Wall clock time and date at job start Fri Apr 10 2020 18:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.88794 * 2 1 4 4 C 1.54903 * 111.00501 * 236.11546 * 2 1 3 5 5 N 1.47426 * 104.83432 * 204.91851 * 4 2 1 6 6 C 1.34776 * 125.64739 * 204.09363 * 5 4 2 7 7 O 1.21284 * 120.00480 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99599 * 179.97438 * 6 5 4 9 9 H 1.09000 * 115.55197 * 57.42048 * 8 6 5 10 10 C 1.53005 * 117.49441 * 203.12396 * 8 6 5 11 11 C 1.52993 * 117.49863 * 271.74394 * 8 6 5 12 12 H 1.09005 * 117.50005 * 145.02190 * 11 8 6 13 13 C 1.50701 * 117.50023 * 0.02988 * 11 8 6 14 14 O 1.21285 * 119.99836 * 300.13453 * 13 11 8 15 15 N 1.34778 * 119.99916 * 120.13386 * 13 11 8 16 16 C 1.46505 * 119.99878 * 180.02562 * 15 13 11 17 17 C 1.46493 * 120.00260 * 359.97438 * 15 13 11 18 18 C 1.47024 * 108.70445 * 24.35480 * 5 4 2 19 19 C 1.54338 * 107.26122 * 358.58932 * 18 5 4 20 20 H 1.09002 * 110.66986 * 96.52431 * 19 18 5 21 21 N 1.46502 * 110.84661 * 219.67249 * 19 18 5 22 22 C 1.36938 * 119.99872 * 268.69328 * 21 19 18 23 23 H 1.08001 * 120.00251 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00021 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99583 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99907 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47286 * 60.00336 * 26 24 22 28 28 H 1.48499 * 109.46943 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47274 * 300.00029 * 26 24 22 30 30 H 1.08997 * 109.47794 * 182.43041 * 1 2 3 31 31 H 1.09008 * 109.47459 * 302.43378 * 1 2 3 32 32 H 1.08998 * 109.47499 * 62.42746 * 1 2 3 33 33 H 1.09000 * 110.37038 * 86.07848 * 4 2 1 34 34 H 1.09004 * 110.46102 * 323.80412 * 4 2 1 35 35 H 1.08999 * 117.49174 * 214.97858 * 10 8 6 36 36 H 1.08995 * 117.50085 * 0.02562 * 10 8 6 37 37 H 1.08997 * 109.47226 * 90.00004 * 16 15 13 38 38 H 1.08993 * 109.47030 * 210.00156 * 16 15 13 39 39 H 1.09004 * 109.46616 * 329.99624 * 16 15 13 40 40 H 1.09008 * 109.47207 * 59.99908 * 17 15 13 41 41 H 1.09003 * 109.47237 * 179.97438 * 17 15 13 42 42 H 1.08998 * 109.47479 * 300.00618 * 17 15 13 43 43 H 1.08999 * 109.87947 * 118.12686 * 18 5 4 44 44 H 1.09001 * 109.88440 * 239.29899 * 18 5 4 45 45 H 0.96998 * 119.99912 * 88.69368 * 21 19 18 46 46 H 0.97006 * 119.99094 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2005 5 7 3.4270 -1.2429 -0.7737 6 6 4.4475 -1.5611 -1.5945 7 8 4.3006 -1.4999 -2.7968 8 6 5.7714 -1.9931 -1.0182 9 1 5.7365 -2.8600 -0.3584 10 6 7.0133 -1.8220 -1.8954 11 6 6.7916 -0.8998 -0.6948 12 1 7.4282 -1.0476 0.1776 13 6 6.3956 0.5267 -0.9763 14 8 6.1093 0.8651 -2.1053 15 7 6.3596 1.4265 0.0265 16 6 5.9741 2.8132 -0.2470 17 6 6.7049 1.0176 1.3902 18 6 3.4657 -1.2797 0.6956 19 6 2.0860 -0.8083 1.2020 20 1 1.4450 -1.6619 1.4225 21 7 2.2286 0.0488 2.3815 22 6 2.1999 -0.5014 3.6352 23 1 2.0718 -1.5672 3.7544 24 6 2.3344 0.3107 4.7529 25 7 2.4900 1.6096 4.6076 26 14 2.2946 -0.4397 6.4630 27 1 3.3999 -1.4221 6.5983 28 1 2.4585 0.6319 7.4778 29 1 0.9943 -1.1257 6.6724 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3634 0.5512 0.8674 32 1 -0.3634 0.4757 -0.9109 33 1 2.1559 -0.1714 -2.0837 34 1 1.4524 -1.6699 -1.4048 35 1 7.7955 -2.5765 -1.8128 36 1 6.8728 -1.3966 -2.8891 37 1 4.8949 2.9188 -0.1364 38 1 6.4781 3.4758 0.4564 39 1 6.2627 3.0764 -1.2647 40 1 7.7284 0.6430 1.4091 41 1 6.6195 1.8741 2.0590 42 1 6.0244 0.2315 1.7172 43 1 3.6599 -2.2968 1.0359 44 1 4.2423 -0.6088 1.0630 45 1 2.3432 1.0060 2.2745 46 1 2.5836 2.1772 5.3887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082744946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:31 Heat of formation + Delta-G solvation = -22.422228 kcal Electronic energy + Delta-G solvation = -27504.252857 eV Core-core repulsion = 23816.423676 eV Total energy + Delta-G solvation = -3687.829181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55360 -39.24647 -37.69481 -35.88516 -35.28059 -34.07926 -32.41914 -30.75305 -28.38189 -27.53547 -26.87811 -26.39714 -24.22319 -23.54465 -22.94359 -21.34327 -19.95691 -19.52812 -18.33705 -17.59537 -17.20479 -16.45746 -16.10820 -15.78893 -15.43198 -15.10257 -14.67636 -14.33802 -13.98005 -13.59752 -13.34020 -13.12988 -13.01009 -12.90394 -12.60003 -12.57421 -12.40744 -12.28639 -12.14125 -11.90314 -11.76694 -11.51019 -11.18308 -11.06561 -10.82022 -10.67307 -10.63044 -10.56155 -10.31973 -10.03443 -9.85428 -9.77619 -9.51786 -9.04950 -8.56821 -8.25859 -7.15142 -5.91308 -3.21805 2.39112 2.92939 3.01646 3.20926 3.33715 3.39661 3.40143 3.88522 4.41606 4.47256 4.61309 4.72204 4.80804 5.00011 5.14228 5.17376 5.21850 5.25839 5.36434 5.43396 5.52774 5.60535 5.62294 5.63741 5.69180 5.75098 5.84301 5.85925 5.92433 5.98354 6.01139 6.09719 6.19150 6.25201 6.38292 6.48625 6.53441 6.57616 6.64067 6.85447 7.40335 7.56592 7.85918 8.25763 8.26360 8.46606 9.38137 9.92010 10.27663 11.30270 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.005194 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.733960 B = 5389.849945 C = 6287.947442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.080 0.920 4 C 0.115 3.885 5 N -0.609 5.609 6 C 0.554 3.446 7 O -0.535 6.535 8 C -0.151 4.151 9 H 0.135 0.865 10 C -0.116 4.116 11 C -0.173 4.173 12 H 0.130 0.870 13 C 0.538 3.462 14 O -0.529 6.529 15 N -0.613 5.613 16 C 0.088 3.912 17 C 0.079 3.921 18 C 0.075 3.925 19 C 0.178 3.822 20 H 0.068 0.932 21 N -0.709 5.709 22 C -0.247 4.247 23 H 0.071 0.929 24 C -0.006 4.006 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.386 0.614 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.202 -3.643 -7.161 10.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 H 0.099 0.901 4 C -0.008 4.008 5 N -0.343 5.343 6 C 0.342 3.658 7 O -0.412 6.412 8 C -0.173 4.173 9 H 0.152 0.848 10 C -0.154 4.154 11 C -0.195 4.195 12 H 0.148 0.852 13 C 0.325 3.675 14 O -0.405 6.405 15 N -0.346 5.346 16 C -0.055 4.055 17 C -0.064 4.064 18 C -0.051 4.051 19 C 0.065 3.935 20 H 0.086 0.914 21 N -0.349 5.349 22 C -0.378 4.378 23 H 0.089 0.911 24 C -0.203 4.203 25 N -0.576 5.576 26 Si 0.736 3.264 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.221 0.779 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.005 -3.493 -8.243 11.368 hybrid contribution 0.137 -0.079 1.459 1.468 sum 7.142 -3.573 -6.784 10.478 Atomic orbital electron populations 1.21590 0.93878 1.01783 1.01708 1.22627 0.96283 0.99686 0.94711 0.90131 1.22230 0.82722 0.98015 0.97816 1.48393 1.11941 1.66038 1.07923 1.19089 0.83710 0.77207 0.85821 1.90674 1.82738 1.53278 1.14502 1.22197 0.89848 1.00285 1.04942 0.84770 1.23017 0.96624 0.99603 0.96158 1.22348 1.04036 0.89864 1.03204 0.85196 1.19533 0.77315 0.86127 0.84494 1.90738 1.48343 1.79719 1.21703 1.47564 1.68183 1.10213 1.08669 1.21652 1.00672 0.80972 1.02166 1.21880 1.00062 1.02455 0.81982 1.23307 1.03186 1.00894 0.77724 1.21246 0.91564 0.93779 0.86888 0.91412 1.42326 1.86346 1.06158 1.00036 1.19196 1.42884 0.92525 0.83214 0.91106 1.24726 1.02347 0.95403 0.97798 1.69652 1.55986 1.02789 1.29179 0.86305 0.77933 0.77837 0.84295 1.21213 1.21685 1.21191 0.92809 0.91457 0.93240 0.91123 0.91756 0.87058 0.86453 0.92428 0.91175 0.90948 0.92466 0.89959 0.91077 0.92456 0.91149 0.77948 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.29 37.15 0.35 -1.55 16 2 C -0.11 -1.83 3.27 -88.48 -0.29 -2.12 16 3 H 0.08 1.42 8.01 -51.93 -0.42 1.00 16 4 C 0.12 1.85 6.37 -2.53 -0.02 1.83 16 5 N -0.61 -10.28 3.33 -170.51 -0.57 -10.85 16 6 C 0.55 9.77 6.15 -10.98 -0.07 9.70 16 7 O -0.54 -11.22 16.77 5.55 0.09 -11.13 16 8 C -0.15 -2.07 5.37 -91.77 -0.49 -2.56 16 9 H 0.13 1.49 8.14 -51.93 -0.42 1.06 16 10 C -0.12 -1.43 9.55 -26.73 -0.26 -1.69 16 11 C -0.17 -2.23 5.43 -91.78 -0.50 -2.73 16 12 H 0.13 1.29 6.88 -51.93 -0.36 0.93 16 13 C 0.54 8.62 6.70 -10.98 -0.07 8.55 16 14 O -0.53 -10.47 15.29 5.55 0.08 -10.39 16 15 N -0.61 -8.72 3.27 -189.51 -0.62 -9.34 16 16 C 0.09 1.17 10.41 59.85 0.62 1.79 16 17 C 0.08 0.94 9.50 59.84 0.57 1.51 16 18 C 0.07 1.25 6.25 -3.06 -0.02 1.24 16 19 C 0.18 3.21 3.08 -66.09 -0.20 3.01 16 20 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 21 N -0.71 -15.79 5.15 -51.64 -0.27 -16.05 16 22 C -0.25 -6.15 9.96 -15.06 -0.15 -6.30 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 25 N -0.93 -25.64 13.06 55.49 0.72 -24.92 16 26 Si 0.91 20.71 29.55 -169.99 -5.02 15.68 16 27 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 29 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 30 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 31 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 34 H 0.06 0.95 8.04 -51.93 -0.42 0.54 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.12 1.77 7.42 -51.93 -0.39 1.39 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16 39 H 0.07 1.00 7.42 -51.93 -0.39 0.61 16 40 H 0.06 0.54 7.56 -51.92 -0.39 0.14 16 41 H 0.08 0.95 7.79 -51.93 -0.40 0.54 16 42 H 0.07 0.95 6.86 -51.93 -0.36 0.59 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 1.26 6.81 -51.93 -0.35 0.91 16 45 H 0.39 9.34 7.76 -40.82 -0.32 9.02 16 46 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -32.16 376.15 -8.06 -40.22 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -7.53 Total: 10.67 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -0.63 Total: 10.43 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.73 Total: -61.16 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.18 Total: -21.52 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.16 -8.06 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082744946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.799 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds