Wall clock time and date at job start Fri Apr 10 2020 18:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.64450 * 2 1 4 4 C 1.54327 * 110.87225 * 236.75275 * 2 1 3 5 5 N 1.47024 * 107.26881 * 219.37086 * 4 2 1 6 6 C 1.34779 * 125.64637 * 178.90057 * 5 4 2 7 7 O 1.21278 * 119.99937 * 174.99124 * 6 5 4 8 8 C 1.50700 * 120.00069 * 354.98733 * 6 5 4 9 9 H 1.08998 * 108.56653 * 333.01262 * 8 6 5 10 10 C 1.51774 * 108.61707 * 90.81295 * 8 6 5 11 11 C 1.53026 * 110.87872 * 188.12245 * 10 8 6 12 12 N 1.47197 * 108.64355 * 273.53234 * 11 10 8 13 13 C 1.33364 * 120.43262 * 71.98732 * 12 11 10 14 14 O 1.21285 * 119.89246 * 179.66099 * 13 12 11 15 15 C 1.51428 * 120.21426 * 359.67653 * 13 12 11 16 16 C 1.51795 * 108.61500 * 215.07639 * 8 6 5 17 17 C 1.47470 * 108.72682 * 358.97594 * 5 4 2 18 18 C 1.54913 * 104.80764 * 24.06619 * 17 5 4 19 19 H 1.09006 * 111.00306 * 81.13767 * 18 17 5 20 20 N 1.46501 * 111.00071 * 204.95032 * 18 17 5 21 21 C 1.36937 * 119.99707 * 270.41729 * 20 18 17 22 22 H 1.07995 * 120.00603 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99318 * 179.72754 * 21 20 18 24 24 N 1.31617 * 120.00391 * 0.28079 * 23 21 20 25 25 Si 1.86795 * 119.99773 * 180.27591 * 23 21 20 26 26 H 1.48505 * 109.47203 * 60.00257 * 25 23 21 27 27 H 1.48501 * 109.47493 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47384 * 300.00425 * 25 23 21 29 29 H 1.08996 * 109.47024 * 296.85596 * 1 2 3 30 30 H 1.09000 * 109.46878 * 56.86099 * 1 2 3 31 31 H 1.09005 * 109.46990 * 176.85794 * 1 2 3 32 32 H 1.08994 * 109.88459 * 338.78573 * 4 2 1 33 33 H 1.09000 * 109.88395 * 99.95766 * 4 2 1 34 34 H 1.09003 * 109.19797 * 308.48319 * 10 8 6 35 35 H 1.09006 * 109.19269 * 67.75582 * 10 8 6 36 36 H 1.09002 * 109.62469 * 153.78255 * 11 10 8 37 37 H 1.09003 * 109.61467 * 33.27433 * 11 10 8 38 38 H 0.96999 * 119.78348 * 251.95993 * 12 11 10 39 39 H 1.08997 * 109.63408 * 169.08425 * 15 13 12 40 40 H 1.08991 * 109.80113 * 48.58112 * 15 13 12 41 41 H 1.08999 * 109.22584 * 292.38923 * 16 8 6 42 42 H 1.08999 * 109.22260 * 51.78205 * 16 8 6 43 43 H 1.09002 * 110.34399 * 265.25206 * 17 5 4 44 44 H 1.08996 * 110.40870 * 142.91623 * 17 5 4 45 45 H 0.96993 * 119.99537 * 90.42844 * 20 18 17 46 46 H 0.97005 * 120.00264 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2060 5 7 3.2494 -1.5470 -0.7353 6 6 3.9996 -2.3796 -1.4841 7 8 4.9983 -2.8830 -1.0151 8 6 3.5973 -2.6850 -2.9039 9 1 2.5169 -2.5705 -2.9908 10 6 4.2639 -1.6782 -3.8236 11 6 3.7359 -1.8128 -5.2535 12 7 4.5248 -2.8409 -5.9516 13 6 4.3753 -4.1304 -5.6457 14 8 5.0259 -4.9699 -6.2314 15 6 3.3958 -4.5498 -4.5697 16 6 3.9579 -4.1273 -3.2101 17 6 3.4652 -1.2455 0.6920 18 6 2.0790 -0.7933 1.2151 19 1 1.4465 -1.6525 1.4387 20 7 2.2176 0.0728 2.3885 21 6 2.2475 -0.4743 3.6435 22 1 2.1694 -1.5442 3.7683 23 6 2.3846 0.3460 4.7550 24 7 2.4801 1.6498 4.6029 25 14 2.4332 -0.4008 6.4665 26 1 3.5830 -1.3353 6.5664 27 1 2.5853 0.6796 7.4739 28 1 1.1708 -1.1405 6.7199 29 1 -0.3633 0.4642 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0262 -0.0563 32 1 1.3191 -1.4773 -1.5770 33 1 2.3775 -0.1015 -1.9963 34 1 4.0607 -0.6710 -3.4598 35 1 5.3405 -1.8488 -3.8213 36 1 3.8370 -0.8594 -5.7723 37 1 2.6874 -2.1097 -5.2300 38 1 5.1571 -2.5789 -6.6389 39 1 3.2677 -5.6319 -4.5927 40 1 2.4346 -4.0636 -4.7356 41 1 5.0429 -4.2312 -3.2224 42 1 3.5445 -4.7729 -2.4353 43 1 4.1934 -0.4422 0.8038 44 1 3.7985 -2.1373 1.2226 45 1 2.2880 1.0336 2.2764 46 1 2.5763 2.2230 5.3796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082665024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:19 Heat of formation + Delta-G solvation = -96.451608 kcal Electronic energy + Delta-G solvation = -26317.578017 eV Core-core repulsion = 22626.538681 eV Total energy + Delta-G solvation = -3691.039336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.72511 -40.71505 -39.09856 -37.43915 -35.94007 -34.82889 -33.81033 -32.45944 -32.19354 -29.56498 -27.93309 -27.13367 -25.90997 -25.03776 -23.32300 -22.02925 -21.32334 -20.73159 -20.07185 -19.14045 -18.49725 -18.20399 -17.50633 -17.29547 -16.54597 -16.31011 -15.85808 -15.59485 -15.37096 -14.99546 -14.80662 -14.63449 -14.54429 -14.43187 -14.18103 -13.79558 -13.54626 -13.30668 -13.15123 -13.00661 -12.87084 -12.85736 -12.80266 -12.41821 -12.25876 -12.14349 -11.99634 -11.88988 -11.72393 -11.64788 -11.35465 -10.98739 -10.87682 -10.77463 -10.08681 -9.63628 -9.05645 -7.97926 -5.26944 1.46462 1.48692 1.54227 1.55188 1.69101 1.97280 2.42891 2.54577 3.31652 3.40487 3.48541 3.61526 3.68176 3.82409 3.90126 4.04780 4.19735 4.23967 4.27294 4.36472 4.40854 4.48434 4.50746 4.53706 4.64955 4.67586 4.72274 4.78294 4.94161 4.96739 5.00366 5.01108 5.11438 5.17513 5.21971 5.24139 5.32563 5.40308 5.51667 5.58442 5.92171 6.24186 6.30203 6.61406 7.16147 7.26544 7.31575 8.04298 8.27610 9.24457 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.002865 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.430779 B = 9770.387768 C =10254.715573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 H 0.077 0.923 4 C 0.108 3.892 5 N -0.611 5.611 6 C 0.518 3.482 7 O -0.600 6.600 8 C -0.089 4.089 9 H 0.134 0.866 10 C -0.132 4.132 11 C 0.114 3.886 12 N -0.716 5.716 13 C 0.511 3.489 14 O -0.611 6.611 15 C -0.126 4.126 16 C -0.094 4.094 17 C 0.090 3.910 18 C 0.171 3.829 19 H 0.061 0.939 20 N -0.720 5.720 21 C -0.246 4.246 22 H 0.072 0.928 23 C -0.067 4.067 24 N -0.964 5.964 25 Si 0.967 3.033 26 H -0.284 1.284 27 H -0.294 1.294 28 H -0.275 1.275 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.404 0.596 39 H 0.099 0.901 40 H 0.133 0.867 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.037 0.963 45 H 0.377 0.623 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.322 -3.628 -23.868 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.125 4.125 3 H 0.095 0.905 4 C -0.013 4.013 5 N -0.343 5.343 6 C 0.309 3.691 7 O -0.481 6.481 8 C -0.110 4.110 9 H 0.152 0.848 10 C -0.170 4.170 11 C -0.009 4.009 12 N -0.367 5.367 13 C 0.299 3.701 14 O -0.493 6.493 15 C -0.166 4.166 16 C -0.133 4.133 17 C -0.037 4.037 18 C 0.060 3.940 19 H 0.079 0.921 20 N -0.359 5.359 21 C -0.378 4.378 22 H 0.090 0.910 23 C -0.260 4.260 24 N -0.614 5.614 25 Si 0.796 3.204 26 H -0.211 1.211 27 H -0.221 1.221 28 H -0.201 1.201 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.240 0.760 39 H 0.117 0.883 40 H 0.151 0.849 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.210 0.790 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.611 -4.500 -23.640 24.710 hybrid contribution 1.217 0.178 1.617 2.031 sum -4.394 -4.323 -22.024 22.870 Atomic orbital electron populations 1.21630 0.92146 1.02642 1.02155 1.22420 0.97762 0.99149 0.93178 0.90496 1.22418 0.86902 0.95277 0.96704 1.48662 1.30797 1.44300 1.10585 1.21275 0.81883 0.77070 0.88905 1.90692 1.28215 1.54149 1.75037 1.21063 1.04706 0.96338 0.88867 0.84804 1.21815 1.00294 0.99302 0.95638 1.22060 0.96451 0.92445 0.89929 1.46056 1.43543 1.06297 1.40757 1.21079 0.83178 0.82637 0.83221 1.90733 1.50220 1.52678 1.55713 1.21952 0.99249 1.04332 0.91044 1.20990 1.00894 0.94844 0.96524 1.22958 1.00933 0.98540 0.81277 1.21554 0.91877 0.93629 0.86926 0.92067 1.42380 1.86982 1.05542 1.01015 1.19528 1.41196 0.92239 0.84832 0.91019 1.25470 1.03298 0.95848 1.01377 1.69777 1.58364 1.03315 1.29909 0.85320 0.78109 0.76894 0.80085 1.21088 1.22056 1.20094 0.94442 0.89622 0.91600 0.87670 0.88035 0.88301 0.93050 0.85664 0.87077 0.76031 0.88292 0.84909 0.93821 0.90529 0.94082 0.94391 0.78989 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.17 71.98 0.66 -1.96 16 2 C -0.11 -2.57 3.18 -9.61 -0.03 -2.60 16 3 H 0.08 2.03 8.00 -2.39 -0.02 2.01 16 4 C 0.11 1.82 5.82 86.73 0.50 2.33 16 5 N -0.61 -16.24 3.33 -811.67 -2.70 -18.94 16 6 C 0.52 14.13 6.69 87.66 0.59 14.72 16 7 O -0.60 -23.33 16.63 -3.02 -0.05 -23.38 16 8 C -0.09 -1.32 1.65 -12.34 -0.02 -1.35 16 9 H 0.13 0.90 6.63 -2.39 -0.02 0.88 16 10 C -0.13 -1.44 4.97 30.20 0.15 -1.29 16 11 C 0.11 0.46 6.47 86.26 0.56 1.02 16 12 N -0.72 -8.18 5.27 -462.52 -2.44 -10.62 16 13 C 0.51 9.62 7.06 88.11 0.62 10.24 16 14 O -0.61 -18.10 17.92 -3.05 -0.05 -18.15 16 15 C -0.13 -1.63 5.57 30.10 0.17 -1.46 16 16 C -0.09 -1.68 4.45 30.22 0.13 -1.55 16 17 C 0.09 3.30 6.59 86.85 0.57 3.87 16 18 C 0.17 6.12 3.14 46.38 0.15 6.27 16 19 H 0.06 2.25 8.02 -2.38 -0.02 2.23 16 20 N -0.72 -34.11 5.26 -316.37 -1.66 -35.77 16 21 C -0.25 -13.25 9.97 84.03 0.84 -12.42 16 22 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 24 N -0.96 -57.17 13.06 21.65 0.28 -56.89 16 25 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 26 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 27 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.18 8.07 -2.38 -0.02 1.16 16 32 H 0.11 1.07 7.24 -2.39 -0.02 1.06 16 33 H 0.10 1.06 7.77 -2.39 -0.02 1.04 16 34 H 0.10 0.84 7.72 -2.39 -0.02 0.82 16 35 H 0.05 0.89 8.05 -2.38 -0.02 0.87 16 36 H 0.13 -0.16 8.14 -2.39 -0.02 -0.17 16 37 H 0.11 -0.10 6.71 -2.39 -0.02 -0.12 16 38 H 0.40 4.21 8.91 -92.71 -0.83 3.38 16 39 H 0.10 1.37 8.13 -2.39 -0.02 1.35 16 40 H 0.13 0.61 6.78 -2.39 -0.02 0.59 16 41 H 0.04 1.09 7.75 -2.39 -0.02 1.07 16 42 H 0.08 1.45 8.10 -2.39 -0.02 1.44 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.04 1.60 8.09 -2.39 -0.02 1.58 16 45 H 0.38 19.07 7.73 -92.71 -0.72 18.35 16 46 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -82.36 364.97 0.21 -82.15 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -0.55 Total: 21.50 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.35 Total: 12.53 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -6.52 Total: -122.22 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.10 Total: -41.54 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -82.36 0.21 -82.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082665024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.300 kcal (2) G-P(sol) polarization free energy of solvation -82.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds