Wall clock time and date at job start Fri Apr 10 2020 18:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99464 * 2 1 4 4 N 1.34766 * 120.00435 * 179.97438 * 2 1 3 5 5 C 1.47019 * 125.64802 * 0.02562 * 4 2 1 6 6 C 1.54331 * 107.27257 * 178.89721 * 5 4 2 7 7 C 1.55160 * 102.93809 * 337.80756 * 6 5 4 8 8 H 1.08999 * 111.00337 * 277.38590 * 7 6 5 9 9 C 1.50703 * 111.00145 * 153.57481 * 7 6 5 10 10 O 1.21288 * 120.00113 * 0.02562 * 9 7 6 11 11 N 1.34771 * 120.00115 * 179.97438 * 9 7 6 12 12 C 1.47019 * 125.65235 * 180.02562 * 11 9 7 13 13 C 1.54315 * 107.27613 * 178.98745 * 12 11 9 14 14 H 1.08996 * 110.72511 * 96.16929 * 13 12 11 15 15 C 1.53002 * 110.87430 * 219.37270 * 13 12 11 16 16 C 1.55165 * 102.94262 * 337.80843 * 13 12 11 17 17 H 1.08998 * 111.00183 * 277.38841 * 16 13 12 18 18 N 1.46494 * 111.00292 * 153.57742 * 16 13 12 19 19 C 1.36945 * 119.99612 * 155.00272 * 18 16 13 20 20 H 1.07999 * 120.00077 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99637 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00227 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47118 * 90.00067 * 23 21 19 25 25 H 1.48499 * 109.47293 * 210.00071 * 23 21 19 26 26 H 1.48504 * 109.47104 * 330.00316 * 23 21 19 27 27 C 1.47425 * 125.64842 * 0.05238 * 11 9 7 28 28 C 1.47421 * 125.65006 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47397 * 269.99548 * 1 2 3 30 30 H 1.08993 * 109.47542 * 30.00484 * 1 2 3 31 31 H 1.09001 * 109.46393 * 150.00316 * 1 2 3 32 32 H 1.09003 * 109.88245 * 59.48406 * 5 4 2 33 33 H 1.08998 * 109.88670 * 298.31466 * 5 4 2 34 34 H 1.08994 * 110.71886 * 219.44794 * 6 5 4 35 35 H 1.08997 * 110.71929 * 96.17130 * 6 5 4 36 36 H 1.09008 * 109.88274 * 59.56888 * 12 11 9 37 37 H 1.08997 * 110.01176 * 298.48202 * 12 11 9 38 38 H 1.09003 * 109.46945 * 173.60543 * 15 13 12 39 39 H 1.09002 * 109.47372 * 293.60767 * 15 13 12 40 40 H 1.09000 * 109.47087 * 53.60942 * 15 13 12 41 41 H 0.96995 * 120.00290 * 335.27163 * 18 16 13 42 42 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 43 43 H 1.09005 * 110.36318 * 85.24428 * 27 11 9 44 44 H 1.09002 * 110.37109 * 322.92868 * 27 11 9 45 45 H 1.09006 * 110.36774 * 85.33442 * 28 4 2 46 46 H 1.09000 * 110.36892 * 323.01574 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.5748 -2.5065 0.0006 6 6 2.7283 -3.5314 -0.0271 7 6 3.9081 -2.7110 -0.6123 8 1 3.8585 -2.6771 -1.7006 9 6 5.2319 -3.2647 -0.1517 10 8 5.2634 -4.2308 0.5808 11 7 6.3809 -2.6869 -0.5546 12 6 7.7352 -3.1223 -0.1835 13 6 8.7302 -2.1834 -0.8974 14 1 9.0451 -1.3783 -0.2335 15 6 9.9420 -2.9630 -1.4121 16 6 7.8943 -1.6250 -2.0793 17 1 7.8885 -2.3220 -2.9174 18 7 8.3880 -0.3104 -2.4967 19 6 8.1712 0.1278 -3.7759 20 1 7.6367 -0.4959 -4.4771 21 6 8.6385 1.3737 -4.1712 22 7 9.2903 2.1336 -3.3168 23 14 8.3435 1.9712 -5.9163 24 1 7.0570 2.7107 -5.9755 25 1 9.4513 2.8716 -6.3252 26 1 8.2875 0.8062 -6.8356 27 6 6.4879 -1.5131 -1.4402 28 6 3.6480 -1.3121 0.0001 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3632 -0.8901 -0.5138 32 1 0.9481 -2.6298 -0.8827 33 1 0.9787 -2.6437 0.9027 34 1 2.4826 -4.3710 -0.6772 35 1 2.9611 -3.8773 0.9800 36 1 7.8964 -4.1501 -0.5090 37 1 7.8672 -3.0507 0.8961 38 1 10.5721 -2.3029 -2.0082 39 1 10.5139 -3.3454 -0.5666 40 1 9.6032 -3.7959 -2.0281 41 1 8.8717 0.2479 -1.8682 42 1 9.6172 3.0041 -3.5932 43 1 6.4065 -0.5928 -0.8617 44 1 5.7173 -1.5473 -2.2103 45 1 4.0341 -1.2660 1.0184 46 1 4.1056 -0.5375 -0.6154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082887547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:38 Heat of formation + Delta-G solvation = -57.146560 kcal Electronic energy + Delta-G solvation = -26410.906216 eV Core-core repulsion = 22721.571275 eV Total energy + Delta-G solvation = -3689.334941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62255 -39.54404 -37.93952 -36.91063 -34.13196 -32.79962 -32.08041 -30.75068 -30.03088 -29.10077 -27.59306 -26.23907 -24.23611 -23.79815 -22.34313 -21.21256 -19.99394 -19.55133 -18.87860 -17.39013 -17.24978 -17.13114 -16.15758 -16.04473 -15.45331 -15.15340 -14.67232 -14.21657 -14.12431 -13.71325 -13.60104 -13.21651 -13.14348 -13.01988 -12.99968 -12.73524 -12.65498 -12.59735 -12.20497 -11.95779 -11.82062 -11.72331 -11.37540 -11.12681 -11.09692 -11.01830 -10.75338 -10.63306 -10.26431 -10.07664 -9.99850 -9.83503 -9.68507 -9.04233 -8.86429 -8.42489 -7.11598 -5.87106 -3.18260 2.48222 2.58003 2.80946 3.16245 3.38972 3.44292 3.45869 4.12036 4.24459 4.48729 4.59897 4.63574 4.79749 4.95127 4.99945 5.03094 5.08250 5.10713 5.15783 5.19879 5.28695 5.51855 5.55162 5.57230 5.60852 5.64338 5.71589 5.75099 5.79021 5.88939 5.90218 5.98721 6.04947 6.17886 6.20741 6.31737 6.43118 6.47189 6.58921 6.82128 7.31781 7.60721 7.69391 8.01255 8.22512 8.30308 9.42308 9.95164 10.29910 11.34693 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.004390 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.484249 B = 6376.430510 C = 8427.623195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.523 3.477 3 O -0.539 6.539 4 N -0.621 5.621 5 C 0.100 3.900 6 C -0.112 4.112 7 C -0.121 4.121 8 H 0.111 0.889 9 C 0.538 3.462 10 O -0.550 6.550 11 N -0.609 5.609 12 C 0.116 3.884 13 C -0.116 4.116 14 H 0.084 0.916 15 C -0.133 4.133 16 C 0.178 3.822 17 H 0.069 0.931 18 N -0.709 5.709 19 C -0.251 4.251 20 H 0.072 0.928 21 C -0.005 4.005 22 N -0.928 5.928 23 Si 0.907 3.093 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.068 3.932 28 C 0.118 3.882 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.964 -11.904 7.027 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.313 3.687 3 O -0.415 6.415 4 N -0.357 5.357 5 C -0.023 4.023 6 C -0.150 4.150 7 C -0.143 4.143 8 H 0.129 0.871 9 C 0.325 3.675 10 O -0.429 6.429 11 N -0.341 5.341 12 C -0.006 4.006 13 C -0.136 4.136 14 H 0.102 0.898 15 C -0.191 4.191 16 C 0.065 3.935 17 H 0.087 0.913 18 N -0.348 5.348 19 C -0.382 4.382 20 H 0.090 0.910 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.737 3.263 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.058 4.058 28 C -0.005 4.005 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.222 0.778 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.752 -11.724 7.235 19.466 hybrid contribution -0.065 0.621 -0.787 1.005 sum -13.817 -11.103 6.448 18.862 Atomic orbital electron populations 1.21878 0.91292 1.04897 1.04663 1.20533 0.90395 0.81986 0.75797 1.90785 1.70679 1.30519 1.49539 1.48558 1.07158 1.05993 1.73990 1.22130 0.96527 0.81642 1.01982 1.22552 0.91953 0.96881 1.03615 1.22457 0.93085 0.96141 1.02593 0.87135 1.19740 0.84260 0.83096 0.80361 1.90672 1.87225 1.27482 1.37500 1.48527 1.05424 1.31520 1.48639 1.21983 0.80979 0.98419 0.99256 1.22533 0.95071 0.97721 0.98237 0.89766 1.21653 0.97133 0.99803 1.00515 1.21345 0.89108 0.89458 0.93570 0.91343 1.42292 1.65622 1.14742 1.12151 1.19222 1.30858 0.99769 0.88314 0.91009 1.24755 1.00402 0.97037 0.98038 1.69653 1.42062 1.11513 1.34235 0.86208 0.77391 0.78497 0.84164 1.21545 1.21678 1.20664 1.23630 1.02713 0.86901 0.92517 1.22114 0.81005 0.95838 1.01530 0.88889 0.88774 0.90194 0.90955 0.90909 0.89342 0.88946 0.91580 0.91943 0.91274 0.93230 0.92940 0.77813 0.93280 0.90949 0.91209 0.91050 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.90 36.01 0.36 -0.92 16 2 C 0.52 6.69 7.96 -10.99 -0.09 6.60 16 3 O -0.54 -9.66 17.35 5.56 0.10 -9.56 16 4 N -0.62 -7.11 3.33 -170.52 -0.57 -7.68 16 5 C 0.10 0.78 6.16 -3.06 -0.02 0.76 16 6 C -0.11 -1.03 6.08 -24.89 -0.15 -1.18 16 7 C -0.12 -1.42 2.66 -89.62 -0.24 -1.66 16 8 H 0.11 1.22 7.72 -51.93 -0.40 0.82 16 9 C 0.54 7.92 7.19 -10.99 -0.08 7.84 16 10 O -0.55 -9.41 16.04 5.55 0.09 -9.32 16 11 N -0.61 -9.17 3.33 -170.54 -0.57 -9.74 16 12 C 0.12 1.68 6.47 -3.07 -0.02 1.66 16 13 C -0.12 -1.77 3.19 -88.78 -0.28 -2.05 16 14 H 0.08 1.34 8.00 -51.93 -0.42 0.92 16 15 C -0.13 -1.86 9.17 37.16 0.34 -1.52 16 16 C 0.18 3.22 3.16 -65.79 -0.21 3.02 16 17 H 0.07 1.27 8.00 -51.93 -0.42 0.86 16 18 N -0.71 -16.37 5.25 -51.36 -0.27 -16.64 16 19 C -0.25 -6.54 9.96 -15.06 -0.15 -6.69 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 22 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 23 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.07 1.12 5.37 -2.54 -0.01 1.11 16 28 C 0.12 1.53 5.88 -2.53 -0.01 1.52 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.42 7.06 -51.93 -0.37 0.06 16 32 H 0.07 0.43 7.77 -51.93 -0.40 0.03 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.96 7.39 -51.93 -0.38 0.57 16 36 H 0.07 0.93 7.78 -51.92 -0.40 0.52 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.39 9.62 7.76 -40.82 -0.32 9.30 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 1.29 7.94 -51.93 -0.41 0.87 16 44 H 0.07 1.11 7.39 -51.93 -0.38 0.73 16 45 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 46 H 0.09 1.39 7.22 -51.93 -0.37 1.01 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -32.90 371.13 -8.21 -41.11 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.62 Total: 7.60 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -0.66 Total: 8.24 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.68 Total: -60.33 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.19 Total: -18.88 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.90 -8.21 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082887547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.040 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds