Wall clock time and date at job start Fri Apr 10 2020 18:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21285 * 120.00220 * 2 1 4 4 N 1.34780 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.47418 * 125.64694 * 359.95840 * 4 2 1 6 6 C 1.54907 * 104.83436 * 204.16219 * 5 4 2 7 7 C 1.55157 * 101.57944 * 322.99108 * 6 5 4 8 8 C 1.47022 * 125.64789 * 179.97438 * 4 2 1 9 9 H 1.08994 * 109.88292 * 59.33625 * 8 4 2 10 10 C 1.50700 * 109.88379 * 298.32210 * 8 4 2 11 11 O 1.21283 * 119.99803 * 341.45503 * 10 8 4 12 12 N 1.34777 * 119.99675 * 161.73378 * 10 8 4 13 13 C 1.47426 * 125.64505 * 179.72939 * 12 10 8 14 14 C 1.54906 * 104.83017 * 204.08865 * 13 12 10 15 15 H 1.08998 * 111.00700 * 81.06530 * 14 13 12 16 16 C 1.52996 * 111.00653 * 204.87559 * 14 13 12 17 17 C 1.55155 * 101.58181 * 322.98573 * 14 13 12 18 18 H 1.08996 * 110.72658 * 277.13937 * 17 14 13 19 19 N 1.46506 * 110.72165 * 153.86566 * 17 14 13 20 20 C 1.36935 * 120.00448 * 155.00257 * 19 17 14 21 21 H 1.08004 * 119.99343 * 359.97438 * 20 19 17 22 22 C 1.38806 * 120.00562 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99645 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00360 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47029 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47058 * 120.00135 * 24 22 20 27 27 H 1.48496 * 109.47198 * 240.00219 * 24 22 20 28 28 C 1.47021 * 125.65024 * 359.41182 * 12 10 8 29 29 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46766 * 300.00247 * 1 2 3 31 31 H 1.09004 * 109.47019 * 59.99610 * 1 2 3 32 32 H 1.09003 * 110.36932 * 323.00339 * 5 4 2 33 33 H 1.09003 * 110.36801 * 85.32419 * 5 4 2 34 34 H 1.09001 * 110.99978 * 81.06822 * 6 5 4 35 35 H 1.09003 * 111.00403 * 204.91305 * 6 5 4 36 36 H 1.08997 * 110.71883 * 277.13638 * 7 6 5 37 37 H 1.09007 * 110.71718 * 153.86238 * 7 6 5 38 38 H 1.09003 * 110.36374 * 322.92215 * 13 12 10 39 39 H 1.09000 * 110.37185 * 85.13705 * 13 12 10 40 40 H 1.09006 * 109.46831 * 58.54454 * 16 14 13 41 41 H 1.08999 * 109.47505 * 178.54304 * 16 14 13 42 42 H 1.08998 * 109.47239 * 298.54699 * 16 14 13 43 43 H 0.97004 * 119.99361 * 335.00341 * 19 17 14 44 44 H 0.96997 * 120.00120 * 179.97438 * 23 22 20 45 45 H 1.08996 * 109.88140 * 298.39855 * 28 12 10 46 46 H 1.09001 * 109.87951 * 59.56582 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5730 -2.5102 0.0020 6 6 2.6546 -3.4344 0.6150 7 6 3.9549 -2.8232 0.0293 8 6 3.6440 -1.3119 0.0001 9 1 4.0646 -0.8276 0.8812 10 6 4.2197 -0.6941 -1.2481 11 8 3.5062 -0.4864 -2.2066 12 7 5.5287 -0.3775 -1.3012 13 6 6.2211 0.2238 -2.4555 14 6 7.7069 -0.1773 -2.2796 15 1 7.8824 -1.1924 -2.6357 16 6 8.6307 0.8161 -2.9871 17 6 7.8724 -0.0918 -0.7393 18 1 8.0641 0.9351 -0.4283 19 7 8.9431 -0.9816 -0.2828 20 6 9.6011 -0.7163 0.8884 21 1 9.3310 0.1491 1.4754 22 6 10.6152 -1.5596 1.3213 23 7 10.9446 -2.6140 0.6056 24 14 11.5133 -1.1973 2.9185 25 1 10.9585 0.0374 3.5293 26 1 11.3355 -2.3355 3.8556 27 1 12.9595 -1.0059 2.6409 28 6 6.5012 -0.5686 -0.2153 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.6734 -2.5189 0.6175 33 1 1.3401 -2.8223 -1.0161 34 1 2.6496 -3.3731 1.7033 35 1 2.5226 -4.4641 0.2827 36 1 4.1380 -3.1985 -0.9775 37 1 4.8050 -3.0297 0.6796 38 1 5.8266 -0.1812 -3.3875 39 1 6.1147 1.3084 -2.4389 40 1 8.4665 1.8155 -2.5838 41 1 9.6687 0.5254 -2.8260 42 1 8.4148 0.8155 -4.0555 43 1 9.1858 -1.7586 -0.8103 44 1 11.6535 -3.2031 0.9078 45 1 6.2082 0.0217 0.6528 46 1 6.5552 -1.6239 0.0524 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082873057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:35 Heat of formation + Delta-G solvation = -75.499888 kcal Electronic energy + Delta-G solvation = -26809.004979 eV Core-core repulsion = 23118.874178 eV Total energy + Delta-G solvation = -3690.130801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88093 -40.48023 -38.97980 -38.08747 -35.87750 -34.10719 -33.08873 -32.52260 -31.11881 -29.80523 -29.16478 -27.38739 -25.90522 -24.82332 -23.22123 -22.39224 -21.50861 -21.23376 -19.62661 -19.10844 -18.64055 -18.18247 -17.27688 -16.95457 -16.79380 -16.32598 -16.04955 -15.49449 -15.37307 -15.22064 -14.71523 -14.57193 -14.39573 -14.09660 -14.02773 -13.80850 -13.56444 -13.47662 -13.30845 -13.05204 -13.00523 -12.88583 -12.86175 -12.72612 -12.27268 -12.13227 -12.07426 -12.03998 -11.87578 -11.70422 -11.47858 -11.09256 -11.03266 -10.93309 -9.78876 -9.72117 -9.06041 -7.93747 -5.23580 1.36982 1.49968 1.51896 1.54033 1.60526 1.82226 2.14067 2.57291 3.24347 3.37415 3.40191 3.55142 3.74924 3.76946 3.83869 3.85928 4.00189 4.11709 4.18171 4.30326 4.40193 4.42424 4.47861 4.57688 4.58559 4.59923 4.66448 4.74394 4.80120 4.84906 4.86543 4.95548 5.03423 5.05869 5.08175 5.12968 5.24034 5.25068 5.28790 5.44798 5.55825 6.26696 6.39793 6.46790 6.99110 7.10754 7.35235 8.04463 8.30641 9.28967 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015618 B = 0.003827 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.331177 B = 7314.579540 C = 8171.660921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.514 3.486 3 O -0.601 6.601 4 N -0.605 5.605 5 C 0.092 3.908 6 C -0.118 4.118 7 C -0.118 4.118 8 C 0.118 3.882 9 H 0.087 0.913 10 C 0.519 3.481 11 O -0.578 6.578 12 N -0.612 5.612 13 C 0.116 3.884 14 C -0.100 4.100 15 H 0.077 0.923 16 C -0.127 4.127 17 C 0.173 3.827 18 H 0.066 0.934 19 N -0.717 5.717 20 C -0.242 4.242 21 H 0.077 0.923 22 C -0.064 4.064 23 N -0.964 5.964 24 Si 0.966 3.034 25 H -0.268 1.268 26 H -0.294 1.294 27 H -0.296 1.296 28 C 0.085 3.915 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.059 0.941 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.120 -1.945 -1.279 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.306 3.694 3 O -0.482 6.482 4 N -0.339 5.339 5 C -0.028 4.028 6 C -0.156 4.156 7 C -0.156 4.156 8 C 0.010 3.990 9 H 0.105 0.895 10 C 0.308 3.692 11 O -0.458 6.458 12 N -0.345 5.345 13 C -0.006 4.006 14 C -0.120 4.120 15 H 0.096 0.904 16 C -0.185 4.185 17 C 0.062 3.938 18 H 0.084 0.916 19 N -0.356 5.356 20 C -0.373 4.373 21 H 0.095 0.905 22 C -0.257 4.257 23 N -0.614 5.614 24 Si 0.796 3.204 25 H -0.192 1.192 26 H -0.221 1.221 27 H -0.224 1.224 28 C -0.041 4.041 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.260 -1.144 -1.599 20.355 hybrid contribution 1.164 0.041 0.511 1.272 sum -19.096 -1.102 -1.088 19.159 Atomic orbital electron populations 1.21894 0.86947 1.06697 1.05957 1.21566 0.92474 0.81413 0.73925 1.90700 1.72160 1.32923 1.52463 1.48604 1.04898 1.07865 1.72499 1.22749 0.98251 0.79312 1.02524 1.22846 0.90873 1.00120 1.01736 1.22614 1.01260 0.88652 1.03115 1.21531 0.83371 0.99487 0.94600 0.89544 1.21030 0.80478 0.77607 0.90108 1.90605 1.59318 1.56420 1.39462 1.48544 1.07767 1.61184 1.17048 1.22266 0.91286 0.97902 0.89187 1.22529 0.93101 1.00703 0.95705 0.90436 1.21558 0.98576 0.98021 1.00333 1.21369 0.86003 0.94100 0.92303 0.91611 1.42411 1.38548 1.29591 1.25039 1.19624 1.11851 1.07299 0.98567 0.90530 1.25437 1.00699 0.97694 1.01904 1.69804 1.33801 1.17101 1.40684 0.85185 0.77971 0.77415 0.79836 1.19244 1.22073 1.22373 1.23058 0.90142 1.01589 0.89308 0.87179 0.87229 0.88536 0.86310 0.90637 0.88783 0.86597 0.90896 0.88436 0.90894 0.91327 0.92079 0.92971 0.90857 0.78986 0.93982 0.92297 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.19 71.23 0.73 -1.70 16 2 C 0.51 14.55 7.36 87.66 0.64 15.20 16 3 O -0.60 -23.85 16.91 -3.05 -0.05 -23.90 16 4 N -0.60 -15.01 2.75 -792.20 -2.18 -17.19 16 5 C 0.09 1.28 6.39 86.86 0.55 1.84 16 6 C -0.12 -1.46 7.09 31.99 0.23 -1.23 16 7 C -0.12 -2.47 6.31 31.78 0.20 -2.27 16 8 C 0.12 3.35 2.65 44.60 0.12 3.47 16 9 H 0.09 2.61 7.58 -2.39 -0.02 2.59 16 10 C 0.52 18.62 6.29 87.66 0.55 19.17 16 11 O -0.58 -24.14 16.40 -3.04 -0.05 -24.18 16 12 N -0.61 -21.20 3.33 -811.77 -2.70 -23.90 16 13 C 0.12 3.73 6.37 86.85 0.55 4.29 16 14 C -0.10 -3.21 3.27 -9.40 -0.03 -3.25 16 15 H 0.08 2.60 8.01 -2.39 -0.02 2.58 16 16 C -0.13 -3.59 9.30 71.98 0.67 -2.92 16 17 C 0.17 6.49 3.07 46.18 0.14 6.63 16 18 H 0.07 2.52 7.97 -2.39 -0.02 2.50 16 19 N -0.72 -33.31 5.15 -317.31 -1.64 -34.94 16 20 C -0.24 -12.51 9.96 84.03 0.84 -11.67 16 21 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 22 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 23 N -0.96 -55.79 13.06 21.65 0.28 -55.51 16 24 Si 0.97 44.06 29.55 68.60 2.03 46.09 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 26 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 27 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 28 C 0.08 2.96 6.03 86.73 0.52 3.49 16 29 H 0.11 0.92 6.09 -2.39 -0.01 0.90 16 30 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.12 0.80 6.94 -2.39 -0.02 0.78 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.66 7.84 -2.39 -0.02 1.64 16 37 H 0.10 2.02 7.89 -2.38 -0.02 2.01 16 38 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 39 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 40 H 0.06 1.63 8.11 -2.38 -0.02 1.61 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.38 18.92 7.76 -92.71 -0.72 18.20 16 44 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.06 2.05 7.96 -2.39 -0.02 2.03 16 46 H 0.07 2.54 7.62 -2.39 -0.02 2.52 16 Total: -1.00 -76.11 371.22 2.13 -73.98 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.25 Total: 31.54 kcal Atomic # 6 Polarization: 21.84 SS G_CDS: 6.18 Total: 28.02 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -6.23 Total: -131.54 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -0.10 Total: -48.09 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -76.11 2.13 -73.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082873057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.522 kcal (2) G-P(sol) polarization free energy of solvation -76.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds