Wall clock time and date at job start Fri Apr 10 2020 18:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.64450 * 2 1 4 4 C 1.54327 * 110.87225 * 236.75275 * 2 1 3 5 5 N 1.47024 * 107.26881 * 219.37086 * 4 2 1 6 6 C 1.34779 * 125.64637 * 178.90057 * 5 4 2 7 7 O 1.21278 * 119.99937 * 174.99124 * 6 5 4 8 8 C 1.50700 * 120.00069 * 354.98733 * 6 5 4 9 9 H 1.08998 * 108.56653 * 333.01262 * 8 6 5 10 10 C 1.51774 * 108.61707 * 90.81295 * 8 6 5 11 11 C 1.53026 * 110.87872 * 188.12245 * 10 8 6 12 12 N 1.47197 * 108.64355 * 273.53234 * 11 10 8 13 13 C 1.33364 * 120.43262 * 71.98732 * 12 11 10 14 14 O 1.21285 * 119.89246 * 179.66099 * 13 12 11 15 15 C 1.51428 * 120.21426 * 359.67653 * 13 12 11 16 16 C 1.51795 * 108.61500 * 215.07639 * 8 6 5 17 17 C 1.47470 * 108.72682 * 358.97594 * 5 4 2 18 18 C 1.54913 * 104.80764 * 24.06619 * 17 5 4 19 19 H 1.09006 * 111.00306 * 81.13767 * 18 17 5 20 20 N 1.46501 * 111.00071 * 204.95032 * 18 17 5 21 21 C 1.36937 * 119.99707 * 270.41729 * 20 18 17 22 22 H 1.07995 * 120.00603 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99318 * 179.72754 * 21 20 18 24 24 N 1.31617 * 120.00391 * 0.28079 * 23 21 20 25 25 Si 1.86795 * 119.99773 * 180.27591 * 23 21 20 26 26 H 1.48505 * 109.47203 * 60.00257 * 25 23 21 27 27 H 1.48501 * 109.47493 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47384 * 300.00425 * 25 23 21 29 29 H 1.08996 * 109.47024 * 296.85596 * 1 2 3 30 30 H 1.09000 * 109.46878 * 56.86099 * 1 2 3 31 31 H 1.09005 * 109.46990 * 176.85794 * 1 2 3 32 32 H 1.08994 * 109.88459 * 338.78573 * 4 2 1 33 33 H 1.09000 * 109.88395 * 99.95766 * 4 2 1 34 34 H 1.09003 * 109.19797 * 308.48319 * 10 8 6 35 35 H 1.09006 * 109.19269 * 67.75582 * 10 8 6 36 36 H 1.09002 * 109.62469 * 153.78255 * 11 10 8 37 37 H 1.09003 * 109.61467 * 33.27433 * 11 10 8 38 38 H 0.96999 * 119.78348 * 251.95993 * 12 11 10 39 39 H 1.08997 * 109.63408 * 169.08425 * 15 13 12 40 40 H 1.08991 * 109.80113 * 48.58112 * 15 13 12 41 41 H 1.08999 * 109.22584 * 292.38923 * 16 8 6 42 42 H 1.08999 * 109.22260 * 51.78205 * 16 8 6 43 43 H 1.09002 * 110.34399 * 265.25206 * 17 5 4 44 44 H 1.08996 * 110.40870 * 142.91623 * 17 5 4 45 45 H 0.96993 * 119.99537 * 90.42844 * 20 18 17 46 46 H 0.97005 * 120.00264 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2060 5 7 3.2494 -1.5470 -0.7353 6 6 3.9996 -2.3796 -1.4841 7 8 4.9983 -2.8830 -1.0151 8 6 3.5973 -2.6850 -2.9039 9 1 2.5169 -2.5705 -2.9908 10 6 4.2639 -1.6782 -3.8236 11 6 3.7359 -1.8128 -5.2535 12 7 4.5248 -2.8409 -5.9516 13 6 4.3753 -4.1304 -5.6457 14 8 5.0259 -4.9699 -6.2314 15 6 3.3958 -4.5498 -4.5697 16 6 3.9579 -4.1273 -3.2101 17 6 3.4652 -1.2455 0.6920 18 6 2.0790 -0.7933 1.2151 19 1 1.4465 -1.6525 1.4387 20 7 2.2176 0.0728 2.3885 21 6 2.2475 -0.4743 3.6435 22 1 2.1694 -1.5442 3.7683 23 6 2.3846 0.3460 4.7550 24 7 2.4801 1.6498 4.6029 25 14 2.4332 -0.4008 6.4665 26 1 3.5830 -1.3353 6.5664 27 1 2.5853 0.6796 7.4739 28 1 1.1708 -1.1405 6.7199 29 1 -0.3633 0.4642 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0262 -0.0563 32 1 1.3191 -1.4773 -1.5770 33 1 2.3775 -0.1015 -1.9963 34 1 4.0607 -0.6710 -3.4598 35 1 5.3405 -1.8488 -3.8213 36 1 3.8370 -0.8594 -5.7723 37 1 2.6874 -2.1097 -5.2300 38 1 5.1571 -2.5789 -6.6389 39 1 3.2677 -5.6319 -4.5927 40 1 2.4346 -4.0636 -4.7356 41 1 5.0429 -4.2312 -3.2224 42 1 3.5445 -4.7729 -2.4353 43 1 4.1934 -0.4422 0.8038 44 1 3.7985 -2.1373 1.2226 45 1 2.2880 1.0336 2.2764 46 1 2.5763 2.2230 5.3796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082665024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:20 Heat of formation + Delta-G solvation = -70.327968 kcal Electronic energy + Delta-G solvation = -26316.445211 eV Core-core repulsion = 22626.538681 eV Total energy + Delta-G solvation = -3689.906530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83592 -39.72416 -37.88583 -36.57231 -34.24275 -34.06264 -32.45386 -31.50871 -30.75242 -28.27101 -26.97432 -26.18087 -24.49793 -23.96335 -22.10064 -21.11207 -20.10386 -19.96291 -19.05165 -17.63939 -17.52852 -17.17632 -16.50728 -16.13703 -15.38980 -15.03463 -14.86260 -14.33967 -14.15881 -14.00518 -13.75602 -13.69557 -13.22337 -13.08977 -12.99955 -12.87102 -12.69651 -12.53215 -12.14757 -11.91753 -11.71934 -11.66233 -11.18724 -11.16793 -11.09986 -11.03855 -10.78925 -10.69156 -10.31087 -10.05576 -10.00811 -9.81812 -9.70793 -9.38056 -9.03179 -8.40725 -7.11791 -5.87746 -3.18478 2.37470 2.71824 2.98011 3.09241 3.39501 3.44504 3.45156 4.13605 4.24901 4.31720 4.39915 4.50633 4.75111 4.78454 4.84296 4.93656 5.00630 5.05932 5.08065 5.14189 5.25107 5.39870 5.42612 5.46438 5.56080 5.61765 5.66659 5.76373 5.80775 5.82537 5.94082 5.96878 6.11532 6.20063 6.34414 6.42864 6.47116 6.52400 6.55850 6.84214 6.92178 7.61557 7.72445 7.95047 8.28172 8.30899 9.41924 9.94554 10.29357 11.34087 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.002865 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.430779 B = 9770.387768 C =10254.715573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.108 3.892 5 N -0.613 5.613 6 C 0.525 3.475 7 O -0.543 6.543 8 C -0.102 4.102 9 H 0.091 0.909 10 C -0.133 4.133 11 C 0.112 3.888 12 N -0.725 5.725 13 C 0.519 3.481 14 O -0.554 6.554 15 C -0.137 4.137 16 C -0.098 4.098 17 C 0.080 3.920 18 C 0.177 3.823 19 H 0.066 0.934 20 N -0.709 5.709 21 C -0.249 4.249 22 H 0.072 0.928 23 C -0.007 4.007 24 N -0.930 5.930 25 Si 0.908 3.092 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.400 0.600 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 -4.014 -21.165 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.016 4.016 5 N -0.347 5.347 6 C 0.312 3.688 7 O -0.420 6.420 8 C -0.124 4.124 9 H 0.109 0.891 10 C -0.172 4.172 11 C -0.013 4.013 12 N -0.378 5.378 13 C 0.306 3.694 14 O -0.431 6.431 15 C -0.177 4.177 16 C -0.136 4.136 17 C -0.045 4.045 18 C 0.065 3.935 19 H 0.084 0.916 20 N -0.349 5.349 21 C -0.380 4.380 22 H 0.090 0.910 23 C -0.204 4.204 24 N -0.577 5.577 25 Si 0.739 3.261 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.236 0.764 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.221 0.779 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.906 -4.902 -20.890 21.654 hybrid contribution 0.341 0.301 0.793 0.915 sum -2.565 -4.600 -20.097 20.776 Atomic orbital electron populations 1.21669 0.93858 1.01507 1.02153 1.22487 0.96438 0.99904 0.94605 0.89714 1.22126 0.87574 0.94439 0.97445 1.48612 1.29675 1.43891 1.12480 1.20222 0.82963 0.78384 0.87184 1.90712 1.25585 1.52154 1.73528 1.20979 1.02133 0.96550 0.92696 0.89121 1.21779 1.02027 0.99303 0.94103 1.21783 0.95670 0.91738 0.92068 1.45975 1.43871 1.06668 1.41256 1.20618 0.83371 0.82141 0.83257 1.90759 1.48002 1.50889 1.53496 1.22000 0.98297 1.03931 0.93519 1.21074 1.03008 0.94151 0.95361 1.23452 1.01776 1.00927 0.78347 1.21378 0.91915 0.93592 0.86639 0.91625 1.42269 1.86831 1.05458 1.00340 1.19196 1.43288 0.92185 0.83302 0.91039 1.24754 1.02209 0.95382 0.98039 1.69643 1.56275 1.02281 1.29544 0.86259 0.77977 0.77845 0.84043 1.21096 1.21628 1.21125 0.91259 0.93214 0.92895 0.91562 0.91898 0.89827 0.90157 0.88902 0.90119 0.76381 0.88055 0.89063 0.90241 0.89979 0.91546 0.91189 0.77877 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.17 37.16 0.34 -1.27 16 2 C -0.11 -1.55 3.18 -88.79 -0.28 -1.83 16 3 H 0.08 1.21 8.00 -51.93 -0.42 0.79 16 4 C 0.11 1.17 5.82 -3.06 -0.02 1.15 16 5 N -0.61 -8.72 3.33 -170.48 -0.57 -9.29 16 6 C 0.52 7.48 6.69 -10.98 -0.07 7.41 16 7 O -0.54 -10.19 16.63 5.56 0.09 -10.10 16 8 C -0.10 -0.94 1.65 -93.01 -0.15 -1.09 16 9 H 0.09 0.62 6.63 -51.93 -0.34 0.28 16 10 C -0.13 -0.98 4.97 -27.34 -0.14 -1.12 16 11 C 0.11 0.53 6.47 -3.65 -0.02 0.50 16 12 N -0.73 -5.20 5.27 -59.88 -0.32 -5.51 16 13 C 0.52 5.32 7.06 -11.26 -0.08 5.24 16 14 O -0.55 -8.16 17.92 5.55 0.10 -8.06 16 15 C -0.14 -1.09 5.57 -27.49 -0.15 -1.24 16 16 C -0.10 -0.95 4.45 -27.31 -0.12 -1.07 16 17 C 0.08 1.44 6.59 -2.50 -0.02 1.43 16 18 C 0.18 3.19 3.14 -65.78 -0.21 2.98 16 19 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 20 N -0.71 -16.41 5.26 -51.35 -0.27 -16.68 16 21 C -0.25 -6.56 9.97 -15.06 -0.15 -6.71 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 24 N -0.93 -26.91 13.06 55.49 0.72 -26.18 16 25 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.07 0.58 7.24 -51.93 -0.38 0.21 16 33 H 0.06 0.55 7.77 -51.93 -0.40 0.14 16 34 H 0.08 0.57 7.72 -51.93 -0.40 0.17 16 35 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.28 6.71 -51.93 -0.35 -0.07 16 38 H 0.40 2.53 8.91 -40.82 -0.36 2.16 16 39 H 0.10 0.80 8.13 -51.93 -0.42 0.38 16 40 H 0.09 0.49 6.78 -51.93 -0.35 0.13 16 41 H 0.08 0.96 7.75 -51.93 -0.40 0.56 16 42 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 45 H 0.39 9.49 7.73 -40.82 -0.32 9.17 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -34.11 364.97 -8.40 -42.51 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.48 Total: 6.97 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.17 Total: 4.08 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.43 Total: -57.67 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.19 Total: -18.15 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.11 -8.40 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082665024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.818 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds