Wall clock time and date at job start Fri Apr 10 2020 18:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.46862 * 2 1 4 4 C 1.46770 * 124.34913 * 269.99814 * 3 2 1 5 5 C 1.54483 * 105.47141 * 197.03872 * 4 3 2 6 6 H 1.08998 * 110.96651 * 92.70136 * 5 4 3 7 7 C 1.50691 * 110.96783 * 216.46100 * 5 4 3 8 8 O 1.21284 * 120.00320 * 8.75558 * 7 5 4 9 9 N 1.34780 * 120.00175 * 188.75124 * 7 5 4 10 10 C 1.46503 * 119.99873 * 5.07533 * 9 7 5 11 11 C 1.46503 * 120.00096 * 185.07310 * 9 7 5 12 12 C 1.53006 * 109.46971 * 92.92080 * 11 9 7 13 13 H 1.09001 * 112.73714 * 316.77279 * 12 11 9 14 14 C 1.53492 * 113.46615 * 87.59068 * 12 11 9 15 15 C 1.53492 * 83.34560 * 140.84841 * 14 12 11 16 16 N 1.47060 * 113.46632 * 186.02616 * 12 11 9 17 17 C 1.36939 * 136.06063 * 38.06047 * 16 12 11 18 18 H 1.07995 * 119.99587 * 4.45496 * 17 16 12 19 19 C 1.38807 * 119.99876 * 184.44129 * 17 16 12 20 20 N 1.31617 * 120.00581 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47335 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47381 * 120.00532 * 21 19 17 24 24 H 1.48500 * 109.47329 * 240.00121 * 21 19 17 25 25 C 1.54618 * 101.76815 * 334.58485 * 5 4 3 26 26 C 1.34420 * 124.35130 * 90.02421 * 3 2 1 27 27 O 1.21280 * 124.94428 * 359.52983 * 26 3 2 28 28 H 1.09001 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47436 * 300.00373 * 1 2 3 30 30 H 1.09007 * 109.47340 * 60.00486 * 1 2 3 31 31 H 1.08996 * 109.47436 * 239.99627 * 2 1 3 32 32 H 1.09006 * 109.46621 * 119.99708 * 2 1 3 33 33 H 1.08999 * 110.24003 * 316.03925 * 4 3 2 34 34 H 1.08995 * 110.24816 * 78.03902 * 4 3 2 35 35 H 1.08994 * 109.46860 * 93.68518 * 10 9 7 36 36 H 1.08997 * 109.46804 * 213.68389 * 10 9 7 37 37 H 1.08995 * 109.46902 * 333.68664 * 10 9 7 38 38 H 1.08997 * 109.47282 * 212.92047 * 11 9 7 39 39 H 1.08996 * 109.47397 * 332.92503 * 11 9 7 40 40 H 1.09004 * 114.20344 * 254.43603 * 14 12 11 41 41 H 1.09000 * 114.20857 * 27.25699 * 14 12 11 42 42 H 1.08997 * 113.46695 * 219.15000 * 15 14 12 43 43 H 1.08997 * 113.51990 * 88.71656 * 15 14 12 44 44 H 0.97005 * 120.00362 * 179.97438 * 20 19 17 45 45 H 1.09006 * 110.48572 * 266.11986 * 25 5 4 46 46 H 1.08998 * 110.48924 * 143.47657 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 -1.2118 5 6 3.1748 3.3438 -0.7488 6 1 4.2334 3.1027 -0.8450 7 6 2.8381 4.5986 -1.5123 8 8 1.8710 4.6223 -2.2438 9 7 3.6116 5.6947 -1.3823 10 6 4.8407 5.6337 -0.5873 11 6 3.2234 6.9470 -2.0360 12 6 2.4074 7.7991 -1.0618 13 1 1.6716 7.2169 -0.5071 14 6 3.2698 8.7043 -0.1713 15 6 2.1392 9.7146 -0.4100 16 7 1.8519 9.0163 -1.6720 17 6 1.3075 9.3522 -2.8829 18 1 1.1499 8.5919 -3.6335 19 6 0.9581 10.6696 -3.1453 20 7 1.1504 11.5963 -2.2306 21 14 0.2149 11.1275 -4.7967 22 1 0.1027 9.9125 -5.6431 23 1 -1.1347 11.7109 -4.5876 24 1 1.0852 12.1233 -5.4723 25 6 2.7702 3.4752 0.7377 26 6 2.2715 2.0961 1.1098 27 8 2.1214 1.6945 2.2442 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.8320 1.5529 -1.9384 34 1 1.3637 2.5311 -1.6428 35 1 5.6845 5.4092 -1.2397 36 1 5.0049 6.5938 -0.0982 37 1 4.7470 4.8527 0.1672 38 1 4.1179 7.4932 -2.3351 39 1 2.6212 6.7255 -2.9171 40 1 3.3554 8.3650 0.8610 41 1 4.2242 8.9887 -0.6143 42 1 2.4924 10.7363 -0.5497 43 1 1.3317 9.6439 0.3187 44 1 0.9066 12.5171 -2.4142 45 1 1.9754 4.2122 0.8531 46 1 3.6335 3.7455 1.3457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085627608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:59 Heat of formation + Delta-G solvation = -1.355666 kcal Electronic energy + Delta-G solvation = -26360.264459 eV Core-core repulsion = 22673.348793 eV Total energy + Delta-G solvation = -3686.915666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08946 -39.52526 -38.05683 -36.49720 -35.33536 -34.15773 -32.17642 -30.26369 -28.50991 -27.95637 -27.89540 -26.43989 -24.21361 -23.45360 -23.05432 -21.72498 -19.71276 -19.25972 -18.95487 -17.68046 -17.00563 -16.78639 -16.05739 -15.99148 -15.42060 -15.33559 -14.67148 -14.36623 -14.06714 -13.88390 -13.85421 -13.69697 -13.38323 -13.35002 -12.83538 -12.71325 -12.54783 -12.37314 -12.22290 -11.84991 -11.73897 -11.59356 -11.51523 -11.34122 -11.13734 -10.89760 -10.75969 -10.42223 -10.18372 -9.84462 -9.80764 -9.72533 -9.47651 -8.97526 -8.78163 -8.36727 -6.86677 -5.74505 -3.08179 2.34641 2.54745 2.68025 3.05630 3.40389 3.46553 3.48865 3.96478 4.10845 4.39620 4.48167 4.59873 4.72511 4.82770 4.89248 5.00960 5.07878 5.18411 5.19533 5.30765 5.32705 5.39907 5.45458 5.47666 5.52512 5.58801 5.66786 5.68882 5.77632 5.91362 5.93660 6.14794 6.26762 6.28416 6.41745 6.48527 6.66556 6.82182 6.83071 7.24159 7.42164 7.45965 7.60223 7.92504 8.01097 8.19577 9.06072 9.72581 10.65299 11.42128 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.003178 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.210042 B = 8807.723004 C = 9363.523902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.619 5.619 4 C 0.115 3.885 5 C -0.123 4.123 6 H 0.114 0.886 7 C 0.520 3.480 8 O -0.529 6.529 9 N -0.605 5.605 10 C 0.072 3.928 11 C 0.113 3.887 12 C 0.134 3.866 13 H 0.042 0.958 14 C -0.167 4.167 15 C 0.148 3.852 16 N -0.600 5.600 17 C -0.215 4.215 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.290 1.290 25 C -0.142 4.142 26 C 0.522 3.478 27 O -0.532 6.532 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.021 0.979 44 H 0.252 0.748 45 H 0.112 0.888 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.612 -20.173 4.701 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.354 5.354 4 C -0.008 4.008 5 C -0.145 4.145 6 H 0.132 0.868 7 C 0.306 3.694 8 O -0.405 6.405 9 N -0.338 5.338 10 C -0.071 4.071 11 C -0.010 4.010 12 C 0.026 3.974 13 H 0.059 0.941 14 C -0.205 4.205 15 C 0.023 3.977 16 N -0.326 5.326 17 C -0.342 4.342 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.741 3.259 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.183 4.183 26 C 0.309 3.691 27 O -0.408 6.408 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.130 0.870 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.839 -20.203 4.624 22.159 hybrid contribution -0.506 0.390 -0.850 1.063 sum 7.334 -19.813 3.775 21.461 Atomic orbital electron populations 1.22176 0.95631 1.02353 1.02856 1.21349 0.94602 0.80823 1.03071 1.48365 1.65805 1.13942 1.07272 1.22040 1.00898 0.91033 0.86878 1.22229 1.02300 0.94498 0.95496 0.86844 1.20003 0.83070 0.84149 0.82139 1.90745 1.27941 1.83415 1.38409 1.47832 1.23792 1.11026 1.51119 1.21917 0.86156 1.03690 0.95346 1.21948 0.99947 0.82053 0.97003 1.22419 0.92872 0.89867 0.92251 0.94114 1.23744 0.98889 1.00154 0.97756 1.22082 0.91686 0.97557 0.86422 1.45650 1.71910 1.05213 1.09790 1.18977 1.33917 0.92715 0.88632 0.90135 1.24778 1.01877 0.95603 0.98137 1.69836 1.52922 1.00836 1.33087 0.86058 0.78526 0.78176 0.83120 1.20362 1.21774 1.21701 1.22350 1.04415 0.96767 0.94734 1.20761 0.76750 0.87181 0.84387 1.90728 1.53933 1.75129 1.21047 0.91402 0.92163 0.92094 0.90248 0.89996 0.89835 0.88676 0.92546 0.90288 0.91162 0.90300 0.89562 0.92812 0.90479 0.90575 0.96119 0.93767 0.87007 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.12 0.99 6.65 -4.04 -0.03 0.97 16 3 N -0.62 -6.15 2.93 -172.41 -0.51 -6.65 16 4 C 0.11 1.06 6.78 -3.12 -0.02 1.04 16 5 C -0.12 -1.13 2.48 -90.15 -0.22 -1.35 16 6 H 0.11 0.73 7.43 -51.93 -0.39 0.34 16 7 C 0.52 6.96 6.88 -10.99 -0.08 6.89 16 8 O -0.53 -9.43 15.00 5.55 0.08 -9.34 16 9 N -0.60 -7.83 2.87 -181.57 -0.52 -8.36 16 10 C 0.07 0.61 10.17 59.85 0.61 1.22 16 11 C 0.11 1.94 5.45 -4.04 -0.02 1.92 16 12 C 0.13 2.67 4.31 -72.40 -0.31 2.36 16 13 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 14 C -0.17 -2.98 7.29 -26.22 -0.19 -3.17 16 15 C 0.15 3.46 7.50 -8.51 -0.06 3.40 16 16 N -0.60 -15.25 3.65 -177.02 -0.65 -15.90 16 17 C -0.22 -6.04 10.55 -15.06 -0.16 -6.20 16 18 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -27.36 11.43 55.49 0.63 -26.72 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 C -0.14 -1.37 5.84 -26.74 -0.16 -1.53 16 26 C 0.52 6.22 8.02 -10.86 -0.09 6.14 16 27 O -0.53 -8.22 17.60 5.56 0.10 -8.12 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.70 7.93 -51.93 -0.41 0.28 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 1.09 6.87 -51.93 -0.36 0.73 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.68 7.36 -51.93 -0.38 0.30 16 37 H 0.07 0.44 4.91 -51.93 -0.26 0.19 16 38 H 0.08 1.29 7.81 -51.93 -0.41 0.89 16 39 H 0.09 1.75 7.28 -51.93 -0.38 1.37 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 42 H 0.08 1.97 6.94 -51.93 -0.36 1.61 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.11 1.23 7.89 -51.93 -0.41 0.82 16 46 H 0.11 0.84 7.07 -51.93 -0.37 0.47 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -35.36 370.84 -8.21 -43.58 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.47 Total: -1.77 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -0.45 Total: 10.35 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -1.04 Total: -57.63 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.18 Total: -17.46 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.36 -8.21 -43.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085627608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.220 kcal (2) G-P(sol) polarization free energy of solvation -35.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds