Wall clock time and date at job start Fri Apr 10 2020 18:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21281 * 120.00134 * 2 1 4 4 N 1.34780 * 119.99748 * 179.72385 * 2 1 3 5 5 C 1.47022 * 125.64513 * 359.69306 * 4 2 1 6 6 C 1.54343 * 107.26213 * 178.85066 * 5 4 2 7 7 C 1.55150 * 103.02019 * 338.13976 * 6 5 4 8 8 H 1.09004 * 111.00603 * 277.23485 * 7 6 5 9 9 C 1.50703 * 111.00590 * 153.38193 * 7 6 5 10 10 O 1.21279 * 119.99522 * 6.35017 * 9 7 6 11 11 N 1.34777 * 120.00301 * 186.34902 * 9 7 6 12 12 C 1.46496 * 119.99695 * 0.02562 * 11 9 7 13 13 C 1.46499 * 120.00137 * 179.97438 * 11 9 7 14 14 C 1.52996 * 109.46930 * 95.73665 * 13 11 9 15 15 H 1.09006 * 112.96236 * 66.82935 * 14 13 11 16 16 C 1.53940 * 113.77260 * 295.14379 * 14 13 11 17 17 C 1.53951 * 86.28898 * 222.08913 * 16 14 13 18 18 N 1.47579 * 113.76879 * 198.49868 * 14 13 11 19 19 C 1.36936 * 134.49401 * 318.93831 * 18 14 13 20 20 H 1.08001 * 120.00090 * 2.31778 * 19 18 14 21 21 C 1.38816 * 120.00193 * 182.31898 * 19 18 14 22 22 N 1.31620 * 119.99522 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00104 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47032 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47249 * 120.00059 * 23 21 19 26 26 H 1.48506 * 109.46868 * 239.99873 * 23 21 19 27 27 C 1.47420 * 125.64726 * 179.97438 * 4 2 1 28 28 H 1.08999 * 109.47373 * 240.28090 * 1 2 3 29 29 H 1.09004 * 109.46974 * 0.27779 * 1 2 3 30 30 H 1.08997 * 109.47307 * 120.27286 * 1 2 3 31 31 H 1.09001 * 109.88243 * 298.38966 * 5 4 2 32 32 H 1.08992 * 109.88519 * 59.56009 * 5 4 2 33 33 H 1.09002 * 110.84903 * 219.66900 * 6 5 4 34 34 H 1.09002 * 110.51427 * 96.44977 * 6 5 4 35 35 H 1.09003 * 109.47455 * 84.40487 * 12 11 9 36 36 H 1.09007 * 109.47254 * 204.39937 * 12 11 9 37 37 H 1.08995 * 109.47583 * 324.40084 * 12 11 9 38 38 H 1.08997 * 109.47031 * 215.73978 * 13 11 9 39 39 H 1.08997 * 109.46660 * 335.74008 * 13 11 9 40 40 H 1.08996 * 113.74482 * 336.43858 * 16 14 13 41 41 H 1.09000 * 113.74012 * 107.74865 * 16 14 13 42 42 H 1.09004 * 113.76584 * 137.90727 * 17 16 14 43 43 H 1.08995 * 113.77285 * 269.18797 * 17 16 14 44 44 H 0.97006 * 119.99154 * 179.97438 * 22 21 19 45 45 H 1.08995 * 110.37317 * 322.93097 * 27 4 2 46 46 H 1.09003 * 110.36581 * 85.25252 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0056 5 6 1.5745 -2.5065 0.0185 6 6 2.7279 -3.5318 -0.0087 7 6 3.9079 -2.7148 -0.5981 8 1 3.8582 -2.6863 -1.6867 9 6 5.2316 -3.2660 -0.1342 10 8 5.2686 -4.2939 0.5084 11 7 6.3741 -2.6168 -0.4335 12 6 6.3292 -1.3750 -1.2094 13 6 7.6608 -3.1524 0.0180 14 6 8.2882 -3.9844 -1.1023 15 1 8.5779 -3.3854 -1.9657 16 6 7.4830 -5.2456 -1.4640 17 6 8.8399 -5.9693 -1.5367 18 7 9.3417 -4.9080 -0.6387 19 6 10.3694 -4.8172 0.2617 20 1 10.5056 -3.9129 0.8364 21 6 11.2363 -5.8874 0.4359 22 7 11.0700 -6.9895 -0.2641 23 14 12.6378 -5.7637 1.6647 24 1 12.6065 -4.4309 2.3187 25 1 12.4891 -6.8241 2.6934 26 1 13.9323 -5.9376 0.9581 27 6 3.6479 -1.3124 0.0058 28 1 -0.3634 -0.5094 0.8925 29 1 -0.3633 1.0277 -0.0050 30 1 -0.3634 -0.5180 -0.8875 31 1 0.9818 -2.6365 0.9240 32 1 0.9445 -2.6367 -0.8613 33 1 2.4822 -4.3751 -0.6542 34 1 2.9605 -3.8720 1.0004 35 1 6.1393 -0.5354 -0.5407 36 1 7.2836 -1.2278 -1.7152 37 1 5.5316 -1.4376 -1.9496 38 1 8.3268 -2.3290 0.2757 39 1 7.5050 -3.7816 0.8942 40 1 6.8387 -5.6007 -0.6597 41 1 6.9696 -5.1784 -2.4232 42 1 8.8333 -6.9615 -1.0854 43 1 9.2922 -5.9563 -2.5282 44 1 11.6760 -7.7372 -0.1426 45 1 4.1055 -0.5415 -0.6142 46 1 4.0341 -1.2604 1.0238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085948063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:18 Heat of formation + Delta-G solvation = -5.178177 kcal Electronic energy + Delta-G solvation = -26336.111593 eV Core-core repulsion = 22649.030170 eV Total energy + Delta-G solvation = -3687.081423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75753 -39.56854 -37.90294 -37.07029 -35.30277 -32.54341 -32.06776 -30.17460 -29.67031 -27.99162 -27.78469 -26.49949 -24.17063 -23.26766 -22.92509 -21.47255 -19.78523 -19.06057 -18.83774 -17.51604 -17.29984 -16.69392 -16.18813 -15.90083 -15.65783 -15.20457 -14.75802 -14.54113 -14.13083 -13.83246 -13.64177 -13.47008 -13.24346 -13.09973 -12.88398 -12.72747 -12.55265 -12.41757 -12.34218 -11.91256 -11.86900 -11.49629 -11.36426 -11.15487 -10.99964 -10.82599 -10.65363 -10.39939 -10.24894 -9.83838 -9.70702 -9.62018 -9.43064 -9.03361 -8.75214 -8.34732 -6.81592 -5.71317 -3.03156 2.29806 2.52026 2.75452 3.12720 3.41864 3.46794 3.49474 3.98971 4.14928 4.46854 4.49277 4.53660 4.75854 4.83618 4.87359 4.95247 4.99324 5.08250 5.18616 5.25118 5.34100 5.37521 5.43720 5.48347 5.52390 5.61954 5.64905 5.69325 5.79927 5.89346 5.95555 5.98314 6.14856 6.39834 6.56678 6.70617 6.78413 6.83349 7.14005 7.32286 7.48160 7.59515 7.65997 7.80893 8.03891 8.30985 9.09506 9.76475 10.66989 11.46135 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.002839 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.280788 B = 9860.370745 C =10137.240877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.525 3.475 3 O -0.546 6.546 4 N -0.621 5.621 5 C 0.099 3.901 6 C -0.112 4.112 7 C -0.124 4.124 8 H 0.110 0.890 9 C 0.523 3.477 10 O -0.523 6.523 11 N -0.606 5.606 12 C 0.075 3.925 13 C 0.115 3.885 14 C 0.129 3.871 15 H 0.040 0.960 16 C -0.158 4.158 17 C 0.162 3.838 18 N -0.601 5.601 19 C -0.221 4.221 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.114 3.886 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.024 0.976 44 H 0.252 0.748 45 H 0.089 0.911 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.403 11.112 -3.093 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.315 3.685 3 O -0.424 6.424 4 N -0.356 5.356 5 C -0.023 4.023 6 C -0.150 4.150 7 C -0.146 4.146 8 H 0.128 0.872 9 C 0.309 3.691 10 O -0.399 6.399 11 N -0.339 5.339 12 C -0.069 4.069 13 C -0.008 4.008 14 C 0.021 3.979 15 H 0.058 0.942 16 C -0.196 4.196 17 C 0.037 3.963 18 N -0.327 5.327 19 C -0.349 4.349 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C -0.008 4.008 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.806 11.090 -2.559 24.598 hybrid contribution 1.019 0.076 0.372 1.087 sum -20.788 11.166 -2.186 23.698 Atomic orbital electron populations 1.21897 0.91233 1.05447 1.04273 1.20523 0.90444 0.81903 0.75612 1.90741 1.70864 1.30628 1.50133 1.48581 1.07245 1.06119 1.73687 1.22164 0.96650 0.81432 1.02102 1.22547 0.91737 0.96901 1.03843 1.22510 0.93860 0.95838 1.02353 0.87173 1.20000 0.84738 0.84325 0.80076 1.90738 1.86700 1.23294 1.39165 1.47803 1.06922 1.24766 1.54412 1.21914 1.03448 0.86002 0.95528 1.21860 0.81696 0.98022 0.99269 1.22500 0.89244 0.92376 0.93819 0.94245 1.23811 0.98123 0.98003 0.99683 1.22182 0.87011 0.94746 0.92368 1.46008 1.32482 1.10067 1.44166 1.19028 1.03377 0.99871 1.12589 0.90350 1.24779 0.99289 0.96433 0.99987 1.69852 1.39125 1.04519 1.43209 0.86084 0.82092 0.77324 0.80491 1.20494 1.21730 1.21837 1.22270 0.80984 0.95865 1.01720 0.89375 0.88925 0.89367 0.90830 0.90929 0.89055 0.88930 0.92504 0.90413 0.91522 0.91438 0.88784 0.89582 0.94050 0.91285 0.95822 0.93773 0.89277 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 9.51 36.01 0.34 -0.57 16 2 C 0.53 5.19 7.96 -10.98 -0.09 5.10 16 3 O -0.55 -7.79 17.34 5.56 0.10 -7.70 16 4 N -0.62 -5.48 3.33 -170.53 -0.57 -6.05 16 5 C 0.10 0.62 6.49 -3.05 -0.02 0.60 16 6 C -0.11 -0.93 6.03 -24.89 -0.15 -1.08 16 7 C -0.12 -1.19 2.48 -89.63 -0.22 -1.42 16 8 H 0.11 0.90 7.59 -51.93 -0.39 0.51 16 9 C 0.52 7.31 6.65 -10.98 -0.07 7.23 16 10 O -0.52 -9.43 13.74 5.56 0.08 -9.35 16 11 N -0.61 -8.39 2.79 -181.58 -0.51 -8.90 16 12 C 0.07 0.74 8.89 59.84 0.53 1.27 16 13 C 0.11 2.05 5.38 -4.04 -0.02 2.02 16 14 C 0.13 2.64 4.57 -66.87 -0.31 2.33 16 15 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.16 -3.23 7.26 -25.79 -0.19 -3.41 16 17 C 0.16 4.01 7.46 -2.85 -0.02 3.99 16 18 N -0.60 -15.65 3.59 -169.74 -0.61 -16.26 16 19 C -0.22 -6.25 10.51 -15.06 -0.16 -6.40 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -27.97 11.46 55.49 0.64 -27.33 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C 0.11 1.11 5.36 -2.54 -0.01 1.10 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.93 7.50 -51.93 -0.39 0.54 16 35 H 0.06 0.51 7.25 -51.93 -0.38 0.13 16 36 H 0.08 0.76 8.03 -51.92 -0.42 0.35 16 37 H 0.07 0.53 6.41 -51.93 -0.33 0.20 16 38 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 39 H 0.09 1.98 7.26 -51.93 -0.38 1.60 16 40 H 0.09 1.88 6.58 -51.93 -0.34 1.54 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.89 7.28 -51.93 -0.38 1.51 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.09 0.86 6.12 -51.93 -0.32 0.55 16 46 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -36.09 366.70 -8.36 -44.46 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -7.51 Total: -2.34 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -0.48 Total: 10.43 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -1.05 Total: -58.53 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.17 Total: -17.05 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.09 -8.36 -44.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085948063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.278 kcal (2) G-P(sol) polarization free energy of solvation -36.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds