Wall clock time and date at job start Fri Apr 10 2020 18:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21285 * 120.00220 * 2 1 4 4 N 1.34780 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.47418 * 125.64694 * 359.95840 * 4 2 1 6 6 C 1.54907 * 104.83436 * 204.16219 * 5 4 2 7 7 C 1.55157 * 101.57944 * 322.99108 * 6 5 4 8 8 C 1.47022 * 125.64789 * 179.97438 * 4 2 1 9 9 H 1.08994 * 109.88292 * 59.33625 * 8 4 2 10 10 C 1.50700 * 109.88379 * 298.32210 * 8 4 2 11 11 O 1.21283 * 119.99803 * 341.45503 * 10 8 4 12 12 N 1.34777 * 119.99675 * 161.73378 * 10 8 4 13 13 C 1.47426 * 125.64505 * 179.72939 * 12 10 8 14 14 C 1.54906 * 104.83017 * 204.08865 * 13 12 10 15 15 H 1.08998 * 111.00700 * 81.06530 * 14 13 12 16 16 C 1.52996 * 111.00653 * 204.87559 * 14 13 12 17 17 C 1.55155 * 101.58181 * 322.98573 * 14 13 12 18 18 H 1.08996 * 110.72658 * 277.13937 * 17 14 13 19 19 N 1.46506 * 110.72165 * 153.86566 * 17 14 13 20 20 C 1.36935 * 120.00448 * 155.00257 * 19 17 14 21 21 H 1.08004 * 119.99343 * 359.97438 * 20 19 17 22 22 C 1.38806 * 120.00562 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99645 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00360 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47029 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47058 * 120.00135 * 24 22 20 27 27 H 1.48496 * 109.47198 * 240.00219 * 24 22 20 28 28 C 1.47021 * 125.65024 * 359.41182 * 12 10 8 29 29 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46766 * 300.00247 * 1 2 3 31 31 H 1.09004 * 109.47019 * 59.99610 * 1 2 3 32 32 H 1.09003 * 110.36932 * 323.00339 * 5 4 2 33 33 H 1.09003 * 110.36801 * 85.32419 * 5 4 2 34 34 H 1.09001 * 110.99978 * 81.06822 * 6 5 4 35 35 H 1.09003 * 111.00403 * 204.91305 * 6 5 4 36 36 H 1.08997 * 110.71883 * 277.13638 * 7 6 5 37 37 H 1.09007 * 110.71718 * 153.86238 * 7 6 5 38 38 H 1.09003 * 110.36374 * 322.92215 * 13 12 10 39 39 H 1.09000 * 110.37185 * 85.13705 * 13 12 10 40 40 H 1.09006 * 109.46831 * 58.54454 * 16 14 13 41 41 H 1.08999 * 109.47505 * 178.54304 * 16 14 13 42 42 H 1.08998 * 109.47239 * 298.54699 * 16 14 13 43 43 H 0.97004 * 119.99361 * 335.00341 * 19 17 14 44 44 H 0.96997 * 120.00120 * 179.97438 * 23 22 20 45 45 H 1.08996 * 109.88140 * 298.39855 * 28 12 10 46 46 H 1.09001 * 109.87951 * 59.56582 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5730 -2.5102 0.0020 6 6 2.6546 -3.4344 0.6150 7 6 3.9549 -2.8232 0.0293 8 6 3.6440 -1.3119 0.0001 9 1 4.0646 -0.8276 0.8812 10 6 4.2197 -0.6941 -1.2481 11 8 3.5062 -0.4864 -2.2066 12 7 5.5287 -0.3775 -1.3012 13 6 6.2211 0.2238 -2.4555 14 6 7.7069 -0.1773 -2.2796 15 1 7.8824 -1.1924 -2.6357 16 6 8.6307 0.8161 -2.9871 17 6 7.8724 -0.0918 -0.7393 18 1 8.0641 0.9351 -0.4283 19 7 8.9431 -0.9816 -0.2828 20 6 9.6011 -0.7163 0.8884 21 1 9.3310 0.1491 1.4754 22 6 10.6152 -1.5596 1.3213 23 7 10.9446 -2.6140 0.6056 24 14 11.5133 -1.1973 2.9185 25 1 10.9585 0.0374 3.5293 26 1 11.3355 -2.3355 3.8556 27 1 12.9595 -1.0059 2.6409 28 6 6.5012 -0.5686 -0.2153 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.6734 -2.5189 0.6175 33 1 1.3401 -2.8223 -1.0161 34 1 2.6496 -3.3731 1.7033 35 1 2.5226 -4.4641 0.2827 36 1 4.1380 -3.1985 -0.9775 37 1 4.8050 -3.0297 0.6796 38 1 5.8266 -0.1812 -3.3875 39 1 6.1147 1.3084 -2.4389 40 1 8.4665 1.8155 -2.5838 41 1 9.6687 0.5254 -2.8260 42 1 8.4148 0.8155 -4.0555 43 1 9.1858 -1.7586 -0.8103 44 1 11.6535 -3.2031 0.9078 45 1 6.2082 0.0217 0.6528 46 1 6.5552 -1.6239 0.0524 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082873057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:36 Heat of formation + Delta-G solvation = -52.109978 kcal Electronic energy + Delta-G solvation = -26807.990717 eV Core-core repulsion = 23118.874178 eV Total energy + Delta-G solvation = -3689.116538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71088 -39.18906 -37.65427 -36.89571 -34.07578 -32.68687 -32.02974 -30.76265 -30.21829 -28.93554 -27.51018 -26.17257 -24.16449 -23.70642 -21.93346 -21.36493 -20.19610 -19.90227 -18.42471 -17.45098 -17.18117 -17.09523 -15.93194 -15.75888 -15.49949 -14.95553 -14.58246 -14.40697 -13.85699 -13.67707 -13.50299 -13.25948 -13.13461 -13.07966 -12.82732 -12.58275 -12.53476 -12.47833 -12.15541 -12.01933 -11.68193 -11.54087 -11.37290 -11.15729 -11.10491 -11.01033 -10.73760 -10.59631 -10.23904 -9.99694 -9.91811 -9.82591 -9.68770 -9.04406 -8.69930 -8.27362 -7.11799 -5.87844 -3.18490 2.51272 2.75322 2.92684 3.36559 3.38502 3.44450 3.45545 4.21995 4.30090 4.49352 4.62374 4.68015 4.79705 4.98254 5.05890 5.07514 5.16207 5.17975 5.24348 5.24954 5.35389 5.54917 5.56216 5.59751 5.63308 5.65372 5.71172 5.79442 5.84745 5.91432 5.93453 6.01533 6.08063 6.22496 6.25904 6.40079 6.48565 6.58861 6.64325 6.86753 7.39567 7.62073 7.83942 8.11553 8.29450 8.42959 9.41915 9.95373 10.30825 11.34064 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015618 B = 0.003827 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.331177 B = 7314.579540 C = 8171.660921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.530 3.470 3 O -0.538 6.538 4 N -0.603 5.603 5 C 0.099 3.901 6 C -0.130 4.130 7 C -0.120 4.120 8 C 0.123 3.877 9 H 0.098 0.902 10 C 0.526 3.474 11 O -0.545 6.545 12 N -0.610 5.610 13 C 0.115 3.885 14 C -0.114 4.114 15 H 0.083 0.917 16 C -0.132 4.132 17 C 0.178 3.822 18 H 0.069 0.931 19 N -0.710 5.710 20 C -0.247 4.247 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.070 3.930 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.059 0.941 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.267 -1.320 -1.954 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.320 3.680 3 O -0.414 6.414 4 N -0.338 5.338 5 C -0.023 4.023 6 C -0.168 4.168 7 C -0.158 4.158 8 C 0.015 3.985 9 H 0.115 0.885 10 C 0.313 3.687 11 O -0.423 6.423 12 N -0.343 5.343 13 C -0.008 4.008 14 C -0.134 4.134 15 H 0.101 0.899 16 C -0.190 4.190 17 C 0.065 3.935 18 H 0.087 0.913 19 N -0.350 5.350 20 C -0.378 4.378 21 H 0.091 0.909 22 C -0.204 4.204 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.056 4.056 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.361 -0.509 -2.279 18.509 hybrid contribution 0.635 -0.188 0.783 1.026 sum -17.726 -0.697 -1.495 17.803 Atomic orbital electron populations 1.21854 0.91300 1.04220 1.05162 1.20463 0.90300 0.81998 0.75255 1.90743 1.70542 1.30654 1.49487 1.48336 1.05386 1.06300 1.73781 1.22400 0.96878 0.81729 1.01334 1.22797 0.93656 0.99220 1.01174 1.22602 0.99184 0.90796 1.03254 1.21456 0.82125 0.97800 0.97078 0.88458 1.20337 0.80759 0.78262 0.89333 1.90639 1.58706 1.54964 1.37948 1.48460 1.07612 1.61301 1.16965 1.22236 0.91614 0.97672 0.89253 1.22643 0.92674 1.00391 0.97655 0.89889 1.21594 1.00131 0.98356 0.98929 1.21241 0.86659 0.95150 0.90429 0.91342 1.42358 1.37604 1.29314 1.25710 1.19308 1.12481 1.07880 0.98118 0.90913 1.24748 0.99361 0.97390 0.98937 1.69670 1.32996 1.15959 1.39048 0.86135 0.79571 0.77443 0.83129 1.20452 1.21805 1.21789 1.23378 0.90919 1.01905 0.89380 0.90508 0.88844 0.88673 0.90024 0.90973 0.90014 0.89212 0.89992 0.88441 0.91159 0.91759 0.92799 0.91406 0.93241 0.77882 0.93414 0.92311 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.19 36.00 0.37 -1.12 16 2 C 0.53 7.68 7.36 -10.99 -0.08 7.60 16 3 O -0.54 -10.41 16.91 5.55 0.09 -10.31 16 4 N -0.60 -7.85 2.75 -164.33 -0.45 -8.31 16 5 C 0.10 0.85 6.39 -2.53 -0.02 0.83 16 6 C -0.13 -1.01 7.09 -24.58 -0.17 -1.19 16 7 C -0.12 -1.33 6.31 -24.90 -0.16 -1.48 16 8 C 0.12 1.76 2.65 -68.10 -0.18 1.58 16 9 H 0.10 1.44 7.58 -51.93 -0.39 1.05 16 10 C 0.53 9.33 6.29 -10.98 -0.07 9.26 16 11 O -0.55 -11.23 16.40 5.55 0.09 -11.14 16 12 N -0.61 -10.47 3.33 -170.51 -0.57 -11.03 16 13 C 0.12 1.86 6.37 -2.53 -0.02 1.85 16 14 C -0.11 -1.84 3.27 -88.48 -0.29 -2.12 16 15 H 0.08 1.39 8.01 -51.93 -0.42 0.98 16 16 C -0.13 -1.93 9.30 37.16 0.35 -1.59 16 17 C 0.18 3.33 3.07 -66.09 -0.20 3.13 16 18 H 0.07 1.32 7.97 -51.93 -0.41 0.91 16 19 N -0.71 -16.38 5.15 -51.64 -0.27 -16.64 16 20 C -0.25 -6.39 9.96 -15.06 -0.15 -6.54 16 21 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 24 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.07 1.22 6.03 -3.06 -0.02 1.20 16 29 H 0.08 0.48 6.09 -51.93 -0.32 0.16 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.47 6.94 -51.93 -0.36 0.11 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 37 H 0.10 1.05 7.89 -51.93 -0.41 0.64 16 38 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 39 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 40 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.39 9.54 7.76 -40.82 -0.32 9.23 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.06 1.01 7.96 -51.93 -0.41 0.60 16 46 H 0.07 1.31 7.62 -51.93 -0.40 0.92 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -34.17 371.22 -8.15 -42.31 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -7.60 Total: 7.91 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -0.74 Total: 11.08 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.56 Total: -61.82 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.18 Total: -21.45 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.17 -8.15 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082873057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.796 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds