Wall clock time and date at job start Fri Apr 10 2020 18:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21281 * 120.00134 * 2 1 4 4 N 1.34780 * 119.99748 * 179.72385 * 2 1 3 5 5 C 1.47022 * 125.64513 * 359.69306 * 4 2 1 6 6 C 1.54343 * 107.26213 * 178.85066 * 5 4 2 7 7 C 1.55150 * 103.02019 * 338.13976 * 6 5 4 8 8 H 1.09004 * 111.00603 * 277.23485 * 7 6 5 9 9 C 1.50703 * 111.00590 * 153.38193 * 7 6 5 10 10 O 1.21279 * 119.99522 * 6.35017 * 9 7 6 11 11 N 1.34777 * 120.00301 * 186.34902 * 9 7 6 12 12 C 1.46496 * 119.99695 * 0.02562 * 11 9 7 13 13 C 1.46499 * 120.00137 * 179.97438 * 11 9 7 14 14 C 1.52996 * 109.46930 * 95.73665 * 13 11 9 15 15 H 1.09006 * 112.96236 * 66.82935 * 14 13 11 16 16 C 1.53940 * 113.77260 * 295.14379 * 14 13 11 17 17 C 1.53951 * 86.28898 * 222.08913 * 16 14 13 18 18 N 1.47579 * 113.76879 * 198.49868 * 14 13 11 19 19 C 1.36936 * 134.49401 * 318.93831 * 18 14 13 20 20 H 1.08001 * 120.00090 * 2.31778 * 19 18 14 21 21 C 1.38816 * 120.00193 * 182.31898 * 19 18 14 22 22 N 1.31620 * 119.99522 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00104 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47032 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47249 * 120.00059 * 23 21 19 26 26 H 1.48506 * 109.46868 * 239.99873 * 23 21 19 27 27 C 1.47420 * 125.64726 * 179.97438 * 4 2 1 28 28 H 1.08999 * 109.47373 * 240.28090 * 1 2 3 29 29 H 1.09004 * 109.46974 * 0.27779 * 1 2 3 30 30 H 1.08997 * 109.47307 * 120.27286 * 1 2 3 31 31 H 1.09001 * 109.88243 * 298.38966 * 5 4 2 32 32 H 1.08992 * 109.88519 * 59.56009 * 5 4 2 33 33 H 1.09002 * 110.84903 * 219.66900 * 6 5 4 34 34 H 1.09002 * 110.51427 * 96.44977 * 6 5 4 35 35 H 1.09003 * 109.47455 * 84.40487 * 12 11 9 36 36 H 1.09007 * 109.47254 * 204.39937 * 12 11 9 37 37 H 1.08995 * 109.47583 * 324.40084 * 12 11 9 38 38 H 1.08997 * 109.47031 * 215.73978 * 13 11 9 39 39 H 1.08997 * 109.46660 * 335.74008 * 13 11 9 40 40 H 1.08996 * 113.74482 * 336.43858 * 16 14 13 41 41 H 1.09000 * 113.74012 * 107.74865 * 16 14 13 42 42 H 1.09004 * 113.76584 * 137.90727 * 17 16 14 43 43 H 1.08995 * 113.77285 * 269.18797 * 17 16 14 44 44 H 0.97006 * 119.99154 * 179.97438 * 22 21 19 45 45 H 1.08995 * 110.37317 * 322.93097 * 27 4 2 46 46 H 1.09003 * 110.36581 * 85.25252 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0056 5 6 1.5745 -2.5065 0.0185 6 6 2.7279 -3.5318 -0.0087 7 6 3.9079 -2.7148 -0.5981 8 1 3.8582 -2.6863 -1.6867 9 6 5.2316 -3.2660 -0.1342 10 8 5.2686 -4.2939 0.5084 11 7 6.3741 -2.6168 -0.4335 12 6 6.3292 -1.3750 -1.2094 13 6 7.6608 -3.1524 0.0180 14 6 8.2882 -3.9844 -1.1023 15 1 8.5779 -3.3854 -1.9657 16 6 7.4830 -5.2456 -1.4640 17 6 8.8399 -5.9693 -1.5367 18 7 9.3417 -4.9080 -0.6387 19 6 10.3694 -4.8172 0.2617 20 1 10.5056 -3.9129 0.8364 21 6 11.2363 -5.8874 0.4359 22 7 11.0700 -6.9895 -0.2641 23 14 12.6378 -5.7637 1.6647 24 1 12.6065 -4.4309 2.3187 25 1 12.4891 -6.8241 2.6934 26 1 13.9323 -5.9376 0.9581 27 6 3.6479 -1.3124 0.0058 28 1 -0.3634 -0.5094 0.8925 29 1 -0.3633 1.0277 -0.0050 30 1 -0.3634 -0.5180 -0.8875 31 1 0.9818 -2.6365 0.9240 32 1 0.9445 -2.6367 -0.8613 33 1 2.4822 -4.3751 -0.6542 34 1 2.9605 -3.8720 1.0004 35 1 6.1393 -0.5354 -0.5407 36 1 7.2836 -1.2278 -1.7152 37 1 5.5316 -1.4376 -1.9496 38 1 8.3268 -2.3290 0.2757 39 1 7.5050 -3.7816 0.8942 40 1 6.8387 -5.6007 -0.6597 41 1 6.9696 -5.1784 -2.4232 42 1 8.8333 -6.9615 -1.0854 43 1 9.2922 -5.9563 -2.5282 44 1 11.6760 -7.7372 -0.1426 45 1 4.1055 -0.5415 -0.6142 46 1 4.0341 -1.2604 1.0238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085948063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:17 Heat of formation + Delta-G solvation = -30.096374 kcal Electronic energy + Delta-G solvation = -26337.192127 eV Core-core repulsion = 22649.030170 eV Total energy + Delta-G solvation = -3688.161957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.67368 -40.58122 -39.47672 -38.03240 -36.52554 -34.25218 -33.26444 -30.84680 -30.53030 -29.85128 -29.03243 -27.51873 -25.34671 -25.02632 -24.14676 -22.55284 -20.85835 -20.51168 -19.86790 -18.70969 -18.35296 -18.01236 -17.40705 -16.96174 -16.74563 -16.46529 -16.17686 -15.83060 -15.48384 -15.15714 -14.66649 -14.48466 -14.18082 -14.10343 -13.91815 -13.80549 -13.57906 -13.35977 -13.25962 -13.03486 -12.97079 -12.91074 -12.64723 -12.53098 -12.40431 -12.30026 -12.20176 -11.83102 -11.81933 -11.57582 -11.28561 -11.06162 -10.86650 -10.74190 -9.72887 -9.63676 -8.89080 -7.89831 -5.22501 1.43264 1.45069 1.54750 1.55742 1.61709 1.84791 2.12776 2.48846 3.28161 3.29496 3.36382 3.48373 3.75399 3.89099 3.90657 4.06562 4.20501 4.24340 4.28863 4.33095 4.34122 4.48216 4.51744 4.56629 4.63781 4.65727 4.76642 4.78736 4.84913 4.86744 4.93787 5.00566 5.02474 5.09133 5.12834 5.16221 5.23552 5.28756 5.50210 5.53915 5.75331 5.94412 6.44273 6.49424 6.91810 7.11252 7.20179 7.61888 8.58410 9.28237 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.002839 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.280788 B = 9860.370745 C =10137.240877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.518 3.482 3 O -0.600 6.600 4 N -0.620 5.620 5 C 0.103 3.897 6 C -0.112 4.112 7 C -0.111 4.111 8 H 0.137 0.863 9 C 0.518 3.482 10 O -0.570 6.570 11 N -0.605 5.605 12 C 0.070 3.930 13 C 0.129 3.871 14 C 0.135 3.865 15 H 0.060 0.940 16 C -0.130 4.130 17 C 0.156 3.844 18 N -0.631 5.631 19 C -0.225 4.225 20 H 0.086 0.914 21 C -0.073 4.073 22 N -0.957 5.957 23 Si 0.977 3.023 24 H -0.263 1.263 25 H -0.295 1.295 26 H -0.292 1.292 27 C 0.116 3.884 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.032 0.968 43 H 0.020 0.980 44 H 0.247 0.753 45 H 0.091 0.909 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.706 12.828 -4.049 28.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.310 3.690 3 O -0.482 6.482 4 N -0.354 5.354 5 C -0.018 4.018 6 C -0.151 4.151 7 C -0.133 4.133 8 H 0.154 0.846 9 C 0.306 3.694 10 O -0.449 6.449 11 N -0.337 5.337 12 C -0.072 4.072 13 C 0.005 3.995 14 C 0.029 3.971 15 H 0.078 0.922 16 C -0.168 4.168 17 C 0.030 3.970 18 N -0.358 5.358 19 C -0.353 4.353 20 H 0.104 0.896 21 C -0.266 4.266 22 N -0.607 5.607 23 Si 0.805 3.195 24 H -0.187 1.187 25 H -0.222 1.222 26 H -0.219 1.219 27 C -0.008 4.008 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.133 0.867 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.050 0.950 43 H 0.038 0.962 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.160 12.844 -3.533 27.589 hybrid contribution 1.681 -0.445 0.661 1.860 sum -22.479 12.399 -2.872 25.832 Atomic orbital electron populations 1.21924 0.87549 1.06079 1.06429 1.21366 0.92150 0.81152 0.74354 1.90716 1.72208 1.32506 1.52757 1.48686 1.06805 1.07073 1.72872 1.22322 0.95921 0.79078 1.04513 1.22561 0.91971 0.97863 1.02662 1.22458 0.91480 0.95673 1.03639 0.84570 1.20782 0.86010 0.83594 0.79024 1.90725 1.87464 1.25554 1.41153 1.47841 1.05388 1.25826 1.54652 1.22178 1.04845 0.84296 0.95906 1.21373 0.83791 0.97457 0.96920 1.22664 0.87202 0.92422 0.94836 0.92234 1.23500 0.95878 0.96656 1.00777 1.22124 0.89835 0.93377 0.91623 1.46374 1.33006 1.12193 1.44208 1.19438 1.03400 0.99845 1.12658 0.89636 1.25650 1.02202 0.96348 1.02379 1.70045 1.40177 1.05200 1.45248 0.85025 0.78694 0.77715 0.78025 1.18696 1.22231 1.21887 1.22145 0.82125 0.95834 1.00686 0.87360 0.89206 0.86737 0.89187 0.87723 0.87721 0.91343 0.91393 0.89879 0.88853 0.90482 0.92563 0.91190 0.90560 0.94975 0.96170 0.94438 0.89063 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.51 71.24 0.68 -0.51 16 2 C 0.52 9.09 7.96 87.66 0.70 9.79 16 3 O -0.60 -16.66 17.34 -3.03 -0.05 -16.71 16 4 N -0.62 -9.30 3.33 -811.81 -2.70 -12.00 16 5 C 0.10 0.90 6.49 86.74 0.56 1.46 16 6 C -0.11 -1.60 6.03 31.79 0.19 -1.41 16 7 C -0.11 -1.88 2.48 -10.16 -0.03 -1.90 16 8 H 0.14 1.66 7.59 -2.38 -0.02 1.65 16 9 C 0.52 13.97 6.65 87.66 0.58 14.55 16 10 O -0.57 -20.84 13.74 -3.02 -0.04 -20.88 16 11 N -0.60 -15.89 2.79 -846.78 -2.36 -18.25 16 12 C 0.07 1.19 8.89 127.77 1.14 2.32 16 13 C 0.13 4.56 5.38 86.38 0.46 5.03 16 14 C 0.14 5.44 4.57 45.09 0.21 5.64 16 15 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 16 C -0.13 -5.25 7.26 31.25 0.23 -5.02 16 17 C 0.16 7.91 7.46 86.44 0.65 8.55 16 18 N -0.63 -33.36 3.59 -690.93 -2.48 -35.83 16 19 C -0.23 -12.90 10.51 84.03 0.88 -12.02 16 20 H 0.09 4.64 7.83 -2.91 -0.02 4.61 16 21 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 22 N -0.96 -60.23 11.46 21.65 0.25 -59.98 16 23 Si 0.98 47.25 29.55 68.60 2.03 49.28 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 C 0.12 2.04 5.36 86.85 0.47 2.51 16 28 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.33 7.50 -2.39 -0.02 1.32 16 35 H 0.07 1.04 7.25 -2.39 -0.02 1.03 16 36 H 0.08 1.37 8.03 -2.38 -0.02 1.35 16 37 H 0.09 1.13 6.41 -2.39 -0.02 1.11 16 38 H 0.08 2.55 8.11 -2.39 -0.02 2.53 16 39 H 0.06 2.43 7.26 -2.39 -0.02 2.42 16 40 H 0.07 3.10 6.58 -2.39 -0.02 3.08 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.54 16 42 H 0.03 1.84 7.28 -2.39 -0.02 1.82 16 43 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 45 H 0.09 1.58 6.12 -2.39 -0.01 1.56 16 46 H 0.05 1.15 8.03 -2.39 -0.02 1.13 16 Total: -1.00 -83.07 366.70 2.79 -80.28 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.96 Total: 8.98 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 7.18 Total: 25.13 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -7.29 Total: -126.07 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.09 Total: -37.59 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -83.07 2.79 -80.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085948063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.183 kcal (2) G-P(sol) polarization free energy of solvation -83.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds