Wall clock time and date at job start Fri Apr 10 2020 18:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21286 * 119.99898 * 2 1 4 4 N 1.34777 * 120.00419 * 180.02562 * 2 1 3 5 5 C 1.47421 * 125.64549 * 359.97322 * 4 2 1 6 6 C 1.54906 * 104.83210 * 155.90870 * 5 4 2 7 7 C 1.55161 * 101.58344 * 37.00881 * 6 5 4 8 8 H 1.09001 * 110.71802 * 83.03599 * 7 6 5 9 9 C 1.50696 * 110.72286 * 206.13442 * 7 6 5 10 10 O 1.21280 * 120.00018 * 359.97438 * 9 7 6 11 11 N 1.34778 * 119.99911 * 179.97438 * 9 7 6 12 12 C 1.47425 * 125.64271 * 180.02562 * 11 9 7 13 13 C 1.54918 * 104.82827 * 204.07868 * 12 11 9 14 14 H 1.09000 * 110.99891 * 81.06585 * 13 12 11 15 15 C 1.52996 * 111.00284 * 204.91696 * 13 12 11 16 16 C 1.55157 * 101.58155 * 322.99497 * 13 12 11 17 17 H 1.08993 * 110.71794 * 277.13272 * 16 13 12 18 18 N 1.46501 * 110.71624 * 153.86110 * 16 13 12 19 19 C 1.36939 * 119.99602 * 154.99914 * 18 16 13 20 20 H 1.07999 * 120.00120 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99856 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99747 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47115 * 89.99885 * 23 21 19 25 25 H 1.48498 * 109.46776 * 209.99829 * 23 21 19 26 26 H 1.48495 * 109.47288 * 329.99965 * 23 21 19 27 27 C 1.47015 * 125.64845 * 359.97438 * 11 9 7 28 28 C 1.47018 * 125.64929 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47036 * 269.99896 * 1 2 3 30 30 H 1.08993 * 109.47396 * 30.00234 * 1 2 3 31 31 H 1.09002 * 109.47125 * 150.00423 * 1 2 3 32 32 H 1.09003 * 110.37151 * 37.06984 * 5 4 2 33 33 H 1.09005 * 110.36861 * 274.74354 * 5 4 2 34 34 H 1.08998 * 111.00845 * 278.93434 * 6 5 4 35 35 H 1.09005 * 111.03566 * 155.09520 * 6 5 4 36 36 H 1.08999 * 110.36633 * 85.25141 * 12 11 9 37 37 H 1.08996 * 110.37033 * 322.91522 * 12 11 9 38 38 H 1.08999 * 109.46952 * 172.20072 * 15 13 12 39 39 H 1.08996 * 109.47229 * 292.19900 * 15 13 12 40 40 H 1.09000 * 109.47156 * 52.20321 * 15 13 12 41 41 H 0.96994 * 120.00419 * 335.00415 * 18 16 13 42 42 H 0.96997 * 119.99627 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.88350 * 59.56990 * 27 11 9 44 44 H 1.08998 * 109.88602 * 298.40656 * 27 11 9 45 45 H 1.08996 * 109.88651 * 61.60524 * 28 4 2 46 46 H 1.08999 * 109.88396 * 300.43543 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.5731 -2.5102 -0.0006 6 6 2.6548 -3.4350 -0.6124 7 6 3.9551 -2.8231 -0.0274 8 1 4.1397 -3.1997 0.9787 9 6 5.1305 -3.1096 -0.9259 10 8 4.9724 -3.7436 -1.9476 11 7 6.3574 -2.6611 -0.5940 12 6 7.5887 -2.8680 -1.3779 13 6 8.7396 -2.7448 -0.3482 14 1 8.8713 -3.6755 0.2035 15 6 10.0431 -2.3250 -1.0304 16 6 8.2092 -1.6191 0.5786 17 1 8.4215 -0.6380 0.1539 18 7 8.7833 -1.7397 1.9210 19 6 8.8820 -0.6356 2.7251 20 1 8.5372 0.3241 2.3694 21 6 9.4264 -0.7497 3.9969 22 7 9.8472 -1.9191 4.4302 23 14 9.5618 0.7566 5.0934 24 1 8.3254 0.8910 5.9048 25 1 10.7321 0.6086 5.9954 26 1 9.7355 1.9676 4.2517 27 6 6.6892 -1.8839 0.6090 28 6 3.6440 -1.3118 -0.0001 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.6736 -2.5196 -0.6162 33 1 1.3401 -2.8212 1.0179 34 1 2.6501 -3.3750 -1.7008 35 1 2.5233 -4.4646 -0.2795 36 1 7.6830 -2.1001 -2.1458 37 1 7.5886 -3.8598 -1.8299 38 1 10.7973 -2.1118 -0.2729 39 1 10.3927 -3.1322 -1.6740 40 1 9.8680 -1.4319 -1.6302 41 1 9.0934 -2.6015 2.2403 42 1 10.2272 -1.9988 5.3191 43 1 6.4298 -2.4534 1.5015 44 1 6.1479 -0.9379 0.6001 45 1 4.0606 -0.8638 0.9021 46 1 4.0644 -0.8309 -0.8833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082887548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:41 Heat of formation + Delta-G solvation = -56.430971 kcal Electronic energy + Delta-G solvation = -26394.829199 eV Core-core repulsion = 22705.525288 eV Total energy + Delta-G solvation = -3689.303911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64777 -39.54687 -37.94004 -36.91253 -34.13415 -32.81697 -32.07480 -30.75457 -30.08149 -29.09636 -27.58658 -26.21083 -24.28594 -23.79898 -22.33696 -21.18037 -20.00216 -19.59872 -18.90895 -17.38595 -17.20608 -17.13352 -16.32639 -15.84766 -15.57021 -15.11387 -14.84125 -14.41735 -13.94907 -13.71482 -13.59251 -13.23537 -13.16316 -13.04055 -12.89498 -12.68360 -12.66368 -12.39235 -12.21732 -12.15741 -11.86323 -11.53979 -11.49691 -11.15695 -11.12515 -10.99727 -10.76475 -10.63441 -10.28207 -10.09613 -10.01492 -9.82818 -9.69116 -9.03634 -8.87046 -8.40396 -7.13635 -5.88541 -3.19518 2.46855 2.57224 2.81437 3.15592 3.38173 3.44764 3.45398 4.11800 4.23244 4.46647 4.55375 4.62502 4.85776 4.92560 4.97406 5.04636 5.09195 5.11626 5.13259 5.19008 5.26054 5.51948 5.53967 5.55610 5.58176 5.64622 5.72998 5.74168 5.79265 5.87575 5.93669 5.97060 6.01761 6.17066 6.21549 6.33715 6.43460 6.50397 6.58952 6.82388 7.29145 7.61024 7.70981 7.97995 8.23419 8.29109 9.41230 9.93974 10.28977 11.33230 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.011354 B = 0.004136 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.583254 B = 6767.903179 C = 8500.257132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.524 3.476 3 O -0.543 6.543 4 N -0.620 5.620 5 C 0.097 3.903 6 C -0.113 4.113 7 C -0.120 4.120 8 H 0.112 0.888 9 C 0.538 3.462 10 O -0.550 6.550 11 N -0.609 5.609 12 C 0.113 3.887 13 C -0.115 4.115 14 H 0.083 0.917 15 C -0.133 4.133 16 C 0.177 3.823 17 H 0.070 0.930 18 N -0.710 5.710 19 C -0.250 4.250 20 H 0.073 0.927 21 C -0.006 4.006 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.068 3.932 28 C 0.120 3.880 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.374 -3.731 -10.152 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.313 3.687 3 O -0.420 6.420 4 N -0.355 5.355 5 C -0.025 4.025 6 C -0.151 4.151 7 C -0.141 4.141 8 H 0.130 0.870 9 C 0.325 3.675 10 O -0.429 6.429 11 N -0.342 5.342 12 C -0.010 4.010 13 C -0.135 4.135 14 H 0.102 0.898 15 C -0.191 4.191 16 C 0.065 3.935 17 H 0.088 0.912 18 N -0.350 5.350 19 C -0.380 4.380 20 H 0.091 0.909 21 C -0.203 4.203 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.058 4.058 28 C -0.003 4.003 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.212 -3.252 -10.586 18.816 hybrid contribution 0.163 0.430 1.012 1.112 sum -15.049 -2.822 -9.574 18.058 Atomic orbital electron populations 1.21891 0.91272 1.04815 1.04815 1.20527 0.90392 0.81955 0.75810 1.90760 1.70736 1.30631 1.49899 1.48575 1.07090 1.06149 1.73717 1.22460 0.97072 0.81651 1.01357 1.22709 0.91194 0.98958 1.02272 1.22347 0.94270 0.96426 1.01090 0.86958 1.19792 0.82808 0.79004 0.85882 1.90668 1.84485 1.41274 1.26448 1.48541 1.06978 1.53704 1.24944 1.22290 0.83021 1.01482 0.94167 1.22662 0.93995 1.00544 0.96263 0.89847 1.21602 0.96752 1.00425 1.00317 1.21242 0.88539 0.96470 0.87286 0.91241 1.42353 1.71868 1.09839 1.10897 1.19263 1.34781 0.88849 0.95149 0.90923 1.24750 1.01076 0.96816 0.97659 1.69657 1.46677 1.22406 1.18910 0.86205 0.77266 0.82194 0.80616 1.21595 1.21706 1.20595 1.23465 1.01400 0.94721 0.86228 1.21808 0.80940 0.94238 1.03310 0.88741 0.88860 0.90138 0.89980 0.90735 0.89030 0.89110 0.91593 0.90916 0.91270 0.93200 0.92853 0.77867 0.93336 0.90752 0.91978 0.89986 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 9.90 36.01 0.36 -0.88 16 2 C 0.52 6.52 7.96 -10.99 -0.09 6.43 16 3 O -0.54 -9.40 17.43 5.55 0.10 -9.31 16 4 N -0.62 -7.04 3.33 -170.52 -0.57 -7.61 16 5 C 0.10 0.75 6.67 -2.53 -0.02 0.74 16 6 C -0.11 -1.06 6.18 -24.58 -0.15 -1.21 16 7 C -0.12 -1.42 2.74 -89.94 -0.25 -1.66 16 8 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 9 C 0.54 8.07 7.05 -10.99 -0.08 7.99 16 10 O -0.55 -9.60 15.96 5.56 0.09 -9.51 16 11 N -0.61 -9.27 3.33 -170.52 -0.57 -9.84 16 12 C 0.11 1.64 6.38 -2.52 -0.02 1.62 16 13 C -0.11 -1.75 3.27 -88.47 -0.29 -2.04 16 14 H 0.08 1.35 8.01 -51.93 -0.42 0.93 16 15 C -0.13 -1.84 9.31 37.16 0.35 -1.50 16 16 C 0.18 3.20 3.08 -66.09 -0.20 3.00 16 17 H 0.07 1.29 7.99 -51.93 -0.41 0.87 16 18 N -0.71 -16.26 5.15 -51.65 -0.27 -16.52 16 19 C -0.25 -6.47 9.96 -15.06 -0.15 -6.62 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 22 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 23 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 C 0.07 1.11 5.92 -3.07 -0.02 1.09 16 28 C 0.12 1.55 5.30 -3.07 -0.02 1.53 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.40 6.52 -51.93 -0.34 0.06 16 32 H 0.08 0.45 6.75 -51.93 -0.35 0.10 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 1.00 7.40 -51.93 -0.38 0.61 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.91 7.98 -51.93 -0.41 0.49 16 37 H 0.07 1.04 8.04 -51.93 -0.42 0.63 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.39 9.51 7.76 -40.82 -0.32 9.19 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 43 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 44 H 0.06 1.00 6.63 -51.93 -0.34 0.66 16 45 H 0.08 1.14 7.39 -51.93 -0.38 0.75 16 46 H 0.07 1.04 7.81 -51.93 -0.41 0.64 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -32.78 369.84 -8.13 -40.91 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.53 Total: 7.48 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -0.67 Total: 8.22 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.68 Total: -59.95 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.19 Total: -18.82 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.78 -8.13 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082887548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.520 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds