Wall clock time and date at job start Fri Apr 10 2020 18:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 120.00107 * 2 1 4 4 N 1.34780 * 120.00121 * 179.97438 * 2 1 3 5 5 C 1.47018 * 125.64286 * 359.69252 * 4 2 1 6 6 C 1.54327 * 107.26906 * 179.20779 * 5 4 2 7 7 C 1.55157 * 102.94244 * 337.80515 * 6 5 4 8 8 H 1.08998 * 111.00572 * 277.43159 * 7 6 5 9 9 C 1.50700 * 111.03675 * 153.58904 * 7 6 5 10 10 O 1.21283 * 120.00272 * 6.33672 * 9 7 6 11 11 N 1.34782 * 119.99935 * 186.33107 * 9 7 6 12 12 C 1.46504 * 119.99876 * 354.95875 * 11 9 7 13 13 C 1.46496 * 119.99686 * 174.95720 * 11 9 7 14 14 C 1.53000 * 109.47265 * 94.16635 * 13 11 9 15 15 H 1.08997 * 112.96275 * 294.47520 * 14 13 11 16 16 C 1.53952 * 113.76811 * 66.14540 * 14 13 11 17 17 C 1.53954 * 86.28795 * 137.91062 * 16 14 13 18 18 N 1.47575 * 113.77110 * 162.63963 * 14 13 11 19 19 C 1.36946 * 134.49215 * 41.05922 * 18 14 13 20 20 H 1.08001 * 119.99932 * 354.81308 * 19 18 14 21 21 C 1.38811 * 119.99779 * 174.80982 * 19 18 14 22 22 N 1.31609 * 120.00236 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99429 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47404 * 60.00114 * 23 21 19 25 25 H 1.48503 * 109.46874 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47546 * 299.99673 * 23 21 19 27 27 C 1.47425 * 125.64979 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.47565 * 270.00687 * 1 2 3 29 29 H 1.09009 * 109.47068 * 30.00367 * 1 2 3 30 30 H 1.08992 * 109.47048 * 149.99873 * 1 2 3 31 31 H 1.08998 * 109.88405 * 298.61979 * 5 4 2 32 32 H 1.08996 * 109.88300 * 59.79185 * 5 4 2 33 33 H 1.09002 * 110.71838 * 219.44726 * 6 5 4 34 34 H 1.08993 * 110.87451 * 96.24376 * 6 5 4 35 35 H 1.08999 * 109.46869 * 90.00051 * 12 11 9 36 36 H 1.08992 * 109.46758 * 209.99537 * 12 11 9 37 37 H 1.08997 * 109.47294 * 329.99601 * 12 11 9 38 38 H 1.09006 * 109.47002 * 214.16358 * 13 11 9 39 39 H 1.08990 * 109.47529 * 334.16171 * 13 11 9 40 40 H 1.08999 * 113.74329 * 252.25308 * 16 14 13 41 41 H 1.08995 * 113.74005 * 23.56766 * 16 14 13 42 42 H 1.08998 * 113.76885 * 90.69646 * 17 16 14 43 43 H 1.08999 * 113.76532 * 222.09339 * 17 16 14 44 44 H 0.97005 * 120.00132 * 179.97438 * 22 21 19 45 45 H 1.08999 * 110.36580 * 322.70383 * 27 4 2 46 46 H 1.09004 * 110.36606 * 85.02519 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5746 -2.5065 0.0075 6 6 2.7280 -3.5317 -0.0150 7 6 3.9078 -2.7145 -0.6046 8 1 3.8577 -2.6855 -1.6930 9 6 5.2320 -3.2654 -0.1420 10 8 5.2700 -4.2935 0.5003 11 7 6.3741 -2.6158 -0.4423 12 6 6.3393 -1.4361 -1.3103 13 6 7.6502 -3.0893 0.0995 14 6 8.3208 -4.0192 -0.9137 15 1 7.7623 -4.9403 -1.0802 16 6 8.7543 -3.3134 -2.2115 17 6 10.0489 -4.1405 -2.1105 18 7 9.7602 -4.2298 -0.6660 19 6 10.5223 -4.4284 0.4544 20 1 10.0692 -4.3696 1.4330 21 6 11.8769 -4.7055 0.3322 22 7 12.4289 -4.7778 -0.8603 23 14 12.9161 -4.9771 1.8606 24 1 12.3810 -6.1329 2.6241 25 1 14.3197 -5.2536 1.4620 26 1 12.8741 -3.7601 2.7106 27 6 3.6480 -1.3123 0.0011 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 0.9786 -2.6390 0.9105 32 1 0.9478 -2.6343 -0.8750 33 1 2.4821 -4.3747 -0.6608 34 1 2.9621 -3.8750 0.9926 35 1 6.2046 -0.5415 -0.7023 36 1 7.2767 -1.3630 -1.8616 37 1 5.5107 -1.5262 -2.0128 38 1 8.3003 -2.2367 0.2959 39 1 7.4719 -3.6317 1.0279 40 1 8.1387 -3.5656 -3.0749 41 1 8.9089 -2.2406 -2.0969 42 1 9.9998 -5.0983 -2.6285 43 1 10.9508 -3.5749 -2.3442 44 1 13.3757 -4.9710 -0.9457 45 1 4.1057 -0.5408 -0.6180 46 1 4.0338 -1.2612 1.0193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085948062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:15 Heat of formation + Delta-G solvation = -5.089622 kcal Electronic energy + Delta-G solvation = -26185.867730 eV Core-core repulsion = 22498.790147 eV Total energy + Delta-G solvation = -3687.077583 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77115 -39.57888 -38.02540 -37.15213 -35.25686 -32.56500 -32.09409 -30.19862 -29.67976 -28.13755 -27.80095 -26.42838 -24.19719 -23.35827 -22.94685 -21.47510 -19.79324 -19.17736 -18.88646 -17.54405 -17.34254 -16.64397 -16.21578 -15.89529 -15.72329 -15.22384 -14.84024 -14.46272 -14.23827 -13.91255 -13.61196 -13.46699 -13.20284 -13.13214 -12.91224 -12.74613 -12.56375 -12.36603 -12.35765 -12.05688 -11.90796 -11.53000 -11.35022 -11.20046 -11.02001 -10.89483 -10.69315 -10.45539 -10.25912 -9.86745 -9.80031 -9.65576 -9.46009 -9.04431 -8.77308 -8.37598 -6.84592 -5.74276 -3.06080 2.29015 2.48886 2.72085 3.10783 3.42045 3.46433 3.47408 3.96902 4.12224 4.45860 4.47956 4.52062 4.71837 4.80739 4.87190 4.92070 5.00572 5.08751 5.15961 5.24030 5.33900 5.37113 5.41761 5.48865 5.51801 5.54646 5.63346 5.73139 5.78473 5.82881 5.92067 5.97126 6.18581 6.28299 6.41569 6.58470 6.70875 6.83160 7.13016 7.27186 7.42381 7.52998 7.60186 7.80437 8.01388 8.24572 9.08133 9.74248 10.63953 11.43359 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.027415 B = 0.002758 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.091088 B =10149.427934 C =10253.692370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.526 3.474 3 O -0.546 6.546 4 N -0.621 5.621 5 C 0.099 3.901 6 C -0.112 4.112 7 C -0.124 4.124 8 H 0.111 0.889 9 C 0.521 3.479 10 O -0.533 6.533 11 N -0.603 5.603 12 C 0.070 3.930 13 C 0.117 3.883 14 C 0.131 3.869 15 H 0.046 0.954 16 C -0.162 4.162 17 C 0.165 3.835 18 N -0.602 5.602 19 C -0.223 4.223 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.116 3.884 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.067 0.933 44 H 0.254 0.746 45 H 0.089 0.911 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.409 7.481 -2.755 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.315 3.685 3 O -0.423 6.423 4 N -0.356 5.356 5 C -0.023 4.023 6 C -0.151 4.151 7 C -0.146 4.146 8 H 0.129 0.871 9 C 0.307 3.693 10 O -0.409 6.409 11 N -0.335 5.335 12 C -0.073 4.073 13 C -0.007 4.007 14 C 0.023 3.977 15 H 0.063 0.937 16 C -0.200 4.200 17 C 0.040 3.960 18 N -0.328 5.328 19 C -0.351 4.351 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C -0.007 4.007 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.781 7.514 -2.237 25.040 hybrid contribution 0.669 -0.426 0.708 1.064 sum -23.112 7.088 -1.528 24.222 Atomic orbital electron populations 1.21885 0.91236 1.04911 1.04823 1.20529 0.90427 0.81914 0.75588 1.90746 1.70781 1.30621 1.50142 1.48597 1.07239 1.06096 1.73699 1.22156 0.96624 0.81461 1.02103 1.22544 0.91801 0.96898 1.03810 1.22513 0.93737 0.95936 1.02392 0.87122 1.20075 0.84900 0.84203 0.80123 1.90728 1.86939 1.23170 1.40061 1.47814 1.07279 1.29201 1.49255 1.22026 1.03860 0.87321 0.94088 1.21803 0.82077 0.98942 0.97836 1.22495 0.87841 0.95007 0.92384 0.93697 1.23845 0.99893 0.99704 0.96538 1.22111 0.94429 0.95212 0.84278 1.46072 0.99723 1.84504 1.02550 1.18979 0.89882 1.41414 0.84797 0.90374 1.24787 0.96866 1.01962 0.96734 1.69816 1.11397 1.54915 1.20737 0.86240 0.79485 0.78151 0.82136 1.21174 1.21605 1.21087 1.22226 0.80971 0.95768 1.01746 0.88782 0.88801 0.90106 0.90824 0.90875 0.89152 0.88944 0.92516 0.89804 0.91435 0.89994 0.90264 0.93313 0.90837 0.95568 0.91464 0.93639 0.89255 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 9.90 36.00 0.36 -0.55 16 2 C 0.53 5.20 7.96 -10.99 -0.09 5.11 16 3 O -0.55 -7.83 17.36 5.56 0.10 -7.73 16 4 N -0.62 -5.47 3.33 -170.51 -0.57 -6.04 16 5 C 0.10 0.60 6.16 -3.06 -0.02 0.58 16 6 C -0.11 -0.91 6.03 -24.89 -0.15 -1.06 16 7 C -0.12 -1.18 2.45 -89.61 -0.22 -1.40 16 8 H 0.11 0.88 7.43 -51.93 -0.39 0.50 16 9 C 0.52 7.27 7.04 -10.98 -0.08 7.19 16 10 O -0.53 -9.58 15.36 5.55 0.09 -9.49 16 11 N -0.60 -8.41 2.84 -181.58 -0.52 -8.93 16 12 C 0.07 0.73 8.67 59.85 0.52 1.25 16 13 C 0.12 2.09 5.40 -4.04 -0.02 2.06 16 14 C 0.13 2.70 4.58 -66.86 -0.31 2.39 16 15 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 16 C -0.16 -2.96 6.68 -25.80 -0.17 -3.13 16 17 C 0.16 3.91 7.39 -2.97 -0.02 3.88 16 18 N -0.60 -15.45 3.57 -170.74 -0.61 -16.06 16 19 C -0.22 -6.29 10.51 -15.06 -0.16 -6.45 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.20 5.50 -17.44 -0.10 -0.30 16 22 N -0.92 -27.61 11.52 55.49 0.64 -26.97 16 23 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.12 1.13 5.55 -2.52 -0.01 1.12 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.08 0.27 7.07 -51.93 -0.37 -0.10 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.30 7.77 -51.93 -0.40 -0.10 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.91 7.49 -51.93 -0.39 0.52 16 35 H 0.06 0.53 7.47 -51.93 -0.39 0.14 16 36 H 0.08 0.90 5.58 -51.93 -0.29 0.61 16 37 H 0.07 0.55 6.31 -51.93 -0.33 0.22 16 38 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 39 H 0.08 1.58 7.37 -51.93 -0.38 1.20 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.25 6.65 -51.93 -0.35 0.90 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.73 7.40 -51.93 -0.38 1.34 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.09 0.88 6.34 -51.93 -0.33 0.55 16 46 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -35.89 364.81 -8.20 -44.09 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.33 Total: -2.50 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -0.47 Total: 10.70 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -1.05 Total: -57.99 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.18 Total: -17.23 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.89 -8.20 -44.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085948062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.997 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds