Wall clock time and date at job start Fri Apr 10 2020 18:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.63438 * 2 1 4 4 C 1.54325 * 110.87470 * 236.75438 * 2 1 3 5 5 N 1.47280 * 107.30596 * 219.38516 * 4 2 1 6 6 C 1.34776 * 125.79606 * 178.92772 * 5 4 2 7 7 O 1.21290 * 119.99538 * 355.51640 * 6 5 4 8 8 C 1.50700 * 120.00475 * 175.52157 * 6 5 4 9 9 C 1.52997 * 109.60221 * 309.77017 * 8 6 5 10 10 C 1.53343 * 109.60206 * 70.25750 * 8 6 5 11 11 C 1.53085 * 108.41243 * 52.21419 * 10 8 6 12 12 C 1.50181 * 109.88631 * 48.91441 * 11 10 8 13 13 O 1.21280 * 118.24286 * 162.40201 * 12 11 10 14 14 N 1.33344 * 123.50974 * 342.41373 * 12 11 10 15 15 C 1.45760 * 124.10856 * 2.20584 * 14 12 11 16 16 C 1.47427 * 108.55812 * 358.92071 * 5 4 2 17 17 C 1.54907 * 104.93007 * 24.15815 * 16 5 4 18 18 H 1.09003 * 111.00040 * 81.00913 * 17 16 5 19 19 N 1.46499 * 111.00455 * 204.82195 * 17 16 5 20 20 C 1.36930 * 120.00177 * 273.54777 * 19 17 16 21 21 H 1.08002 * 120.00031 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00345 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99724 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00124 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47341 * 89.99702 * 24 22 20 26 26 H 1.48501 * 109.46561 * 209.99243 * 24 22 20 27 27 H 1.48494 * 109.47168 * 329.99011 * 24 22 20 28 28 H 1.08994 * 109.47306 * 296.85554 * 1 2 3 29 29 H 1.09001 * 109.47226 * 56.86274 * 1 2 3 30 30 H 1.09005 * 109.46885 * 176.86063 * 1 2 3 31 31 H 1.09009 * 109.87935 * 338.78793 * 4 2 1 32 32 H 1.08997 * 109.88202 * 99.79301 * 4 2 1 33 33 H 1.08999 * 109.47030 * 68.12081 * 9 8 6 34 34 H 1.08991 * 109.47220 * 188.12781 * 9 8 6 35 35 H 1.09001 * 109.47317 * 308.12949 * 9 8 6 36 36 H 1.09000 * 109.67113 * 171.95520 * 10 8 6 37 37 H 1.08992 * 109.67757 * 292.49478 * 10 8 6 38 38 H 1.08999 * 109.40302 * 288.78651 * 11 10 8 39 39 H 1.08998 * 109.33476 * 168.99462 * 11 10 8 40 40 H 0.96999 * 117.95010 * 182.22799 * 14 12 11 41 41 H 1.08997 * 109.29787 * 220.63366 * 15 14 12 42 42 H 1.08996 * 109.13153 * 101.15113 * 15 14 12 43 43 H 1.09007 * 110.36501 * 265.26412 * 16 5 4 44 44 H 1.09003 * 110.36658 * 143.05714 * 16 5 4 45 45 H 0.97003 * 119.99943 * 93.54845 * 19 17 16 46 46 H 0.96996 * 119.99930 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9141 1.0201 0.0000 4 6 2.0799 -0.7905 -1.2059 5 7 3.2515 -1.5488 -0.7353 6 6 4.0035 -2.3816 -1.4820 7 8 3.6872 -2.6207 -2.6283 8 6 5.2371 -3.0156 -0.8928 9 6 6.1063 -1.9385 -0.2407 10 6 4.8292 -4.0571 0.1562 11 6 3.8158 -5.0123 -0.4794 12 6 4.3285 -5.4915 -1.8071 13 8 3.8258 -6.4826 -2.2927 14 7 5.3071 -4.8857 -2.4805 15 6 6.0305 -3.7167 -1.9961 16 6 3.4652 -1.2446 0.6913 17 6 2.0789 -0.7933 1.2151 18 1 1.4469 -1.6529 1.4383 19 7 2.2174 0.0720 2.3891 20 6 2.3124 -0.4795 3.6388 21 1 2.2848 -1.5524 3.7591 22 6 2.4431 0.3404 4.7513 23 7 2.4762 1.6481 4.6047 24 14 2.5734 -0.4120 6.4561 25 1 4.0014 -0.6601 6.7799 26 1 1.9944 0.5220 7.4548 27 1 1.8281 -1.6960 6.4887 28 1 -0.3633 0.4642 0.9168 29 1 -0.3634 0.5618 -0.8605 30 1 -0.3633 -1.0262 -0.0563 31 1 1.3191 -1.4773 -1.5771 32 1 2.3749 -0.1016 -1.9974 33 1 5.5972 -1.5440 0.6386 34 1 7.0609 -2.3726 0.0562 35 1 6.2798 -1.1315 -0.9526 36 1 5.7076 -4.6156 0.4796 37 1 4.3756 -3.5576 1.0122 38 1 2.8688 -4.4922 -0.6232 39 1 3.6630 -5.8670 0.1796 40 1 5.5528 -5.2454 -3.3472 41 1 6.1890 -3.0234 -2.8221 42 1 6.9958 -4.0325 -1.6006 43 1 4.1929 -0.4408 0.8029 44 1 3.8002 -2.1352 1.2231 45 1 2.2418 1.0357 2.2811 46 1 2.5679 2.2210 5.3820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082697178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:26 Heat of formation + Delta-G solvation = -80.053161 kcal Electronic energy + Delta-G solvation = -27497.856446 eV Core-core repulsion = 23807.528201 eV Total energy + Delta-G solvation = -3690.328246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.31297 -40.57151 -39.06762 -37.45367 -35.87384 -34.85429 -33.53158 -32.54342 -32.26206 -29.15844 -27.74975 -27.13657 -25.91230 -25.32521 -24.19682 -22.54675 -21.65597 -21.16692 -19.33502 -19.05224 -18.27152 -17.65720 -17.36757 -17.08592 -16.66800 -16.56343 -16.16065 -15.39725 -15.33932 -15.03174 -14.81555 -14.59474 -14.49339 -14.45253 -14.26644 -13.84209 -13.58334 -13.39813 -13.25364 -13.07380 -12.98885 -12.80472 -12.76700 -12.40738 -12.29076 -12.14426 -11.98826 -11.96135 -11.75874 -11.65423 -11.35009 -10.95824 -10.82671 -10.70161 -10.05511 -9.63763 -8.98189 -7.89614 -5.18613 1.53854 1.55053 1.55901 1.60207 1.62623 1.95015 2.34959 2.61018 3.22946 3.40940 3.42839 3.54935 3.62140 3.69759 3.81048 3.94593 3.96788 4.18823 4.26226 4.33152 4.35715 4.47025 4.52369 4.58098 4.65559 4.68605 4.71325 4.75824 4.83531 4.89274 4.92447 4.98329 5.03391 5.13906 5.19828 5.24551 5.33031 5.36621 5.47085 5.61024 5.80394 6.30872 6.31062 6.53557 7.10230 7.17558 7.39810 8.10839 8.35167 9.33185 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.004255 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.298242 B = 6579.536155 C = 7309.450986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 H 0.081 0.919 4 C 0.119 3.881 5 N -0.608 5.608 6 C 0.530 3.470 7 O -0.577 6.577 8 C -0.090 4.090 9 C -0.148 4.148 10 C -0.113 4.113 11 C -0.137 4.137 12 C 0.521 3.479 13 O -0.615 6.615 14 N -0.700 5.700 15 C 0.134 3.866 16 C 0.080 3.920 17 C 0.168 3.832 18 H 0.059 0.941 19 N -0.719 5.719 20 C -0.237 4.237 21 H 0.080 0.920 22 C -0.065 4.065 23 N -0.966 5.966 24 Si 0.963 3.037 25 H -0.286 1.286 26 H -0.303 1.303 27 H -0.271 1.271 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.403 0.597 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.377 0.623 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.162 -7.055 -10.379 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.123 4.123 3 H 0.099 0.901 4 C -0.004 4.004 5 N -0.340 5.340 6 C 0.320 3.680 7 O -0.457 6.457 8 C -0.093 4.093 9 C -0.205 4.205 10 C -0.150 4.150 11 C -0.177 4.177 12 C 0.309 3.691 13 O -0.499 6.499 14 N -0.348 5.348 15 C 0.010 3.990 16 C -0.045 4.045 17 C 0.057 3.943 18 H 0.077 0.923 19 N -0.358 5.358 20 C -0.368 4.368 21 H 0.098 0.902 22 C -0.258 4.258 23 N -0.616 5.616 24 Si 0.793 3.207 25 H -0.213 1.213 26 H -0.231 1.231 27 H -0.196 1.196 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.134 0.866 40 H 0.238 0.762 41 H 0.103 0.897 42 H 0.132 0.868 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.209 0.791 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.726 -7.732 -10.899 15.435 hybrid contribution -0.205 0.374 0.541 0.689 sum 7.520 -7.358 -10.357 14.763 Atomic orbital electron populations 1.21626 0.93087 1.02068 1.02008 1.22376 0.97156 0.99266 0.93473 0.90099 1.21985 0.87575 0.94321 0.96542 1.48527 1.29566 1.43859 1.12063 1.20650 0.84558 0.77760 0.85040 1.90699 1.72749 1.62726 1.19526 1.21173 0.93317 0.97413 0.97405 1.22051 1.00459 0.96749 1.01255 1.21951 1.00530 0.95315 0.97175 1.21665 1.00165 1.02249 0.93639 1.20371 0.78758 0.82199 0.87755 1.90700 1.59190 1.29096 1.70866 1.45242 1.36265 1.30715 1.22601 1.21495 0.94530 0.86263 0.96732 1.23527 1.00607 1.01296 0.79027 1.21532 0.93205 0.93321 0.86198 0.92330 1.42367 1.87111 1.05054 1.01249 1.19569 1.40465 0.92184 0.84604 0.90184 1.25410 1.03649 0.95658 1.01084 1.69794 1.58942 1.03224 1.29654 0.85299 0.77587 0.77305 0.80506 1.21274 1.23055 1.19600 0.93210 0.91103 0.92415 0.91801 0.91441 0.90802 0.88073 0.91910 0.86772 0.88818 0.90214 0.86573 0.76187 0.89708 0.86827 0.91113 0.89354 0.79066 0.94146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.17 71.98 0.66 -2.75 16 2 C -0.10 -2.91 3.16 -9.61 -0.03 -2.94 16 3 H 0.08 2.37 8.00 -2.39 -0.02 2.35 16 4 C 0.12 3.18 6.49 86.68 0.56 3.75 16 5 N -0.61 -16.26 3.31 -811.11 -2.68 -18.95 16 6 C 0.53 14.13 4.96 87.66 0.43 14.57 16 7 O -0.58 -19.24 15.44 -3.06 -0.05 -19.29 16 8 C -0.09 -1.67 0.50 -52.84 -0.03 -1.69 16 9 C -0.15 -2.25 7.99 71.98 0.58 -1.67 16 10 C -0.11 -1.96 4.78 30.74 0.15 -1.81 16 11 C -0.14 -3.18 5.50 29.71 0.16 -3.02 16 12 C 0.52 14.57 7.12 87.72 0.62 15.20 16 13 O -0.61 -22.60 17.78 -3.03 -0.05 -22.65 16 14 N -0.70 -15.20 4.86 -467.32 -2.27 -17.47 16 15 C 0.13 2.11 5.41 86.49 0.47 2.58 16 16 C 0.08 2.24 4.58 86.85 0.40 2.64 16 17 C 0.17 5.56 3.13 46.38 0.15 5.71 16 18 H 0.06 2.03 8.04 -2.39 -0.02 2.01 16 19 N -0.72 -30.94 5.28 -316.39 -1.67 -32.61 16 20 C -0.24 -11.46 9.98 84.03 0.84 -10.62 16 21 H 0.08 3.69 7.83 -2.91 -0.02 3.66 16 22 C -0.07 -3.38 5.50 84.86 0.47 -2.92 16 23 N -0.97 -54.35 13.06 21.65 0.28 -54.07 16 24 Si 0.96 42.29 29.55 68.60 2.03 44.31 16 25 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.44 8.07 -2.38 -0.02 1.42 16 31 H 0.06 1.75 7.78 -2.38 -0.02 1.73 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.36 4.59 -2.39 -0.01 1.35 16 34 H 0.10 0.96 8.06 -2.39 -0.02 0.94 16 35 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 36 H 0.11 1.38 8.13 -2.39 -0.02 1.37 16 37 H 0.09 1.70 5.20 -2.39 -0.01 1.69 16 38 H 0.08 2.16 7.43 -2.39 -0.02 2.14 16 39 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.40 8.13 8.80 -92.71 -0.82 7.32 16 41 H 0.08 1.35 7.97 -2.39 -0.02 1.33 16 42 H 0.11 1.00 8.05 -2.39 -0.02 0.98 16 43 H 0.07 2.08 7.07 -2.38 -0.02 2.06 16 44 H 0.09 2.27 4.47 -2.39 -0.01 2.26 16 45 H 0.38 17.80 7.71 -92.71 -0.72 17.09 16 46 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -68.64 355.09 0.49 -68.15 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -0.52 Total: 35.56 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 5.43 Total: 17.01 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -6.34 Total: -123.09 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.10 Total: -41.94 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -68.64 0.49 -68.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082697178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.905 kcal (2) G-P(sol) polarization free energy of solvation -68.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds