Wall clock time and date at job start Fri Apr 10 2020 18:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.91325 * 2 1 4 4 C 1.54910 * 111.00252 * 236.09711 * 2 1 3 5 5 N 1.47424 * 104.83205 * 204.91693 * 4 2 1 6 6 C 1.34776 * 125.64967 * 204.17048 * 5 4 2 7 7 O 1.21283 * 119.99616 * 354.92105 * 6 5 4 8 8 C 1.50697 * 119.99976 * 174.93047 * 6 5 4 9 9 H 1.08996 * 108.56648 * 336.99068 * 8 6 5 10 10 C 1.51779 * 108.61278 * 219.05631 * 8 6 5 11 11 C 1.53075 * 110.84783 * 171.74028 * 10 8 6 12 12 N 1.47190 * 108.52240 * 86.65623 * 11 10 8 13 13 C 1.33369 * 120.43522 * 287.99742 * 12 11 10 14 14 O 1.21277 * 119.90009 * 180.29940 * 13 12 11 15 15 C 1.51429 * 120.20998 * 0.31949 * 13 12 11 16 16 C 1.51797 * 108.61918 * 94.92842 * 8 6 5 17 17 C 1.47029 * 108.70243 * 24.12354 * 5 4 2 18 18 C 1.54322 * 107.27042 * 358.94593 * 17 5 4 19 19 H 1.09004 * 110.71741 * 96.34432 * 18 17 5 20 20 N 1.46499 * 110.72013 * 219.43718 * 18 17 5 21 21 C 1.36937 * 120.00193 * 273.54967 * 20 18 17 22 22 H 1.07999 * 119.99737 * 359.97438 * 21 20 18 23 23 C 1.38813 * 119.99733 * 179.72480 * 21 20 18 24 24 N 1.31621 * 119.99943 * 0.27031 * 23 21 20 25 25 Si 1.86804 * 119.99665 * 180.27480 * 23 21 20 26 26 H 1.48496 * 109.47250 * 59.99736 * 25 23 21 27 27 H 1.48500 * 109.46988 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.46835 * 299.99629 * 25 23 21 29 29 H 1.09004 * 109.46905 * 296.09919 * 1 2 3 30 30 H 1.08996 * 109.47225 * 56.10023 * 1 2 3 31 31 H 1.09000 * 109.47040 * 176.09850 * 1 2 3 32 32 H 1.08997 * 110.36905 * 86.07572 * 4 2 1 33 33 H 1.08996 * 110.45932 * 323.79738 * 4 2 1 34 34 H 1.08998 * 109.19705 * 292.24157 * 10 8 6 35 35 H 1.08999 * 109.19510 * 51.52283 * 10 8 6 36 36 H 1.09005 * 109.69157 * 326.93965 * 11 10 8 37 37 H 1.09002 * 109.80637 * 206.44234 * 11 10 8 38 38 H 0.97003 * 119.78360 * 108.01577 * 12 11 10 39 39 H 1.09001 * 109.63537 * 311.51808 * 15 13 12 40 40 H 1.09000 * 109.63507 * 190.92231 * 15 13 12 41 41 H 1.09005 * 109.21813 * 308.26263 * 16 8 6 42 42 H 1.09000 * 109.21748 * 67.64671 * 16 8 6 43 43 H 1.08995 * 109.88306 * 239.52465 * 17 5 4 44 44 H 1.09000 * 109.87842 * 118.36111 * 17 5 4 45 45 H 0.96998 * 119.99517 * 93.54437 * 20 18 17 46 46 H 0.97006 * 119.99417 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4481 -1.5603 -1.5940 7 8 4.2755 -1.5869 -2.7942 8 6 5.8039 -1.8820 -1.0203 9 1 5.8807 -1.4249 -0.0338 10 6 6.8664 -1.2761 -1.9191 11 6 8.2524 -1.3946 -1.2803 12 7 8.8230 -2.7028 -1.6404 13 6 8.3421 -3.8220 -1.0975 14 8 8.8230 -4.8943 -1.3970 15 6 7.1971 -3.7584 -0.1086 16 6 5.9205 -3.3877 -0.8672 17 6 3.4674 -1.2741 0.6961 18 6 2.0861 -0.8079 1.2022 19 1 1.4479 -1.6632 1.4240 20 7 2.2286 0.0496 2.3815 21 6 2.3034 -0.5092 3.6294 22 1 2.2569 -1.5821 3.7443 23 6 2.4441 0.3030 4.7463 24 7 2.5003 1.6106 4.6062 25 14 2.5538 -0.4597 6.4480 26 1 3.7308 -1.3630 6.5106 27 1 2.7000 0.6141 7.4632 28 1 1.3185 -1.2365 6.7227 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5731 -0.8529 31 1 -0.3633 -1.0253 -0.0699 32 1 2.1559 -0.1721 -2.0837 33 1 1.4525 -1.6704 -1.4042 34 1 6.8649 -1.7964 -2.8768 35 1 6.6385 -0.2230 -2.0838 36 1 8.1650 -1.3196 -0.1964 37 1 8.8991 -0.5991 -1.6508 38 1 9.5537 -2.7512 -2.2765 39 1 7.4072 -3.0011 0.6468 40 1 7.0706 -4.7303 0.3684 41 1 5.0557 -3.7606 -0.3182 42 1 5.9442 -3.8481 -1.8549 43 1 4.2426 -0.5997 1.0599 44 1 3.6650 -2.2893 1.0401 45 1 2.2701 1.0132 2.2783 46 1 2.5991 2.1781 5.3867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082665023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:17 Heat of formation + Delta-G solvation = -71.246257 kcal Electronic energy + Delta-G solvation = -26561.552533 eV Core-core repulsion = 22871.606183 eV Total energy + Delta-G solvation = -3689.946350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.74948 -39.67855 -37.87041 -36.44571 -34.21060 -34.05775 -32.46690 -31.33101 -30.78017 -27.85446 -27.52543 -25.86651 -24.37526 -24.04485 -22.03895 -21.07680 -20.03423 -19.96734 -18.94119 -17.48021 -17.41783 -17.19563 -16.46590 -16.03168 -15.40461 -15.11089 -14.70142 -14.35150 -14.12293 -13.91833 -13.77609 -13.57087 -13.26431 -13.15114 -12.82240 -12.73186 -12.53297 -12.33054 -12.24529 -11.86682 -11.72099 -11.61218 -11.21350 -11.20158 -10.98116 -10.94606 -10.74618 -10.67555 -10.34821 -10.04968 -9.96195 -9.83251 -9.64883 -9.32088 -9.06243 -8.40369 -7.17306 -5.92209 -3.23440 2.47002 2.73646 3.10297 3.11483 3.34585 3.40240 3.40849 4.24008 4.34364 4.44381 4.48123 4.56790 4.84479 4.91986 4.97095 5.07413 5.13170 5.15492 5.19862 5.28982 5.34514 5.47803 5.49503 5.56226 5.65461 5.70497 5.74461 5.77089 5.83678 5.91311 5.94048 6.02055 6.13297 6.18774 6.30232 6.40099 6.48745 6.55462 6.58582 6.79293 7.03748 7.55731 7.72537 8.05810 8.24536 8.28415 9.37330 9.90523 10.25456 11.29467 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012370 B = 0.003998 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.938128 B = 7002.288922 C = 8541.964128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.083 0.917 4 C 0.113 3.887 5 N -0.611 5.611 6 C 0.530 3.470 7 O -0.553 6.553 8 C -0.104 4.104 9 H 0.095 0.905 10 C -0.125 4.125 11 C 0.108 3.892 12 N -0.724 5.724 13 C 0.520 3.480 14 O -0.556 6.556 15 C -0.137 4.137 16 C -0.100 4.100 17 C 0.071 3.929 18 C 0.177 3.823 19 H 0.066 0.934 20 N -0.711 5.711 21 C -0.251 4.251 22 H 0.072 0.928 23 C -0.006 4.006 24 N -0.929 5.929 25 Si 0.907 3.093 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.399 0.601 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.387 0.613 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.461 -3.780 -11.045 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.010 4.010 5 N -0.344 5.344 6 C 0.318 3.682 7 O -0.432 6.432 8 C -0.126 4.126 9 H 0.114 0.886 10 C -0.164 4.164 11 C -0.016 4.016 12 N -0.376 5.376 13 C 0.307 3.693 14 O -0.434 6.434 15 C -0.177 4.177 16 C -0.138 4.138 17 C -0.055 4.055 18 C 0.065 3.935 19 H 0.084 0.916 20 N -0.351 5.351 21 C -0.381 4.381 22 H 0.090 0.910 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.737 3.263 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.235 0.765 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.221 0.779 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.498 -4.434 -11.528 13.956 hybrid contribution 0.367 0.106 0.836 0.919 sum 6.865 -4.328 -10.692 13.423 Atomic orbital electron populations 1.21613 0.93847 1.01580 1.02121 1.22618 0.96359 0.99749 0.94562 0.89823 1.22262 0.82971 0.98058 0.97682 1.48611 1.11973 1.65669 1.08177 1.20252 0.85278 0.76608 0.86083 1.90669 1.84076 1.53414 1.15012 1.20984 0.92683 0.97466 1.01444 0.88644 1.21692 0.92835 1.02268 0.99586 1.21838 0.94410 0.84371 1.00962 1.45978 1.38184 1.06882 1.46586 1.20612 0.83705 0.83403 0.81624 1.90746 1.60866 1.28843 1.62961 1.21995 0.92931 1.05280 0.97544 1.21100 0.97335 0.93630 1.01752 1.23379 1.03451 1.01246 0.77391 1.21245 0.91541 0.93860 0.86904 0.91596 1.42352 1.86978 1.05280 1.00522 1.19185 1.43441 0.91904 0.83605 0.91025 1.24751 1.02208 0.95330 0.97966 1.69649 1.56225 1.02315 1.29416 0.86286 0.77987 0.77898 0.84090 1.21140 1.21645 1.21123 0.91300 0.93165 0.92830 0.91093 0.91693 0.89938 0.90082 0.90021 0.88958 0.76473 0.88674 0.87924 0.89927 0.90767 0.90705 0.92199 0.77860 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.31 37.16 0.35 -1.42 16 2 C -0.11 -1.65 3.25 -88.47 -0.29 -1.94 16 3 H 0.08 1.30 8.00 -51.93 -0.42 0.88 16 4 C 0.11 1.58 6.36 -2.53 -0.02 1.56 16 5 N -0.61 -8.88 3.33 -170.52 -0.57 -9.44 16 6 C 0.53 7.69 6.64 -10.99 -0.07 7.61 16 7 O -0.55 -9.70 16.72 5.56 0.09 -9.61 16 8 C -0.10 -1.15 1.72 -93.00 -0.16 -1.31 16 9 H 0.10 0.99 6.50 -51.93 -0.34 0.66 16 10 C -0.13 -1.19 4.57 -27.31 -0.12 -1.31 16 11 C 0.11 0.76 6.48 -3.63 -0.02 0.74 16 12 N -0.72 -6.39 5.27 -59.85 -0.32 -6.70 16 13 C 0.52 6.10 7.06 -11.25 -0.08 6.02 16 14 O -0.56 -8.85 17.92 5.56 0.10 -8.75 16 15 C -0.14 -1.35 5.57 -27.50 -0.15 -1.50 16 16 C -0.10 -1.07 4.89 -27.31 -0.13 -1.20 16 17 C 0.07 1.09 5.92 -3.06 -0.02 1.07 16 18 C 0.18 3.03 3.06 -66.10 -0.20 2.83 16 19 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16 20 N -0.71 -15.63 5.18 -51.65 -0.27 -15.89 16 21 C -0.25 -6.23 9.98 -15.06 -0.15 -6.38 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 24 N -0.93 -25.96 13.06 55.49 0.72 -25.24 16 25 Si 0.91 20.80 29.55 -169.99 -5.02 15.78 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.06 0.86 7.99 -51.93 -0.41 0.45 16 34 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 35 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 36 H 0.08 0.53 6.71 -51.93 -0.35 0.18 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.40 3.07 8.91 -40.82 -0.36 2.71 16 39 H 0.09 0.78 6.77 -51.93 -0.35 0.43 16 40 H 0.10 0.99 8.13 -51.93 -0.42 0.57 16 41 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 42 H 0.07 0.89 7.86 -51.93 -0.41 0.49 16 43 H 0.07 1.22 7.49 -51.93 -0.39 0.83 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.39 9.19 7.71 -40.82 -0.31 8.88 16 46 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -31.72 365.73 -8.43 -40.15 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -7.51 Total: 9.67 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.17 Total: 4.52 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.43 Total: -57.28 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.19 Total: -18.36 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.72 -8.43 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082665023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.097 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds