Wall clock time and date at job start Fri Apr 10 2020 18:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47004 * 2 1 4 4 C 1.46762 * 124.34889 * 90.00894 * 3 2 1 5 5 C 1.54481 * 105.47482 * 162.95867 * 4 3 2 6 6 H 1.09002 * 110.96782 * 267.25591 * 5 4 3 7 7 C 1.50699 * 110.96792 * 143.53079 * 5 4 3 8 8 O 1.21281 * 120.00466 * 337.05804 * 7 5 4 9 9 N 1.34777 * 119.99874 * 157.05330 * 7 5 4 10 10 C 1.46502 * 119.99891 * 4.33674 * 9 7 5 11 11 C 1.46506 * 120.00146 * 184.33269 * 9 7 5 12 12 C 1.53002 * 109.46877 * 264.51567 * 11 9 7 13 13 H 1.09001 * 112.73652 * 316.91398 * 12 11 9 14 14 C 1.53497 * 113.46873 * 87.73702 * 12 11 9 15 15 C 1.53248 * 83.42938 * 140.67651 * 14 12 11 16 16 N 1.47065 * 88.08097 * 334.10388 * 15 14 12 17 17 C 1.36937 * 136.05830 * 207.20185 * 16 15 14 18 18 H 1.08001 * 120.00177 * 172.48756 * 17 16 15 19 19 C 1.38813 * 119.99657 * 352.48306 * 17 16 15 20 20 N 1.31616 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47362 * 270.00331 * 21 19 17 23 23 H 1.48495 * 109.47168 * 30.00306 * 21 19 17 24 24 H 1.48496 * 109.47237 * 150.00336 * 21 19 17 25 25 C 1.54627 * 101.79882 * 25.39676 * 5 4 3 26 26 C 1.34419 * 124.35219 * 269.97630 * 3 2 1 27 27 O 1.21282 * 124.94331 * 0.44069 * 26 3 2 28 28 H 1.08999 * 109.46427 * 299.99735 * 1 2 3 29 29 H 1.09000 * 109.47453 * 59.99685 * 1 2 3 30 30 H 1.09000 * 109.47322 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46598 * 240.00113 * 2 1 3 32 32 H 1.08998 * 109.47061 * 120.00658 * 2 1 3 33 33 H 1.08997 * 110.24790 * 43.95400 * 4 3 2 34 34 H 1.08998 * 110.24290 * 281.96026 * 4 3 2 35 35 H 1.08999 * 109.47010 * 204.63099 * 10 9 7 36 36 H 1.09002 * 109.46780 * 324.62834 * 10 9 7 37 37 H 1.08994 * 109.47243 * 84.63246 * 10 9 7 38 38 H 1.08998 * 109.47181 * 144.51639 * 11 9 7 39 39 H 1.09000 * 109.46740 * 24.51006 * 11 9 7 40 40 H 1.08996 * 114.21057 * 254.43400 * 14 12 11 41 41 H 1.09001 * 114.20332 * 27.06480 * 14 12 11 42 42 H 1.08996 * 113.38193 * 219.29785 * 15 14 12 43 43 H 1.09000 * 113.46648 * 88.93047 * 15 14 12 44 44 H 0.97003 * 120.00265 * 179.97438 * 20 19 17 45 45 H 1.09000 * 110.48747 * 93.90118 * 25 5 4 46 46 H 1.09000 * 110.48695 * 216.54279 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2945 2.1618 1.2117 5 6 3.1750 3.3437 0.7488 6 1 4.2337 3.1028 0.8456 7 6 2.8383 4.5985 1.5123 8 8 1.7502 4.7170 2.0348 9 7 3.7463 5.5892 1.6147 10 6 5.0242 5.4878 0.9054 11 6 3.4556 6.7675 2.4353 12 6 2.8961 7.8814 1.5481 13 1 3.4385 7.9837 0.6081 14 6 1.3727 7.8160 1.3724 15 6 1.4711 9.3413 1.4828 16 7 2.7075 9.1560 2.2572 17 6 3.3829 9.8582 3.2194 18 1 4.2350 9.4150 3.7133 19 6 2.9723 11.1398 3.5599 20 7 1.9337 11.6797 2.9583 21 14 3.8931 12.0975 4.8730 22 1 3.2913 11.8197 6.2019 23 1 5.3192 11.6835 4.8792 24 1 3.8009 13.5507 4.5820 25 6 2.7712 3.4755 -0.7380 26 6 2.2716 2.0961 -1.1097 27 8 2.1219 1.6943 -2.2442 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.8322 1.5528 1.9384 34 1 1.3639 2.5309 1.6428 35 1 5.7708 6.0987 1.4127 36 1 5.3519 4.4482 0.8942 37 1 4.9005 5.8409 -0.1183 38 1 4.3719 7.1111 2.9154 39 1 2.7214 6.5071 3.1978 40 1 1.0504 7.4564 0.3952 41 1 0.8473 7.3411 2.2010 42 1 0.6604 9.7864 2.0595 43 1 1.6290 9.8365 0.5247 44 1 1.6466 12.5752 3.1964 45 1 1.9768 4.2129 -0.8536 46 1 3.6350 3.7456 -1.3454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085627610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:03 Heat of formation + Delta-G solvation = -24.060230 kcal Electronic energy + Delta-G solvation = -26307.307089 eV Core-core repulsion = 22619.406879 eV Total energy + Delta-G solvation = -3687.900210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94727 -40.66698 -39.58286 -37.42842 -36.44957 -34.88766 -34.24267 -31.10320 -29.92711 -29.67351 -28.69976 -27.37390 -25.44067 -25.10584 -24.03750 -22.97802 -21.02828 -20.47895 -19.94713 -18.83304 -18.41648 -17.81656 -17.20518 -16.98085 -16.73714 -16.38109 -16.12862 -15.79019 -15.40062 -14.94354 -14.83402 -14.60659 -14.39613 -14.27698 -14.00301 -13.86681 -13.68231 -13.41798 -13.24983 -13.06225 -12.96158 -12.91573 -12.67796 -12.51273 -12.44483 -12.27128 -12.16494 -11.98644 -11.82283 -11.64815 -11.16718 -11.07907 -10.84967 -10.66480 -9.76828 -9.57004 -8.89010 -7.89632 -5.23001 1.45469 1.46482 1.49087 1.57119 1.58505 1.86559 2.12686 2.49837 3.15221 3.32582 3.42292 3.44974 3.68209 3.87642 3.89266 4.01662 4.13439 4.25803 4.26692 4.37796 4.44574 4.46777 4.47471 4.55706 4.60534 4.71667 4.73948 4.79899 4.83646 4.88852 4.93661 4.96148 5.03568 5.06989 5.11800 5.22423 5.26100 5.47710 5.53559 5.56022 5.74090 5.93145 6.04345 6.47815 6.90602 7.07798 7.20611 7.61880 8.63698 9.29714 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.029351 B = 0.002841 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.747553 B = 9853.351043 C = 9997.191206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.614 5.614 4 C 0.115 3.885 5 C -0.109 4.109 6 H 0.151 0.849 7 C 0.521 3.479 8 O -0.568 6.568 9 N -0.604 5.604 10 C 0.066 3.934 11 C 0.130 3.870 12 C 0.138 3.862 13 H 0.053 0.947 14 C -0.132 4.132 15 C 0.152 3.848 16 N -0.629 5.629 17 C -0.221 4.221 18 H 0.093 0.907 19 C -0.073 4.073 20 N -0.958 5.958 21 Si 0.979 3.021 22 H -0.288 1.288 23 H -0.262 1.262 24 H -0.298 1.298 25 C -0.134 4.134 26 C 0.514 3.486 27 O -0.576 6.576 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.026 0.974 43 H 0.017 0.983 44 H 0.247 0.753 45 H 0.097 0.903 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -24.311 -4.418 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.347 5.347 4 C -0.008 4.008 5 C -0.130 4.130 6 H 0.169 0.831 7 C 0.308 3.692 8 O -0.447 6.447 9 N -0.335 5.335 10 C -0.076 4.076 11 C 0.006 3.994 12 C 0.031 3.969 13 H 0.070 0.930 14 C -0.170 4.170 15 C 0.026 3.974 16 N -0.355 5.355 17 C -0.349 4.349 18 H 0.111 0.889 19 C -0.265 4.265 20 N -0.607 5.607 21 Si 0.807 3.193 22 H -0.215 1.215 23 H -0.186 1.186 24 H -0.225 1.225 25 C -0.175 4.175 26 C 0.303 3.697 27 O -0.457 6.457 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.056 0.944 45 H 0.115 0.885 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.930 -24.272 -4.491 25.386 hybrid contribution -0.128 1.439 0.490 1.525 sum 5.802 -22.833 -4.001 23.896 Atomic orbital electron populations 1.22144 0.95875 1.03255 1.01357 1.21558 0.94403 0.80131 1.04321 1.48484 1.64729 1.14463 1.07006 1.22118 1.00308 0.91406 0.86982 1.22259 1.04359 0.92248 0.94183 0.83115 1.20538 0.83621 0.84807 0.80187 1.90727 1.23736 1.81144 1.49118 1.47867 1.18583 1.18424 1.48667 1.22193 0.83342 1.04790 0.97242 1.21471 1.00839 0.84167 0.92967 1.22509 0.94420 0.85939 0.94054 0.92984 1.23336 0.96837 0.95993 1.00862 1.21855 0.89312 0.93325 0.92897 1.45946 1.26000 1.21608 1.41952 1.19341 1.09659 0.95514 1.10408 0.88911 1.25725 0.99891 0.98070 1.02839 1.70055 1.28731 1.15727 1.46211 0.85063 0.78711 0.77225 0.78260 1.21461 1.18628 1.22511 1.22277 1.04796 0.95007 0.95400 1.21142 0.76401 0.88006 0.84140 1.90703 1.56058 1.76114 1.22780 0.92339 0.94761 0.89391 0.90607 0.87102 0.86725 0.90770 0.90314 0.87648 0.91419 0.90494 0.91749 0.90899 0.91176 0.95552 0.96526 0.94444 0.88465 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.24 71.98 0.74 -1.67 16 2 C 0.12 1.55 6.65 86.38 0.57 2.13 16 3 N -0.61 -10.35 2.93 -817.91 -2.40 -12.75 16 4 C 0.11 1.64 6.85 86.83 0.59 2.23 16 5 C -0.11 -1.52 2.80 -10.48 -0.03 -1.55 16 6 H 0.15 0.97 6.22 -2.39 -0.01 0.95 16 7 C 0.52 11.88 6.78 87.66 0.59 12.48 16 8 O -0.57 -18.14 15.04 -3.03 -0.05 -18.18 16 9 N -0.60 -13.66 2.87 -846.74 -2.43 -16.09 16 10 C 0.07 0.87 10.26 127.77 1.31 2.18 16 11 C 0.13 4.21 5.42 86.38 0.47 4.67 16 12 C 0.14 5.38 4.32 41.80 0.18 5.56 16 13 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 14 C -0.13 -5.33 7.86 30.84 0.24 -5.09 16 15 C 0.15 7.61 7.23 83.10 0.60 8.21 16 16 N -0.63 -32.13 3.64 -714.33 -2.60 -34.74 16 17 C -0.22 -12.14 10.55 84.03 0.89 -11.25 16 18 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 19 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 20 N -0.96 -59.22 11.71 21.65 0.25 -58.97 16 21 Si 0.98 45.43 29.55 68.60 2.03 47.45 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 25 C -0.13 -2.21 6.41 30.61 0.20 -2.01 16 26 C 0.51 11.23 8.02 87.92 0.71 11.93 16 27 O -0.58 -17.35 17.60 -3.04 -0.05 -17.41 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.13 7.93 -2.38 -0.02 1.11 16 32 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.44 6.88 -2.39 -0.02 1.43 16 35 H 0.08 1.07 7.89 -2.39 -0.02 1.05 16 36 H 0.11 0.61 6.04 -2.39 -0.01 0.60 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 2.45 7.95 -2.39 -0.02 2.43 16 39 H 0.06 2.42 7.04 -2.39 -0.02 2.40 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.07 3.00 7.92 -2.39 -0.02 2.98 16 42 H 0.03 1.48 7.47 -2.39 -0.02 1.46 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.10 1.94 7.89 -2.39 -0.02 1.92 16 46 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -79.27 374.34 3.23 -76.04 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.96 Total: 10.50 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 7.53 Total: 24.16 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -7.18 Total: -122.55 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.10 Total: -35.59 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -79.27 3.23 -76.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085627610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.976 kcal (2) G-P(sol) polarization free energy of solvation -79.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds