Wall clock time and date at job start Fri Apr 10 2020 18:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.63438 * 2 1 4 4 C 1.54325 * 110.87470 * 236.75438 * 2 1 3 5 5 N 1.47280 * 107.30596 * 219.38516 * 4 2 1 6 6 C 1.34776 * 125.79606 * 178.92772 * 5 4 2 7 7 O 1.21290 * 119.99538 * 355.51640 * 6 5 4 8 8 C 1.50700 * 120.00475 * 175.52157 * 6 5 4 9 9 C 1.52997 * 109.60221 * 309.77017 * 8 6 5 10 10 C 1.53343 * 109.60206 * 70.25750 * 8 6 5 11 11 C 1.53085 * 108.41243 * 52.21419 * 10 8 6 12 12 C 1.50181 * 109.88631 * 48.91441 * 11 10 8 13 13 O 1.21280 * 118.24286 * 162.40201 * 12 11 10 14 14 N 1.33344 * 123.50974 * 342.41373 * 12 11 10 15 15 C 1.45760 * 124.10856 * 2.20584 * 14 12 11 16 16 C 1.47427 * 108.55812 * 358.92071 * 5 4 2 17 17 C 1.54907 * 104.93007 * 24.15815 * 16 5 4 18 18 H 1.09003 * 111.00040 * 81.00913 * 17 16 5 19 19 N 1.46499 * 111.00455 * 204.82195 * 17 16 5 20 20 C 1.36930 * 120.00177 * 273.54777 * 19 17 16 21 21 H 1.08002 * 120.00031 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00345 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99724 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00124 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47341 * 89.99702 * 24 22 20 26 26 H 1.48501 * 109.46561 * 209.99243 * 24 22 20 27 27 H 1.48494 * 109.47168 * 329.99011 * 24 22 20 28 28 H 1.08994 * 109.47306 * 296.85554 * 1 2 3 29 29 H 1.09001 * 109.47226 * 56.86274 * 1 2 3 30 30 H 1.09005 * 109.46885 * 176.86063 * 1 2 3 31 31 H 1.09009 * 109.87935 * 338.78793 * 4 2 1 32 32 H 1.08997 * 109.88202 * 99.79301 * 4 2 1 33 33 H 1.08999 * 109.47030 * 68.12081 * 9 8 6 34 34 H 1.08991 * 109.47220 * 188.12781 * 9 8 6 35 35 H 1.09001 * 109.47317 * 308.12949 * 9 8 6 36 36 H 1.09000 * 109.67113 * 171.95520 * 10 8 6 37 37 H 1.08992 * 109.67757 * 292.49478 * 10 8 6 38 38 H 1.08999 * 109.40302 * 288.78651 * 11 10 8 39 39 H 1.08998 * 109.33476 * 168.99462 * 11 10 8 40 40 H 0.96999 * 117.95010 * 182.22799 * 14 12 11 41 41 H 1.08997 * 109.29787 * 220.63366 * 15 14 12 42 42 H 1.08996 * 109.13153 * 101.15113 * 15 14 12 43 43 H 1.09007 * 110.36501 * 265.26412 * 16 5 4 44 44 H 1.09003 * 110.36658 * 143.05714 * 16 5 4 45 45 H 0.97003 * 119.99943 * 93.54845 * 19 17 16 46 46 H 0.96996 * 119.99930 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9141 1.0201 0.0000 4 6 2.0799 -0.7905 -1.2059 5 7 3.2515 -1.5488 -0.7353 6 6 4.0035 -2.3816 -1.4820 7 8 3.6872 -2.6207 -2.6283 8 6 5.2371 -3.0156 -0.8928 9 6 6.1063 -1.9385 -0.2407 10 6 4.8292 -4.0571 0.1562 11 6 3.8158 -5.0123 -0.4794 12 6 4.3285 -5.4915 -1.8071 13 8 3.8258 -6.4826 -2.2927 14 7 5.3071 -4.8857 -2.4805 15 6 6.0305 -3.7167 -1.9961 16 6 3.4652 -1.2446 0.6913 17 6 2.0789 -0.7933 1.2151 18 1 1.4469 -1.6529 1.4383 19 7 2.2174 0.0720 2.3891 20 6 2.3124 -0.4795 3.6388 21 1 2.2848 -1.5524 3.7591 22 6 2.4431 0.3404 4.7513 23 7 2.4762 1.6481 4.6047 24 14 2.5734 -0.4120 6.4561 25 1 4.0014 -0.6601 6.7799 26 1 1.9944 0.5220 7.4548 27 1 1.8281 -1.6960 6.4887 28 1 -0.3633 0.4642 0.9168 29 1 -0.3634 0.5618 -0.8605 30 1 -0.3633 -1.0262 -0.0563 31 1 1.3191 -1.4773 -1.5771 32 1 2.3749 -0.1016 -1.9974 33 1 5.5972 -1.5440 0.6386 34 1 7.0609 -2.3726 0.0562 35 1 6.2798 -1.1315 -0.9526 36 1 5.7076 -4.6156 0.4796 37 1 4.3756 -3.5576 1.0122 38 1 2.8688 -4.4922 -0.6232 39 1 3.6630 -5.8670 0.1796 40 1 5.5528 -5.2454 -3.3472 41 1 6.1890 -3.0234 -2.8221 42 1 6.9958 -4.0325 -1.6006 43 1 4.1929 -0.4408 0.8029 44 1 3.8002 -2.1352 1.2231 45 1 2.2418 1.0357 2.2811 46 1 2.5679 2.2210 5.3820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082697178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:27 Heat of formation + Delta-G solvation = -57.601279 kcal Electronic energy + Delta-G solvation = -27496.882859 eV Core-core repulsion = 23807.528201 eV Total energy + Delta-G solvation = -3689.354659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.27719 -39.40240 -37.82210 -36.35941 -34.32264 -33.69721 -32.29445 -31.44832 -30.77447 -27.70714 -26.70379 -26.20929 -24.45626 -24.24905 -22.98718 -21.33825 -20.50599 -19.90182 -18.25477 -17.28973 -17.23577 -16.55764 -16.10770 -16.02186 -15.50856 -15.48321 -14.60262 -14.22520 -14.00398 -13.84372 -13.70636 -13.40310 -13.30566 -13.13990 -13.05597 -12.75357 -12.65329 -12.34602 -12.23307 -11.95939 -11.69175 -11.44010 -11.32117 -11.14727 -11.04467 -10.95771 -10.70690 -10.63305 -10.31820 -10.01302 -9.86348 -9.73143 -9.64427 -9.10076 -9.06246 -8.41943 -7.17064 -5.93334 -3.24500 2.65555 2.70151 3.05742 3.28161 3.33254 3.39932 3.41150 4.17920 4.30190 4.44444 4.48050 4.56551 4.72656 4.97161 5.02136 5.09562 5.15081 5.17729 5.29345 5.36759 5.42633 5.49058 5.54481 5.57339 5.60333 5.71490 5.72703 5.78015 5.80382 5.89920 5.95578 6.01408 6.15348 6.18154 6.31563 6.39118 6.43347 6.54541 6.73679 6.78020 7.30289 7.54985 7.68848 8.21593 8.22504 8.25361 9.36300 9.89321 10.24195 11.28417 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.004255 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.298242 B = 6579.536155 C = 7309.450986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 H 0.084 0.916 4 C 0.117 3.883 5 N -0.608 5.608 6 C 0.534 3.466 7 O -0.544 6.544 8 C -0.093 4.093 9 C -0.153 4.153 10 C -0.119 4.119 11 C -0.139 4.139 12 C 0.528 3.472 13 O -0.566 6.566 14 N -0.707 5.707 15 C 0.137 3.863 16 C 0.063 3.937 17 C 0.176 3.824 18 H 0.065 0.935 19 N -0.710 5.710 20 C -0.250 4.250 21 H 0.072 0.928 22 C -0.005 4.005 23 N -0.928 5.928 24 Si 0.906 3.094 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.399 0.601 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.547 -6.133 -10.300 13.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.006 4.006 5 N -0.341 5.341 6 C 0.322 3.678 7 O -0.422 6.422 8 C -0.096 4.096 9 C -0.210 4.210 10 C -0.156 4.156 11 C -0.179 4.179 12 C 0.316 3.684 13 O -0.446 6.446 14 N -0.358 5.358 15 C 0.012 3.988 16 C -0.062 4.062 17 C 0.063 3.937 18 H 0.083 0.917 19 N -0.350 5.350 20 C -0.381 4.381 21 H 0.090 0.910 22 C -0.202 4.202 23 N -0.575 5.575 24 Si 0.737 3.263 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.234 0.766 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.222 0.778 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.082 -6.797 -10.789 14.128 hybrid contribution 0.325 0.097 0.648 0.731 sum 6.407 -6.699 -10.141 13.740 Atomic orbital electron populations 1.21669 0.93899 1.01604 1.02071 1.22471 0.96493 0.99784 0.94517 0.89750 1.22018 0.87461 0.94322 0.96822 1.48507 1.29482 1.43777 1.12371 1.19962 0.83924 0.78455 0.85481 1.90711 1.71744 1.61737 1.18019 1.21099 0.94673 0.96981 0.96866 1.22077 0.99608 0.97209 1.02135 1.21928 1.00019 0.95838 0.97851 1.21681 1.00506 1.01482 0.94236 1.19995 0.78675 0.82656 0.87099 1.90728 1.57403 1.26843 1.69579 1.45191 1.37155 1.30686 1.22722 1.21220 0.93648 0.87114 0.96805 1.23863 1.02658 1.00948 0.78715 1.21385 0.91767 0.93795 0.86718 0.91720 1.42289 1.86918 1.05124 1.00647 1.19208 1.43407 0.91861 0.83588 0.90994 1.24751 1.02205 0.95307 0.97971 1.69653 1.56319 1.02073 1.29480 0.86218 0.77709 0.78077 0.84319 1.21569 1.21710 1.20630 0.91293 0.93189 0.92877 0.91670 0.92026 0.89431 0.91129 0.91799 0.89730 0.88660 0.88313 0.87688 0.76612 0.90022 0.90800 0.90753 0.90537 0.77828 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.17 37.16 0.34 -1.48 16 2 C -0.11 -1.63 3.16 -88.79 -0.28 -1.92 16 3 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 4 C 0.12 1.63 6.49 -2.92 -0.02 1.61 16 5 N -0.61 -8.57 3.31 -170.30 -0.56 -9.13 16 6 C 0.53 7.56 4.96 -10.99 -0.05 7.51 16 7 O -0.54 -9.36 15.44 5.55 0.09 -9.27 16 8 C -0.09 -1.00 0.50 -155.53 -0.08 -1.08 16 9 C -0.15 -1.43 7.99 37.16 0.30 -1.14 16 10 C -0.12 -1.22 4.78 -26.51 -0.13 -1.35 16 11 C -0.14 -1.72 5.50 -28.09 -0.15 -1.87 16 12 C 0.53 7.67 7.12 -11.87 -0.08 7.58 16 13 O -0.57 -10.37 17.78 5.56 0.10 -10.27 16 14 N -0.71 -8.37 4.86 -61.39 -0.30 -8.67 16 15 C 0.14 1.32 5.41 -4.48 -0.02 1.29 16 16 C 0.06 0.93 4.58 -2.53 -0.01 0.92 16 17 C 0.18 2.98 3.13 -65.79 -0.21 2.77 16 18 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 19 N -0.71 -15.37 5.28 -51.35 -0.27 -15.64 16 20 C -0.25 -6.14 9.98 -15.06 -0.15 -6.29 16 21 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 22 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 23 N -0.93 -25.77 13.06 55.49 0.72 -25.05 16 24 Si 0.91 20.66 29.55 -169.99 -5.02 15.64 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.06 0.92 7.78 -51.92 -0.40 0.52 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.94 4.59 -51.93 -0.24 0.70 16 34 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 35 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 36 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 37 H 0.10 1.01 5.20 -51.93 -0.27 0.74 16 38 H 0.10 1.36 7.43 -51.93 -0.39 0.97 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.40 4.32 8.80 -40.82 -0.36 3.96 16 41 H 0.08 0.78 7.97 -51.93 -0.41 0.36 16 42 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 43 H 0.07 1.15 7.07 -51.93 -0.37 0.78 16 44 H 0.08 1.07 4.47 -51.93 -0.23 0.84 16 45 H 0.39 9.07 7.71 -40.82 -0.31 8.75 16 46 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -31.40 355.09 -7.70 -39.10 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -7.15 Total: 11.61 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.65 Total: 6.33 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.41 Total: -58.49 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.18 Total: -19.54 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.40 -7.70 -39.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082697178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.498 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds