Wall clock time and date at job start Fri Apr 10 2020 18:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 120.00107 * 2 1 4 4 N 1.34780 * 120.00121 * 179.97438 * 2 1 3 5 5 C 1.47018 * 125.64286 * 359.69252 * 4 2 1 6 6 C 1.54327 * 107.26906 * 179.20779 * 5 4 2 7 7 C 1.55157 * 102.94244 * 337.80515 * 6 5 4 8 8 H 1.08998 * 111.00572 * 277.43159 * 7 6 5 9 9 C 1.50700 * 111.03675 * 153.58904 * 7 6 5 10 10 O 1.21283 * 120.00272 * 6.33672 * 9 7 6 11 11 N 1.34782 * 119.99935 * 186.33107 * 9 7 6 12 12 C 1.46504 * 119.99876 * 354.95875 * 11 9 7 13 13 C 1.46496 * 119.99686 * 174.95720 * 11 9 7 14 14 C 1.53000 * 109.47265 * 94.16635 * 13 11 9 15 15 H 1.08997 * 112.96275 * 294.47520 * 14 13 11 16 16 C 1.53952 * 113.76811 * 66.14540 * 14 13 11 17 17 C 1.53954 * 86.28795 * 137.91062 * 16 14 13 18 18 N 1.47575 * 113.77110 * 162.63963 * 14 13 11 19 19 C 1.36946 * 134.49215 * 41.05922 * 18 14 13 20 20 H 1.08001 * 119.99932 * 354.81308 * 19 18 14 21 21 C 1.38811 * 119.99779 * 174.80982 * 19 18 14 22 22 N 1.31609 * 120.00236 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99429 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47404 * 60.00114 * 23 21 19 25 25 H 1.48503 * 109.46874 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47546 * 299.99673 * 23 21 19 27 27 C 1.47425 * 125.64979 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.47565 * 270.00687 * 1 2 3 29 29 H 1.09009 * 109.47068 * 30.00367 * 1 2 3 30 30 H 1.08992 * 109.47048 * 149.99873 * 1 2 3 31 31 H 1.08998 * 109.88405 * 298.61979 * 5 4 2 32 32 H 1.08996 * 109.88300 * 59.79185 * 5 4 2 33 33 H 1.09002 * 110.71838 * 219.44726 * 6 5 4 34 34 H 1.08993 * 110.87451 * 96.24376 * 6 5 4 35 35 H 1.08999 * 109.46869 * 90.00051 * 12 11 9 36 36 H 1.08992 * 109.46758 * 209.99537 * 12 11 9 37 37 H 1.08997 * 109.47294 * 329.99601 * 12 11 9 38 38 H 1.09006 * 109.47002 * 214.16358 * 13 11 9 39 39 H 1.08990 * 109.47529 * 334.16171 * 13 11 9 40 40 H 1.08999 * 113.74329 * 252.25308 * 16 14 13 41 41 H 1.08995 * 113.74005 * 23.56766 * 16 14 13 42 42 H 1.08998 * 113.76885 * 90.69646 * 17 16 14 43 43 H 1.08999 * 113.76532 * 222.09339 * 17 16 14 44 44 H 0.97005 * 120.00132 * 179.97438 * 22 21 19 45 45 H 1.08999 * 110.36580 * 322.70383 * 27 4 2 46 46 H 1.09004 * 110.36606 * 85.02519 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5746 -2.5065 0.0075 6 6 2.7280 -3.5317 -0.0150 7 6 3.9078 -2.7145 -0.6046 8 1 3.8577 -2.6855 -1.6930 9 6 5.2320 -3.2654 -0.1420 10 8 5.2700 -4.2935 0.5003 11 7 6.3741 -2.6158 -0.4423 12 6 6.3393 -1.4361 -1.3103 13 6 7.6502 -3.0893 0.0995 14 6 8.3208 -4.0192 -0.9137 15 1 7.7623 -4.9403 -1.0802 16 6 8.7543 -3.3134 -2.2115 17 6 10.0489 -4.1405 -2.1105 18 7 9.7602 -4.2298 -0.6660 19 6 10.5223 -4.4284 0.4544 20 1 10.0692 -4.3696 1.4330 21 6 11.8769 -4.7055 0.3322 22 7 12.4289 -4.7778 -0.8603 23 14 12.9161 -4.9771 1.8606 24 1 12.3810 -6.1329 2.6241 25 1 14.3197 -5.2536 1.4620 26 1 12.8741 -3.7601 2.7106 27 6 3.6480 -1.3123 0.0011 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 0.9786 -2.6390 0.9105 32 1 0.9478 -2.6343 -0.8750 33 1 2.4821 -4.3747 -0.6608 34 1 2.9621 -3.8750 0.9926 35 1 6.2046 -0.5415 -0.7023 36 1 7.2767 -1.3630 -1.8616 37 1 5.5107 -1.5262 -2.0128 38 1 8.3003 -2.2367 0.2959 39 1 7.4719 -3.6317 1.0279 40 1 8.1387 -3.5656 -3.0749 41 1 8.9089 -2.2406 -2.0969 42 1 9.9998 -5.0983 -2.6285 43 1 10.9508 -3.5749 -2.3442 44 1 13.3757 -4.9710 -0.9457 45 1 4.1057 -0.5408 -0.6180 46 1 4.0338 -1.2612 1.0193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085948062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:13 Heat of formation + Delta-G solvation = -30.069695 kcal Electronic energy + Delta-G solvation = -26186.950947 eV Core-core repulsion = 22498.790147 eV Total energy + Delta-G solvation = -3688.160800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.68612 -40.58996 -39.59486 -38.06861 -36.51475 -34.25862 -33.29263 -30.85320 -30.55995 -29.87492 -29.09032 -27.50185 -25.33959 -25.09278 -24.12026 -22.54230 -20.98910 -20.47006 -19.90762 -18.80317 -18.23456 -18.05325 -17.40192 -16.99493 -16.89723 -16.42631 -16.19120 -15.82736 -15.51761 -15.14990 -14.69686 -14.51359 -14.21723 -14.04846 -13.89255 -13.85065 -13.62404 -13.41189 -13.25291 -13.21859 -12.95510 -12.87355 -12.63965 -12.57726 -12.37419 -12.30697 -12.20185 -11.84311 -11.83030 -11.56887 -11.29795 -11.07768 -10.87170 -10.78642 -9.73973 -9.67156 -8.90998 -7.92239 -5.24948 1.42629 1.45954 1.49599 1.51969 1.60351 1.83219 2.10774 2.47861 3.26800 3.28076 3.34771 3.46151 3.71735 3.86275 3.89100 4.03353 4.18595 4.23040 4.26448 4.27243 4.33745 4.50795 4.53367 4.54923 4.65263 4.66842 4.74856 4.78219 4.83593 4.89829 4.96837 4.99918 5.02383 5.05496 5.11523 5.14927 5.20297 5.26899 5.44314 5.55164 5.71588 5.93989 6.40785 6.48641 6.92041 7.10771 7.12576 7.60158 8.56398 9.25077 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.027415 B = 0.002758 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.091088 B =10149.427934 C =10253.692370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.518 3.482 3 O -0.600 6.600 4 N -0.620 5.620 5 C 0.103 3.897 6 C -0.112 4.112 7 C -0.111 4.111 8 H 0.139 0.861 9 C 0.517 3.483 10 O -0.580 6.580 11 N -0.602 5.602 12 C 0.065 3.935 13 C 0.133 3.867 14 C 0.132 3.868 15 H 0.028 0.972 16 C -0.123 4.123 17 C 0.155 3.845 18 N -0.631 5.631 19 C -0.233 4.233 20 H 0.078 0.922 21 C -0.066 4.066 22 N -0.953 5.953 23 Si 0.975 3.025 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.274 1.274 27 C 0.116 3.884 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.011 0.989 43 H 0.041 0.959 44 H 0.249 0.751 45 H 0.090 0.910 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.327 8.346 -3.499 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.310 3.690 3 O -0.482 6.482 4 N -0.354 5.354 5 C -0.019 4.019 6 C -0.151 4.151 7 C -0.132 4.132 8 H 0.156 0.844 9 C 0.305 3.695 10 O -0.459 6.459 11 N -0.334 5.334 12 C -0.076 4.076 13 C 0.009 3.991 14 C 0.025 3.975 15 H 0.046 0.954 16 C -0.161 4.161 17 C 0.030 3.970 18 N -0.357 5.357 19 C -0.361 4.361 20 H 0.096 0.904 21 C -0.259 4.259 22 N -0.602 5.602 23 Si 0.803 3.197 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.200 1.200 27 C -0.007 4.007 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.028 0.972 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.108 0.892 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.761 8.385 -2.994 28.204 hybrid contribution 1.526 -0.737 0.949 1.942 sum -25.235 7.648 -2.045 26.448 Atomic orbital electron populations 1.21917 0.87511 1.06415 1.06150 1.21382 0.92145 0.81162 0.74313 1.90720 1.72150 1.32541 1.52782 1.48706 1.06762 1.07104 1.72849 1.22331 0.95928 0.79042 1.04574 1.22564 0.91918 0.97876 1.02693 1.22469 0.91293 0.95692 1.03780 0.84355 1.20874 0.86163 0.83425 0.79032 1.90709 1.87704 1.25441 1.42069 1.47855 1.05822 1.30098 1.49583 1.22277 1.05141 0.86046 0.94178 1.21308 0.83884 0.97916 0.96041 1.22576 0.85472 0.95101 0.94398 0.95409 1.23588 0.96396 0.99737 0.96374 1.22110 0.96141 0.95227 0.83515 1.46489 1.02145 1.84403 1.02697 1.19319 0.90545 1.40337 0.85915 0.90449 1.25600 0.98116 1.02544 0.99598 1.69994 1.11213 1.56367 1.22618 0.85215 0.77436 0.78263 0.78824 1.20827 1.21813 1.19966 1.22100 0.82165 0.95792 1.00666 0.87378 0.88659 0.87254 0.89139 0.87588 0.87636 0.91313 0.91411 0.89762 0.88428 0.90104 0.93102 0.89741 0.88819 0.97157 0.94073 0.94230 0.89171 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.90 71.23 0.71 -0.47 16 2 C 0.52 9.12 7.96 87.66 0.70 9.81 16 3 O -0.60 -16.78 17.36 -3.03 -0.05 -16.84 16 4 N -0.62 -9.26 3.33 -811.76 -2.70 -11.96 16 5 C 0.10 0.85 6.16 86.73 0.53 1.39 16 6 C -0.11 -1.54 6.03 31.78 0.19 -1.35 16 7 C -0.11 -1.85 2.45 -10.14 -0.02 -1.87 16 8 H 0.14 1.61 7.43 -2.39 -0.02 1.59 16 9 C 0.52 13.97 7.04 87.66 0.62 14.59 16 10 O -0.58 -21.17 15.36 -3.04 -0.05 -21.22 16 11 N -0.60 -16.10 2.84 -846.77 -2.41 -18.50 16 12 C 0.07 1.17 8.67 127.77 1.11 2.28 16 13 C 0.13 4.79 5.40 86.38 0.47 5.26 16 14 C 0.13 5.44 4.58 45.10 0.21 5.64 16 15 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 16 C -0.12 -4.31 6.68 31.26 0.21 -4.11 16 17 C 0.16 7.49 7.39 86.48 0.64 8.12 16 18 N -0.63 -33.07 3.57 -694.10 -2.48 -35.55 16 19 C -0.23 -13.43 10.51 84.03 0.88 -12.55 16 20 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 21 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 22 N -0.95 -58.72 11.52 21.65 0.25 -58.47 16 23 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 24 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 27 C 0.12 2.07 5.55 86.86 0.48 2.55 16 28 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.11 0.17 7.07 -2.39 -0.02 0.16 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.29 7.77 -2.39 -0.02 0.27 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.30 7.49 -2.39 -0.02 1.28 16 35 H 0.07 1.11 7.47 -2.39 -0.02 1.09 16 36 H 0.08 1.54 5.58 -2.39 -0.01 1.52 16 37 H 0.10 1.19 6.31 -2.39 -0.02 1.18 16 38 H 0.08 2.92 8.10 -2.38 -0.02 2.90 16 39 H 0.05 2.11 7.37 -2.39 -0.02 2.09 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.09 2.94 6.65 -2.39 -0.02 2.93 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.04 2.17 7.40 -2.39 -0.02 2.16 16 44 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 45 H 0.09 1.60 6.34 -2.39 -0.02 1.58 16 46 H 0.05 1.16 8.03 -2.38 -0.02 1.14 16 Total: -1.00 -82.88 364.81 2.74 -80.14 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.97 Total: 7.38 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 7.18 Total: 25.93 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -7.33 Total: -124.49 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.10 Total: -38.06 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -82.88 2.74 -80.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085948062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.069 kcal (2) G-P(sol) polarization free energy of solvation -82.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds