Wall clock time and date at job start Fri Apr 10 2020 18:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99464 * 2 1 4 4 N 1.34766 * 120.00435 * 179.97438 * 2 1 3 5 5 C 1.47019 * 125.64802 * 0.02562 * 4 2 1 6 6 C 1.54331 * 107.27257 * 178.89721 * 5 4 2 7 7 C 1.55160 * 102.93809 * 337.80756 * 6 5 4 8 8 H 1.08999 * 111.00337 * 277.38590 * 7 6 5 9 9 C 1.50703 * 111.00145 * 153.57481 * 7 6 5 10 10 O 1.21288 * 120.00113 * 0.02562 * 9 7 6 11 11 N 1.34771 * 120.00115 * 179.97438 * 9 7 6 12 12 C 1.47019 * 125.65235 * 180.02562 * 11 9 7 13 13 C 1.54315 * 107.27613 * 178.98745 * 12 11 9 14 14 H 1.08996 * 110.72511 * 96.16929 * 13 12 11 15 15 C 1.53002 * 110.87430 * 219.37270 * 13 12 11 16 16 C 1.55165 * 102.94262 * 337.80843 * 13 12 11 17 17 H 1.08998 * 111.00183 * 277.38841 * 16 13 12 18 18 N 1.46494 * 111.00292 * 153.57742 * 16 13 12 19 19 C 1.36945 * 119.99612 * 155.00272 * 18 16 13 20 20 H 1.07999 * 120.00077 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99637 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00227 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47118 * 90.00067 * 23 21 19 25 25 H 1.48499 * 109.47293 * 210.00071 * 23 21 19 26 26 H 1.48504 * 109.47104 * 330.00316 * 23 21 19 27 27 C 1.47425 * 125.64842 * 0.05238 * 11 9 7 28 28 C 1.47421 * 125.65006 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47397 * 269.99548 * 1 2 3 30 30 H 1.08993 * 109.47542 * 30.00484 * 1 2 3 31 31 H 1.09001 * 109.46393 * 150.00316 * 1 2 3 32 32 H 1.09003 * 109.88245 * 59.48406 * 5 4 2 33 33 H 1.08998 * 109.88670 * 298.31466 * 5 4 2 34 34 H 1.08994 * 110.71886 * 219.44794 * 6 5 4 35 35 H 1.08997 * 110.71929 * 96.17130 * 6 5 4 36 36 H 1.09008 * 109.88274 * 59.56888 * 12 11 9 37 37 H 1.08997 * 110.01176 * 298.48202 * 12 11 9 38 38 H 1.09003 * 109.46945 * 173.60543 * 15 13 12 39 39 H 1.09002 * 109.47372 * 293.60767 * 15 13 12 40 40 H 1.09000 * 109.47087 * 53.60942 * 15 13 12 41 41 H 0.96995 * 120.00290 * 335.27163 * 18 16 13 42 42 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 43 43 H 1.09005 * 110.36318 * 85.24428 * 27 11 9 44 44 H 1.09002 * 110.37109 * 322.92868 * 27 11 9 45 45 H 1.09006 * 110.36774 * 85.33442 * 28 4 2 46 46 H 1.09000 * 110.36892 * 323.01574 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.5748 -2.5065 0.0006 6 6 2.7283 -3.5314 -0.0271 7 6 3.9081 -2.7110 -0.6123 8 1 3.8585 -2.6771 -1.7006 9 6 5.2319 -3.2647 -0.1517 10 8 5.2634 -4.2308 0.5808 11 7 6.3809 -2.6869 -0.5546 12 6 7.7352 -3.1223 -0.1835 13 6 8.7302 -2.1834 -0.8974 14 1 9.0451 -1.3783 -0.2335 15 6 9.9420 -2.9630 -1.4121 16 6 7.8943 -1.6250 -2.0793 17 1 7.8885 -2.3220 -2.9174 18 7 8.3880 -0.3104 -2.4967 19 6 8.1712 0.1278 -3.7759 20 1 7.6367 -0.4959 -4.4771 21 6 8.6385 1.3737 -4.1712 22 7 9.2903 2.1336 -3.3168 23 14 8.3435 1.9712 -5.9163 24 1 7.0570 2.7107 -5.9755 25 1 9.4513 2.8716 -6.3252 26 1 8.2875 0.8062 -6.8356 27 6 6.4879 -1.5131 -1.4402 28 6 3.6480 -1.3121 0.0001 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3632 -0.8901 -0.5138 32 1 0.9481 -2.6298 -0.8827 33 1 0.9787 -2.6437 0.9027 34 1 2.4826 -4.3710 -0.6772 35 1 2.9611 -3.8773 0.9800 36 1 7.8964 -4.1501 -0.5090 37 1 7.8672 -3.0507 0.8961 38 1 10.5721 -2.3029 -2.0082 39 1 10.5139 -3.3454 -0.5666 40 1 9.6032 -3.7959 -2.0281 41 1 8.8717 0.2479 -1.8682 42 1 9.6172 3.0041 -3.5932 43 1 6.4065 -0.5928 -0.8617 44 1 5.7173 -1.5473 -2.2103 45 1 4.0341 -1.2660 1.0184 46 1 4.1056 -0.5375 -0.6154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082887547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:38 Heat of formation + Delta-G solvation = -79.768105 kcal Electronic energy + Delta-G solvation = -26411.887159 eV Core-core repulsion = 22721.571275 eV Total energy + Delta-G solvation = -3690.315885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70895 -40.67198 -39.20407 -38.01992 -35.89329 -34.11507 -33.18328 -32.47908 -30.79006 -29.93959 -29.18843 -27.37850 -25.92286 -24.93599 -23.45495 -22.47760 -21.35564 -20.53677 -19.97713 -19.15329 -18.46571 -18.10165 -17.45571 -17.23302 -16.56534 -16.35985 -16.13760 -15.52659 -15.37410 -15.11931 -14.62493 -14.60733 -14.47910 -14.34800 -14.02851 -13.79148 -13.77187 -13.33628 -13.18680 -13.08707 -13.00434 -12.91211 -12.87127 -12.61640 -12.37315 -12.20979 -12.15480 -12.01565 -11.87972 -11.72046 -11.43086 -11.16856 -10.99266 -10.87103 -9.79588 -9.74108 -9.05747 -7.95676 -5.25386 1.39931 1.48410 1.49670 1.55696 1.57315 1.79234 2.06793 2.55769 3.22719 3.26626 3.36405 3.53977 3.76356 3.78308 3.84622 3.92941 4.04246 4.15982 4.17030 4.24356 4.32615 4.43479 4.48199 4.51708 4.55969 4.61029 4.66940 4.71260 4.76091 4.85565 4.88653 4.93920 5.06179 5.07909 5.10065 5.11812 5.16392 5.25694 5.33427 5.44954 5.53804 6.25009 6.43355 6.44910 7.00983 7.07080 7.32933 8.04300 8.27884 9.27259 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.004390 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.484249 B = 6376.430510 C = 8427.623195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.512 3.488 3 O -0.606 6.606 4 N -0.621 5.621 5 C 0.100 3.900 6 C -0.105 4.105 7 C -0.115 4.115 8 H 0.122 0.878 9 C 0.538 3.462 10 O -0.570 6.570 11 N -0.610 5.610 12 C 0.119 3.881 13 C -0.106 4.106 14 H 0.075 0.925 15 C -0.128 4.128 16 C 0.171 3.829 17 H 0.070 0.930 18 N -0.720 5.720 19 C -0.242 4.242 20 H 0.080 0.920 21 C -0.068 4.068 22 N -0.967 5.967 23 Si 0.967 3.033 24 H -0.291 1.291 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.086 3.914 28 C 0.119 3.881 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.376 0.624 42 H 0.251 0.749 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.302 -14.448 6.677 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.304 3.696 3 O -0.487 6.487 4 N -0.355 5.355 5 C -0.022 4.022 6 C -0.143 4.143 7 C -0.137 4.137 8 H 0.139 0.861 9 C 0.327 3.673 10 O -0.450 6.450 11 N -0.342 5.342 12 C -0.004 4.004 13 C -0.126 4.126 14 H 0.093 0.907 15 C -0.185 4.185 16 C 0.061 3.939 17 H 0.088 0.912 18 N -0.358 5.358 19 C -0.374 4.374 20 H 0.098 0.902 21 C -0.261 4.261 22 N -0.617 5.617 23 Si 0.796 3.204 24 H -0.219 1.219 25 H -0.224 1.224 26 H -0.191 1.191 27 C -0.040 4.040 28 C -0.005 4.005 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.208 0.792 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.136 -14.372 6.889 22.680 hybrid contribution 0.655 1.295 -0.595 1.568 sum -15.481 -13.077 6.294 21.220 Atomic orbital electron populations 1.21909 0.86812 1.06431 1.06418 1.21582 0.92463 0.81182 0.74335 1.90752 1.72330 1.32916 1.52724 1.48717 1.06408 1.07463 1.72892 1.22418 0.96187 0.78748 1.04800 1.22589 0.90972 0.97572 1.03194 1.22454 0.92507 0.95596 1.03154 0.86058 1.20208 0.84853 0.82587 0.79663 1.90663 1.87571 1.28446 1.38340 1.48551 1.06121 1.31034 1.48520 1.21997 0.80327 0.98577 0.99463 1.22432 0.95602 0.97767 0.96797 0.90698 1.21605 0.96257 0.99393 1.01252 1.21521 0.90363 0.87325 0.94741 0.91235 1.42401 1.65932 1.16329 1.11184 1.19614 1.28890 0.99451 0.89400 0.90186 1.25491 1.01403 0.97716 1.01482 1.69803 1.44202 1.11705 1.35955 0.85244 0.76533 0.78092 0.80518 1.21879 1.22442 1.19052 1.23194 1.01589 0.86791 0.92450 1.21915 0.82566 0.95837 1.00231 0.86826 0.88917 0.86955 0.87854 0.88314 0.87032 0.90114 0.90379 0.91403 0.93460 0.90866 0.91824 0.79188 0.94054 0.92843 0.90676 0.92452 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.90 71.24 0.71 -1.23 16 2 C 0.51 12.68 7.96 87.66 0.70 13.38 16 3 O -0.61 -22.55 17.35 -3.03 -0.05 -22.60 16 4 N -0.62 -13.31 3.33 -811.81 -2.70 -16.01 16 5 C 0.10 1.17 6.16 86.73 0.53 1.70 16 6 C -0.11 -1.61 6.08 31.79 0.19 -1.42 16 7 C -0.12 -2.54 2.66 -10.15 -0.03 -2.57 16 8 H 0.12 2.44 7.72 -2.39 -0.02 2.42 16 9 C 0.54 15.22 7.19 87.66 0.63 15.85 16 10 O -0.57 -18.64 16.04 -3.05 -0.05 -18.69 16 11 N -0.61 -17.96 3.33 -811.85 -2.70 -20.66 16 12 C 0.12 3.29 6.47 86.73 0.56 3.85 16 13 C -0.11 -3.20 3.19 -9.60 -0.03 -3.23 16 14 H 0.07 2.41 8.00 -2.39 -0.02 2.39 16 15 C -0.13 -3.40 9.17 71.98 0.66 -2.74 16 16 C 0.17 6.20 3.16 46.38 0.15 6.35 16 17 H 0.07 2.53 8.00 -2.39 -0.02 2.51 16 18 N -0.72 -33.94 5.25 -316.41 -1.66 -35.60 16 19 C -0.24 -12.70 9.96 84.03 0.84 -11.87 16 20 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 21 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 22 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 23 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.09 2.83 5.37 86.85 0.47 3.30 16 28 C 0.12 3.10 5.88 86.85 0.51 3.61 16 29 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 0.65 7.06 -2.39 -0.02 0.64 16 32 H 0.10 0.67 7.77 -2.39 -0.02 0.65 16 33 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.47 7.39 -2.39 -0.02 1.45 16 36 H 0.08 2.01 7.78 -2.38 -0.02 2.00 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.55 8.07 -2.39 -0.02 1.53 16 41 H 0.38 19.35 7.76 -92.71 -0.72 18.63 16 42 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 43 H 0.05 1.99 7.94 -2.38 -0.02 1.97 16 44 H 0.07 2.39 7.39 -2.39 -0.02 2.37 16 45 H 0.06 1.63 8.03 -2.38 -0.02 1.61 16 46 H 0.06 2.01 7.22 -2.39 -0.02 1.99 16 Total: -1.00 -74.34 371.13 1.75 -72.59 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.25 Total: 29.81 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 6.35 Total: 21.66 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -6.78 Total: -129.94 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.10 Total: -41.29 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -74.34 1.75 -72.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082887547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.174 kcal (2) G-P(sol) polarization free energy of solvation -74.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds