Wall clock time and date at job start Fri Apr 10 2020 18:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.88794 * 2 1 4 4 C 1.54903 * 111.00501 * 236.11546 * 2 1 3 5 5 N 1.47426 * 104.83432 * 204.91851 * 4 2 1 6 6 C 1.34776 * 125.64739 * 204.09363 * 5 4 2 7 7 O 1.21284 * 120.00480 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99599 * 179.97438 * 6 5 4 9 9 H 1.09000 * 115.55197 * 57.42048 * 8 6 5 10 10 C 1.53005 * 117.49441 * 203.12396 * 8 6 5 11 11 C 1.52993 * 117.49863 * 271.74394 * 8 6 5 12 12 H 1.09005 * 117.50005 * 145.02190 * 11 8 6 13 13 C 1.50701 * 117.50023 * 0.02988 * 11 8 6 14 14 O 1.21285 * 119.99836 * 300.13453 * 13 11 8 15 15 N 1.34778 * 119.99916 * 120.13386 * 13 11 8 16 16 C 1.46505 * 119.99878 * 180.02562 * 15 13 11 17 17 C 1.46493 * 120.00260 * 359.97438 * 15 13 11 18 18 C 1.47024 * 108.70445 * 24.35480 * 5 4 2 19 19 C 1.54338 * 107.26122 * 358.58932 * 18 5 4 20 20 H 1.09002 * 110.66986 * 96.52431 * 19 18 5 21 21 N 1.46502 * 110.84661 * 219.67249 * 19 18 5 22 22 C 1.36938 * 119.99872 * 268.69328 * 21 19 18 23 23 H 1.08001 * 120.00251 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00021 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99583 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99907 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47286 * 60.00336 * 26 24 22 28 28 H 1.48499 * 109.46943 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47274 * 300.00029 * 26 24 22 30 30 H 1.08997 * 109.47794 * 182.43041 * 1 2 3 31 31 H 1.09008 * 109.47459 * 302.43378 * 1 2 3 32 32 H 1.08998 * 109.47499 * 62.42746 * 1 2 3 33 33 H 1.09000 * 110.37038 * 86.07848 * 4 2 1 34 34 H 1.09004 * 110.46102 * 323.80412 * 4 2 1 35 35 H 1.08999 * 117.49174 * 214.97858 * 10 8 6 36 36 H 1.08995 * 117.50085 * 0.02562 * 10 8 6 37 37 H 1.08997 * 109.47226 * 90.00004 * 16 15 13 38 38 H 1.08993 * 109.47030 * 210.00156 * 16 15 13 39 39 H 1.09004 * 109.46616 * 329.99624 * 16 15 13 40 40 H 1.09008 * 109.47207 * 59.99908 * 17 15 13 41 41 H 1.09003 * 109.47237 * 179.97438 * 17 15 13 42 42 H 1.08998 * 109.47479 * 300.00618 * 17 15 13 43 43 H 1.08999 * 109.87947 * 118.12686 * 18 5 4 44 44 H 1.09001 * 109.88440 * 239.29899 * 18 5 4 45 45 H 0.96998 * 119.99912 * 88.69368 * 21 19 18 46 46 H 0.97006 * 119.99094 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2005 5 7 3.4270 -1.2429 -0.7737 6 6 4.4475 -1.5611 -1.5945 7 8 4.3006 -1.4999 -2.7968 8 6 5.7714 -1.9931 -1.0182 9 1 5.7365 -2.8600 -0.3584 10 6 7.0133 -1.8220 -1.8954 11 6 6.7916 -0.8998 -0.6948 12 1 7.4282 -1.0476 0.1776 13 6 6.3956 0.5267 -0.9763 14 8 6.1093 0.8651 -2.1053 15 7 6.3596 1.4265 0.0265 16 6 5.9741 2.8132 -0.2470 17 6 6.7049 1.0176 1.3902 18 6 3.4657 -1.2797 0.6956 19 6 2.0860 -0.8083 1.2020 20 1 1.4450 -1.6619 1.4225 21 7 2.2286 0.0488 2.3815 22 6 2.1999 -0.5014 3.6352 23 1 2.0718 -1.5672 3.7544 24 6 2.3344 0.3107 4.7529 25 7 2.4900 1.6096 4.6076 26 14 2.2946 -0.4397 6.4630 27 1 3.3999 -1.4221 6.5983 28 1 2.4585 0.6319 7.4778 29 1 0.9943 -1.1257 6.6724 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3634 0.5512 0.8674 32 1 -0.3634 0.4757 -0.9109 33 1 2.1559 -0.1714 -2.0837 34 1 1.4524 -1.6699 -1.4048 35 1 7.7955 -2.5765 -1.8128 36 1 6.8728 -1.3966 -2.8891 37 1 4.8949 2.9188 -0.1364 38 1 6.4781 3.4758 0.4564 39 1 6.2627 3.0764 -1.2647 40 1 7.7284 0.6430 1.4091 41 1 6.6195 1.8741 2.0590 42 1 6.0244 0.2315 1.7172 43 1 3.6599 -2.2968 1.0359 44 1 4.2423 -0.6088 1.0630 45 1 2.3432 1.0060 2.2745 46 1 2.5836 2.1772 5.3887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082744946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:30 Heat of formation + Delta-G solvation = -43.727426 kcal Electronic energy + Delta-G solvation = -27505.176720 eV Core-core repulsion = 23816.423676 eV Total energy + Delta-G solvation = -3688.753044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78724 -40.57009 -39.07822 -37.04681 -36.50704 -35.81510 -33.88357 -32.46873 -29.46691 -29.09786 -28.12333 -27.50436 -25.88595 -24.85024 -24.01341 -22.76168 -21.40192 -20.71654 -19.56998 -19.05020 -18.77434 -17.73758 -17.43592 -17.07279 -16.77238 -16.34163 -16.21918 -15.55681 -15.34346 -15.28164 -14.76525 -14.46159 -14.33909 -14.18885 -13.99227 -13.68993 -13.56356 -13.53155 -13.41187 -13.02563 -12.93243 -12.86671 -12.78033 -12.76474 -12.25066 -12.20272 -12.03267 -11.71137 -11.67885 -11.58601 -11.46398 -11.12410 -10.92972 -10.80350 -9.72773 -9.64693 -9.00951 -7.88146 -5.17751 1.19198 1.54732 1.56044 1.61409 1.62263 1.86595 2.01559 2.61010 2.82400 3.28293 3.42662 3.49887 3.63069 3.74209 3.79356 3.83618 3.90441 4.18495 4.19978 4.24830 4.33775 4.38500 4.42519 4.44442 4.57467 4.60251 4.64599 4.72536 4.79480 4.82168 4.82996 4.88078 4.98002 5.07804 5.08973 5.15395 5.26454 5.30201 5.44396 5.46473 5.60592 6.27984 6.30736 6.50484 7.07416 7.11480 7.39622 8.09003 8.35143 9.34021 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.005194 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.733960 B = 5389.849945 C = 6287.947442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 H 0.060 0.940 4 C 0.116 3.884 5 N -0.611 5.611 6 C 0.545 3.455 7 O -0.578 6.578 8 C -0.159 4.159 9 H 0.170 0.830 10 C -0.106 4.106 11 C -0.169 4.169 12 H 0.169 0.831 13 C 0.525 3.475 14 O -0.579 6.579 15 N -0.613 5.613 16 C 0.086 3.914 17 C 0.077 3.923 18 C 0.088 3.912 19 C 0.174 3.826 20 H 0.074 0.926 21 N -0.716 5.716 22 C -0.238 4.238 23 H 0.080 0.920 24 C -0.062 4.062 25 N -0.963 5.963 26 Si 0.963 3.037 27 H -0.275 1.275 28 H -0.302 1.302 29 H -0.284 1.284 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.157 0.843 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.374 0.626 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 -5.832 -6.047 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.123 4.123 3 H 0.078 0.922 4 C -0.007 4.007 5 N -0.343 5.343 6 C 0.334 3.666 7 O -0.458 6.458 8 C -0.180 4.180 9 H 0.187 0.813 10 C -0.143 4.143 11 C -0.190 4.190 12 H 0.187 0.813 13 C 0.314 3.686 14 O -0.459 6.459 15 N -0.345 5.345 16 C -0.057 4.057 17 C -0.064 4.064 18 C -0.037 4.037 19 C 0.064 3.936 20 H 0.092 0.908 21 N -0.354 5.354 22 C -0.370 4.370 23 H 0.098 0.902 24 C -0.255 4.255 25 N -0.613 5.613 26 Si 0.793 3.207 27 H -0.201 1.201 28 H -0.229 1.229 29 H -0.210 1.210 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.175 0.825 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.206 0.794 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.059 -5.724 -7.111 12.177 hybrid contribution -0.242 0.637 1.032 1.236 sum 7.817 -5.087 -6.079 11.133 Atomic orbital electron populations 1.21545 0.92259 1.02686 1.01856 1.22509 0.97549 0.98307 0.93943 0.92155 1.22246 0.83024 0.98422 0.97001 1.48484 1.12207 1.65664 1.07962 1.19848 0.84973 0.76343 0.85403 1.90650 1.83591 1.55140 1.16373 1.22334 0.87910 1.01560 1.06231 0.81285 1.23121 0.96985 1.00018 0.94226 1.22503 1.04030 0.87491 1.04948 0.81318 1.20203 0.76673 0.87658 0.84025 1.90715 1.50690 1.80786 1.23725 1.47754 1.67149 1.10220 1.09398 1.21682 0.99857 0.81585 1.02527 1.22022 1.01636 1.02304 0.80481 1.23045 1.01598 1.01621 0.77473 1.21389 0.92558 0.93567 0.86111 0.90813 1.42393 1.86489 1.05931 1.00631 1.19546 1.40517 0.92854 0.84076 0.90207 1.25383 1.03455 0.95749 1.00911 1.69801 1.58213 1.03956 1.29369 0.85374 0.78063 0.76836 0.80406 1.20095 1.22879 1.20998 0.91307 0.93137 0.91451 0.92593 0.89872 0.82484 0.89902 0.94260 0.88281 0.91931 0.89034 0.89689 0.92320 0.90443 0.92226 0.79403 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.29 71.98 0.67 -2.82 16 2 C -0.10 -3.30 3.27 -9.41 -0.03 -3.33 16 3 H 0.06 2.18 8.01 -2.38 -0.02 2.16 16 4 C 0.12 3.67 6.37 86.85 0.55 4.22 16 5 N -0.61 -20.05 3.33 -811.75 -2.70 -22.75 16 6 C 0.54 18.85 6.15 87.66 0.54 19.39 16 7 O -0.58 -24.62 16.77 -3.04 -0.05 -24.67 16 8 C -0.16 -3.96 5.37 -11.54 -0.06 -4.02 16 9 H 0.17 2.99 8.14 -2.39 -0.02 2.97 16 10 C -0.11 -2.36 9.55 30.60 0.29 -2.07 16 11 C -0.17 -3.92 5.43 -11.54 -0.06 -3.98 16 12 H 0.17 2.56 6.88 -2.38 -0.02 2.54 16 13 C 0.53 16.62 6.70 87.66 0.59 17.21 16 14 O -0.58 -23.70 15.29 -3.04 -0.05 -23.75 16 15 N -0.61 -17.06 3.27 -871.88 -2.85 -19.91 16 16 C 0.09 2.33 10.41 127.77 1.33 3.66 16 17 C 0.08 1.69 9.50 127.77 1.21 2.90 16 18 C 0.09 2.80 6.25 86.73 0.54 3.34 16 19 C 0.17 6.10 3.08 46.19 0.14 6.25 16 20 H 0.07 2.53 7.96 -2.39 -0.02 2.51 16 21 N -0.72 -31.56 5.15 -317.29 -1.64 -33.20 16 22 C -0.24 -11.58 9.96 84.03 0.84 -10.75 16 23 H 0.08 3.69 7.83 -2.91 -0.02 3.66 16 24 C -0.06 -3.19 5.50 84.86 0.47 -2.73 16 25 N -0.96 -53.62 13.06 21.65 0.28 -53.34 16 26 Si 0.96 41.95 29.55 68.60 2.03 43.97 16 27 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 28 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 29 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 30 H 0.07 1.70 8.11 -2.39 -0.02 1.68 16 31 H 0.05 1.57 8.14 -2.38 -0.02 1.56 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.94 8.04 -2.39 -0.02 1.92 16 34 H 0.08 2.33 8.04 -2.38 -0.02 2.31 16 35 H 0.16 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 2.50 7.42 -2.39 -0.02 2.48 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 2.05 7.92 -2.39 -0.02 2.03 16 39 H 0.06 1.80 7.42 -2.38 -0.02 1.79 16 40 H 0.09 1.38 7.56 -2.38 -0.02 1.36 16 41 H 0.08 1.81 7.79 -2.39 -0.02 1.80 16 42 H 0.06 1.45 6.86 -2.39 -0.02 1.44 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 2.06 6.81 -2.39 -0.02 2.04 16 45 H 0.37 18.33 7.76 -92.71 -0.72 17.61 16 46 H 0.25 13.71 8.31 -92.70 -0.77 12.94 16 Total: -1.00 -71.93 376.15 2.30 -69.64 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.26 Total: 36.74 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: 7.02 Total: 27.27 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -6.91 Total: -129.20 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.10 Total: -48.42 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -71.93 2.30 -69.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082744946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.912 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds