Wall clock time and date at job start Fri Apr 10 2020 18:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21286 * 119.99898 * 2 1 4 4 N 1.34777 * 120.00419 * 180.02562 * 2 1 3 5 5 C 1.47421 * 125.64549 * 359.97322 * 4 2 1 6 6 C 1.54906 * 104.83210 * 155.90870 * 5 4 2 7 7 C 1.55161 * 101.58344 * 37.00881 * 6 5 4 8 8 H 1.09001 * 110.71802 * 83.03599 * 7 6 5 9 9 C 1.50696 * 110.72286 * 206.13442 * 7 6 5 10 10 O 1.21280 * 120.00018 * 359.97438 * 9 7 6 11 11 N 1.34778 * 119.99911 * 179.97438 * 9 7 6 12 12 C 1.47425 * 125.64271 * 180.02562 * 11 9 7 13 13 C 1.54918 * 104.82827 * 204.07868 * 12 11 9 14 14 H 1.09000 * 110.99891 * 81.06585 * 13 12 11 15 15 C 1.52996 * 111.00284 * 204.91696 * 13 12 11 16 16 C 1.55157 * 101.58155 * 322.99497 * 13 12 11 17 17 H 1.08993 * 110.71794 * 277.13272 * 16 13 12 18 18 N 1.46501 * 110.71624 * 153.86110 * 16 13 12 19 19 C 1.36939 * 119.99602 * 154.99914 * 18 16 13 20 20 H 1.07999 * 120.00120 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99856 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99747 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47115 * 89.99885 * 23 21 19 25 25 H 1.48498 * 109.46776 * 209.99829 * 23 21 19 26 26 H 1.48495 * 109.47288 * 329.99965 * 23 21 19 27 27 C 1.47015 * 125.64845 * 359.97438 * 11 9 7 28 28 C 1.47018 * 125.64929 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47036 * 269.99896 * 1 2 3 30 30 H 1.08993 * 109.47396 * 30.00234 * 1 2 3 31 31 H 1.09002 * 109.47125 * 150.00423 * 1 2 3 32 32 H 1.09003 * 110.37151 * 37.06984 * 5 4 2 33 33 H 1.09005 * 110.36861 * 274.74354 * 5 4 2 34 34 H 1.08998 * 111.00845 * 278.93434 * 6 5 4 35 35 H 1.09005 * 111.03566 * 155.09520 * 6 5 4 36 36 H 1.08999 * 110.36633 * 85.25141 * 12 11 9 37 37 H 1.08996 * 110.37033 * 322.91522 * 12 11 9 38 38 H 1.08999 * 109.46952 * 172.20072 * 15 13 12 39 39 H 1.08996 * 109.47229 * 292.19900 * 15 13 12 40 40 H 1.09000 * 109.47156 * 52.20321 * 15 13 12 41 41 H 0.96994 * 120.00419 * 335.00415 * 18 16 13 42 42 H 0.96997 * 119.99627 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.88350 * 59.56990 * 27 11 9 44 44 H 1.08998 * 109.88602 * 298.40656 * 27 11 9 45 45 H 1.08996 * 109.88651 * 61.60524 * 28 4 2 46 46 H 1.08999 * 109.88396 * 300.43543 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.5731 -2.5102 -0.0006 6 6 2.6548 -3.4350 -0.6124 7 6 3.9551 -2.8231 -0.0274 8 1 4.1397 -3.1997 0.9787 9 6 5.1305 -3.1096 -0.9259 10 8 4.9724 -3.7436 -1.9476 11 7 6.3574 -2.6611 -0.5940 12 6 7.5887 -2.8680 -1.3779 13 6 8.7396 -2.7448 -0.3482 14 1 8.8713 -3.6755 0.2035 15 6 10.0431 -2.3250 -1.0304 16 6 8.2092 -1.6191 0.5786 17 1 8.4215 -0.6380 0.1539 18 7 8.7833 -1.7397 1.9210 19 6 8.8820 -0.6356 2.7251 20 1 8.5372 0.3241 2.3694 21 6 9.4264 -0.7497 3.9969 22 7 9.8472 -1.9191 4.4302 23 14 9.5618 0.7566 5.0934 24 1 8.3254 0.8910 5.9048 25 1 10.7321 0.6086 5.9954 26 1 9.7355 1.9676 4.2517 27 6 6.6892 -1.8839 0.6090 28 6 3.6440 -1.3118 -0.0001 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.6736 -2.5196 -0.6162 33 1 1.3401 -2.8212 1.0179 34 1 2.6501 -3.3750 -1.7008 35 1 2.5233 -4.4646 -0.2795 36 1 7.6830 -2.1001 -2.1458 37 1 7.5886 -3.8598 -1.8299 38 1 10.7973 -2.1118 -0.2729 39 1 10.3927 -3.1322 -1.6740 40 1 9.8680 -1.4319 -1.6302 41 1 9.0934 -2.6015 2.2403 42 1 10.2272 -1.9988 5.3191 43 1 6.4298 -2.4534 1.5015 44 1 6.1479 -0.9379 0.6001 45 1 4.0606 -0.8638 0.9021 46 1 4.0644 -0.8309 -0.8833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082887548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:40 Heat of formation + Delta-G solvation = -78.803108 kcal Electronic energy + Delta-G solvation = -26395.799328 eV Core-core repulsion = 22705.525288 eV Total energy + Delta-G solvation = -3690.274039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73136 -40.66296 -39.20358 -38.01575 -35.88777 -34.12818 -33.17415 -32.46976 -30.83231 -29.92939 -29.17610 -27.35206 -25.94363 -24.93117 -23.46600 -22.42253 -21.40261 -20.50803 -20.04812 -19.12093 -18.50455 -18.05966 -17.45481 -17.15636 -16.58875 -16.51539 -16.06166 -15.78572 -15.37927 -15.08530 -14.73241 -14.62448 -14.39706 -14.12315 -13.95770 -13.80712 -13.51617 -13.42414 -13.30231 -13.04199 -13.02553 -12.89755 -12.86395 -12.61823 -12.43378 -12.23119 -12.16585 -12.05353 -11.86972 -11.70626 -11.46607 -11.12418 -11.00522 -10.88259 -9.81364 -9.69882 -9.07092 -7.95773 -5.25129 1.40903 1.48651 1.49667 1.54696 1.57317 1.81552 2.05347 2.55551 3.22508 3.28670 3.36114 3.50382 3.74049 3.80394 3.84298 3.87314 4.04990 4.16229 4.21201 4.27881 4.32869 4.43139 4.44386 4.51478 4.58404 4.60835 4.66167 4.70219 4.75586 4.86497 4.88472 4.92865 5.05818 5.07474 5.10561 5.14651 5.18872 5.24426 5.31195 5.47136 5.54248 6.25242 6.43863 6.44279 7.00444 7.06114 7.33613 8.04189 8.28819 9.26843 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.011354 B = 0.004136 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.583254 B = 6767.903179 C = 8500.257132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.512 3.488 3 O -0.606 6.606 4 N -0.621 5.621 5 C 0.099 3.901 6 C -0.108 4.108 7 C -0.115 4.115 8 H 0.123 0.877 9 C 0.535 3.465 10 O -0.573 6.573 11 N -0.611 5.611 12 C 0.116 3.884 13 C -0.103 4.103 14 H 0.074 0.926 15 C -0.128 4.128 16 C 0.170 3.830 17 H 0.067 0.933 18 N -0.719 5.719 19 C -0.243 4.243 20 H 0.076 0.924 21 C -0.064 4.064 22 N -0.964 5.964 23 Si 0.964 3.036 24 H -0.289 1.289 25 H -0.296 1.296 26 H -0.272 1.272 27 C 0.085 3.915 28 C 0.122 3.878 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.541 -4.295 -10.910 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.304 3.696 3 O -0.487 6.487 4 N -0.355 5.355 5 C -0.022 4.022 6 C -0.146 4.146 7 C -0.137 4.137 8 H 0.141 0.859 9 C 0.324 3.676 10 O -0.453 6.453 11 N -0.344 5.344 12 C -0.007 4.007 13 C -0.123 4.123 14 H 0.093 0.907 15 C -0.186 4.186 16 C 0.059 3.941 17 H 0.085 0.915 18 N -0.358 5.358 19 C -0.374 4.374 20 H 0.094 0.906 21 C -0.257 4.257 22 N -0.614 5.614 23 Si 0.794 3.206 24 H -0.216 1.216 25 H -0.223 1.223 26 H -0.197 1.197 27 C -0.041 4.041 28 C -0.002 4.002 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.209 0.791 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.421 -3.838 -11.392 21.166 hybrid contribution 0.825 0.572 1.137 1.517 sum -16.596 -3.266 -10.255 19.780 Atomic orbital electron populations 1.21926 0.86836 1.06438 1.06470 1.21577 0.92452 0.81153 0.74374 1.90727 1.72317 1.32853 1.52838 1.48755 1.06387 1.07625 1.72734 1.22741 0.97240 0.78887 1.03340 1.22744 0.90031 1.00450 1.01352 1.22365 0.94267 0.95887 1.01156 0.85863 1.20308 0.83192 0.78181 0.85880 1.90655 1.84806 1.42296 1.27522 1.48585 1.07638 1.53594 1.24551 1.22319 0.82199 1.02239 0.93929 1.22552 0.95141 0.98865 0.95776 0.90713 1.21562 0.95172 1.01839 0.99995 1.21413 0.89440 0.97563 0.85667 0.91515 1.42422 1.72426 1.08593 1.12329 1.19586 1.32830 0.89708 0.95309 0.90612 1.25422 1.02047 0.99052 0.99170 1.69790 1.48514 1.24131 1.18971 0.85286 0.76688 0.79744 0.78921 1.21638 1.22307 1.19659 1.23033 0.99880 0.94763 0.86397 1.21610 0.82528 0.94658 1.01372 0.86853 0.88745 0.87009 0.86704 0.88367 0.90524 0.86942 0.90460 0.90317 0.93429 0.90831 0.91744 0.79054 0.93976 0.91800 0.91936 0.91621 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.90 71.24 0.71 -1.13 16 2 C 0.51 12.23 7.96 87.66 0.70 12.92 16 3 O -0.61 -21.46 17.43 -3.05 -0.05 -21.51 16 4 N -0.62 -13.17 3.33 -811.81 -2.70 -15.87 16 5 C 0.10 1.17 6.67 86.85 0.58 1.75 16 6 C -0.11 -1.74 6.18 31.99 0.20 -1.54 16 7 C -0.12 -2.60 2.74 -10.35 -0.03 -2.63 16 8 H 0.12 2.53 8.14 -2.39 -0.02 2.52 16 9 C 0.54 15.66 7.05 87.66 0.62 16.28 16 10 O -0.57 -19.41 15.96 -3.03 -0.05 -19.46 16 11 N -0.61 -18.31 3.33 -811.80 -2.70 -21.01 16 12 C 0.12 3.21 6.38 86.86 0.55 3.77 16 13 C -0.10 -3.10 3.27 -9.40 -0.03 -3.13 16 14 H 0.07 2.40 8.01 -2.39 -0.02 2.38 16 15 C -0.13 -3.41 9.31 71.98 0.67 -2.74 16 16 C 0.17 6.15 3.08 46.18 0.14 6.30 16 17 H 0.07 2.47 7.99 -2.39 -0.02 2.45 16 18 N -0.72 -33.40 5.15 -317.32 -1.63 -35.03 16 19 C -0.24 -12.69 9.96 84.03 0.84 -11.85 16 20 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 21 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 22 N -0.96 -56.45 13.06 21.65 0.28 -56.17 16 23 Si 0.96 44.85 29.55 68.60 2.03 46.88 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 27 C 0.09 2.80 5.92 86.73 0.51 3.31 16 28 C 0.12 3.15 5.30 86.73 0.46 3.61 16 29 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 0.58 6.52 -2.39 -0.02 0.57 16 32 H 0.11 0.67 6.75 -2.39 -0.02 0.66 16 33 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.08 1.51 7.40 -2.39 -0.02 1.50 16 35 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.08 2.00 7.98 -2.39 -0.02 1.98 16 37 H 0.08 2.14 8.04 -2.39 -0.02 2.12 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.56 8.07 -2.39 -0.02 1.54 16 41 H 0.38 18.95 7.76 -92.71 -0.72 18.24 16 42 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 44 H 0.06 2.05 6.63 -2.39 -0.02 2.03 16 45 H 0.07 1.88 7.39 -2.39 -0.02 1.86 16 46 H 0.05 1.44 7.81 -2.39 -0.02 1.42 16 Total: -1.00 -73.23 369.84 1.81 -71.42 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.26 Total: 28.87 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: 6.38 Total: 21.89 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -6.75 Total: -128.09 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -0.10 Total: -40.97 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -73.23 1.81 -71.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082887548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.385 kcal (2) G-P(sol) polarization free energy of solvation -73.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds