492 15 O -0.622 6.622 16 N -0.708 5.708 17 C 0.085 3.915 18 C 0.172 3.828 19 H 0.058 0.942 20 N -0.735 5.735 21 C -0.230 4.230 22 H 0.061 0.939 23 C -0.058 4.058 24 N -0.981 5.981 25 Si 0.950 3.050 26 H -0.282 1.282 27 H -0.301 1.301 28 H -0.246 1.246 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.391 0.609 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.369 0.631 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.722 -3.398 -16.370 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 H 0.109 0.891 4 C -0.006 4.006 5 N -0.345 5.345 6 C 0.310 3.690 7 O -0.461 6.461 8 C -0.187 4.187 9 C 0.051 3.949 10 H 0.098 0.902 11 C -0.168 4.168 12 C -0.154 4.154 13 C -0.170 4.170 14 C 0.297 3.703 15 O -0.506 6.506 16 N -0.358 5.358 17 C -0.041 4.041 18 C 0.062 3.938 19 H 0.076 0.924 20 N -0.377 5.377 21 C -0.361 4.361 22 H 0.079 0.921 23 C -0.249 4.249 24 N -0.631 5.631 25 Si 0.778 3.222 26 H -0.209 1.209 27 H -0.228 1.228 28 H -0.170 1.170 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.155 0.845 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.122 0.878 42 H 0.226 0.774 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.203 0.797 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.444 -4.114 -17.008 20.378 hybrid contribution -0.817 1.193 0.514 1.535 sum 9.627 -2.921 -16.494 19.320 Atomic orbital electron populations 1.21676 0.92838 1.02265 1.02412 1.22445 0.97405 0.99594 0.92973 0.89079 1.21990 0.87590 0.94465 0.96562 1.48579 1.30107 1.43863 1.11969 1.20901 0.84112 0.78353 0.85604 1.90682 1.72334 1.65380 1.17729 1.22193 0.96139 1.00476 0.99921 1.20934 0.89655 0.87858 0.96466 0.90215 1.22024 0.95187 1.00240 0.99371 1.21659 0.99035 0.94254 1.00432 1.21701 0.89036 1.00335 1.05971 1.21067 0.92396 0.81455 0.75418 1.90719 1.53343 1.56692 1.49822 1.45900 1.13644 1.09134 1.67166 1.23151 1.00611 1.01340 0.78988 1.21468 0.93346 0.93322 0.85707 0.92356 1.42534 1.88767 1.04512 1.01935 1.18972 1.40906 0.92679 0.83564 0.92132 1.25443 1.02419 1.02354 0.94729 1.69874 1.58786 1.35979 0.98492 0.85493 0.77698 0.81039 0.78011 1.20885 1.22766 1.17009 0.92782 0.90614 0.92621 0.90886 0.91556 0.87551 0.84469 0.86785 0.90008 0.91071 0.87458 0.86844 0.87759 0.77358 0.90538 0.90619 0.79663 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.16 71.98 0.66 -2.46 16 2 C -0.10 -2.63 3.16 -9.60 -0.03 -2.66 16 3 H 0.09 2.19 7.99 -2.39 -0.02 2.17 16 4 C 0.12 2.86 6.48 86.73 0.56 3.42 16 5 N -0.61 -15.67 3.33 -811.79 -2.70 -18.37 16 6 C 0.52 13.10 7.49 87.66 0.66 13.76 16 7 O -0.58 -18.03 14.82 -3.04 -0.04 -18.07 16 8 C -0.15 -2.55 4.36 29.85 0.13 -2.42 16 9 C 0.16 2.57 2.66 45.11 0.12 2.69 16 10 H 0.08 1.40 7.96 -2.39 -0.02 1.38 16 11 C -0.13 -1.24 5.29 30.68 0.16 -1.08 16 12 C -0.12 -1.04 6.04 30.72 0.19 -0.86 16 13 C -0.13 -1.93 6.03 29.70 0.18 -1.75 16 14 C 0.51 12.87 7.72 87.71 0.68 13.55 16 15 O -0.62 -22.24 17.78 -3.03 -0.05 -22.29 16 16 N -0.71 -16.76 5.00 -446.63 -2.23 -18.99 16 17 C 0.08 2.32 6.38 86.85 0.55 2.88 16 18 C 0.17 5.50 3.14 46.38 0.15 5.65 16 19 H 0.06 2.06 8.04 -2.39 -0.02 2.04 16 20 N -0.73 -29.54 5.08 -316.39 -1.61 -31.15 16 21 C -0.23 -11.79 10.47 84.03 0.88 -10.91 16 22 H 0.06 3.43 8.06 -2.92 -0.02 3.41 16 23 C -0.06 -3.13 5.50 84.86 0.47 -2.67 16 24 N -0.98 -59.39 13.97 21.65 0.30 -59.09 16 25 Si 0.95 41.80 27.74 68.60 1.90 43.70 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 27 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.25 -9.43 6.52 99.48 0.65 -8.78 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.29 8.07 -2.39 -0.02 1.27 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.66 7.77 -2.39 -0.02 1.65 16 34 H 0.11 1.83 7.85 -2.39 -0.02 1.81 16 35 H 0.14 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.08 0.77 8.11 -2.39 -0.02 0.75 16 38 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 39 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.39 11.30 6.84 -92.70 -0.63 10.67 16 43 H 0.08 2.09 7.48 -2.39 -0.02 2.07 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.37 14.22 5.57 -92.70 -0.52 13.71 16 46 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -73.55 365.77 0.68 -72.86 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.23 Total: 34.26 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 5.35 Total: 17.13 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -6.24 Total: -127.59 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.10 Total: -40.36 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.90 Total: 43.70 kcal Total: -73.55 0.68 -72.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082632381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.388 kcal (2) G-P(sol) polarization free energy of solvation -73.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds