Wall clock time and date at job start Fri Apr 10 2020 18:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 119.99397 * 2 1 4 4 N 1.34776 * 120.00152 * 180.02562 * 2 1 3 5 5 C 1.47422 * 125.64644 * 5.00113 * 4 2 1 6 6 C 1.54909 * 104.83080 * 155.91861 * 5 4 2 7 7 C 1.55155 * 101.58078 * 37.00876 * 6 5 4 8 8 C 1.47019 * 125.64837 * 185.05697 * 4 2 1 9 9 H 1.09002 * 110.01164 * 300.50435 * 8 4 2 10 10 C 1.50701 * 109.88055 * 61.59259 * 8 4 2 11 11 O 1.21277 * 119.99943 * 12.54443 * 10 8 4 12 12 N 1.34780 * 119.99756 * 192.54169 * 10 8 4 13 13 C 1.46496 * 120.00201 * 6.12365 * 12 10 8 14 14 C 1.46501 * 119.99675 * 186.12602 * 12 10 8 15 15 C 1.53001 * 109.46777 * 260.50994 * 14 12 10 16 16 H 1.08992 * 112.74426 * 293.79355 * 15 14 12 17 17 C 1.53502 * 113.51679 * 163.00215 * 15 14 12 18 18 C 1.53503 * 83.34141 * 219.14507 * 17 15 14 19 19 N 1.47061 * 87.98434 * 26.06829 * 18 17 15 20 20 C 1.36940 * 136.05407 * 152.91865 * 19 18 17 21 21 H 1.07999 * 119.99940 * 144.61882 * 20 19 18 22 22 C 1.38811 * 120.00125 * 324.61297 * 20 19 18 23 23 N 1.31619 * 120.00274 * 168.58561 * 22 20 19 24 24 Si 1.86803 * 119.99843 * 348.58433 * 22 20 19 25 25 H 1.48498 * 109.46991 * 84.68048 * 24 22 20 26 26 H 1.48503 * 109.46874 * 204.67960 * 24 22 20 27 27 H 1.48495 * 109.47094 * 324.67421 * 24 22 20 28 28 H 1.09008 * 109.46999 * 269.99421 * 1 2 3 29 29 H 1.08999 * 109.47471 * 29.99711 * 1 2 3 30 30 H 1.09004 * 109.47337 * 149.99725 * 1 2 3 31 31 H 1.08997 * 110.36915 * 37.08628 * 5 4 2 32 32 H 1.08996 * 110.46261 * 274.80287 * 5 4 2 33 33 H 1.09006 * 111.00483 * 278.94001 * 6 5 4 34 34 H 1.08996 * 111.04138 * 155.09670 * 6 5 4 35 35 H 1.09006 * 110.72222 * 206.13610 * 7 6 5 36 36 H 1.08996 * 110.72438 * 82.86105 * 7 6 5 37 37 H 1.09000 * 109.47587 * 270.00214 * 13 12 10 38 38 H 1.09004 * 109.46967 * 29.99856 * 13 12 10 39 39 H 1.08999 * 109.47175 * 149.99627 * 13 12 10 40 40 H 1.09004 * 109.46652 * 140.51494 * 14 12 10 41 41 H 1.08995 * 109.47237 * 20.51543 * 14 12 10 42 42 H 1.08998 * 114.20927 * 105.56053 * 17 15 14 43 43 H 1.09007 * 114.20639 * 332.73157 * 17 15 14 44 44 H 1.08994 * 113.46907 * 271.28494 * 18 17 15 45 45 H 1.09001 * 113.46774 * 140.84678 * 18 17 15 46 46 H 0.96996 * 119.99951 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5770 -2.5079 -0.1056 6 6 2.7036 -3.4069 -0.6733 7 6 3.9545 -2.8234 0.0352 8 6 3.6400 -1.3142 0.1047 9 1 4.1276 -0.7955 -0.7206 10 6 4.1184 -0.7508 1.4180 11 8 3.3191 -0.4807 2.2892 12 7 5.4347 -0.5471 1.6244 13 6 6.3871 -0.7455 0.5291 14 6 5.9128 -0.1273 2.9440 15 6 6.1511 1.3840 2.9430 16 1 6.9668 1.6816 2.2842 17 6 6.2499 1.9894 4.3501 18 6 5.4553 3.1400 3.7168 19 7 4.9237 2.1702 2.7474 20 6 3.7866 2.0519 1.9936 21 1 3.8367 1.6209 1.0047 22 6 2.5695 2.4859 2.5007 23 7 1.5233 2.5832 1.7079 24 14 2.4163 2.9317 4.3083 25 1 2.8476 4.3384 4.5094 26 1 1.0025 2.7813 4.7371 27 1 3.2768 2.0298 5.1152 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 0.7271 -2.4888 -0.7877 32 1 1.2663 -2.8639 0.8767 33 1 2.7816 -3.2992 -1.7552 34 1 2.5489 -4.4498 -0.3967 35 1 4.8521 -3.0034 -0.5566 36 1 4.0611 -3.2416 1.0361 37 1 6.7329 -1.7792 0.5309 38 1 5.8991 -0.5273 -0.4208 39 1 7.2381 -0.0775 0.6622 40 1 6.8460 -0.6421 3.1729 41 1 5.1658 -0.3770 3.6974 42 1 7.2625 2.2581 4.6510 43 1 5.7034 1.4362 5.1141 44 1 6.0857 3.9052 3.2641 45 1 4.6939 3.5563 4.3763 46 1 0.6727 2.8861 2.0624 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085990387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:24 Heat of formation + Delta-G solvation = 41.803560 kcal Electronic energy + Delta-G solvation = -29032.477569 eV Core-core repulsion = 25347.433427 eV Total energy + Delta-G solvation = -3685.044142 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.99262 -38.57312 -37.35759 -36.19344 -34.52220 -31.80003 -31.24207 -29.92471 -28.55688 -28.11095 -27.47661 -25.81918 -23.53745 -22.91411 -22.21961 -21.12771 -19.53672 -18.76278 -17.71801 -16.98558 -16.78424 -16.01987 -15.35293 -15.26061 -14.96675 -14.63880 -13.90286 -13.71314 -13.65874 -13.15545 -13.07343 -12.95587 -12.61980 -12.33984 -12.14331 -12.07601 -12.01236 -11.78898 -11.62307 -11.40274 -11.29715 -11.02183 -10.98495 -10.84997 -10.81241 -10.65136 -10.49282 -10.20395 -9.97444 -9.56045 -9.19744 -8.79953 -8.33207 -8.08105 -7.68451 -7.62369 -6.40708 -5.31505 -2.82065 3.43458 3.60914 3.69971 3.75700 3.80468 3.94352 4.08479 4.67655 4.82268 4.95096 4.99429 5.08407 5.31486 5.37848 5.44584 5.55388 5.62452 5.66424 5.71438 5.77632 5.77964 5.82923 5.90217 5.95373 5.98643 6.01168 6.03097 6.07757 6.15710 6.28211 6.30487 6.35203 6.39437 6.56460 6.63488 6.65015 6.75363 7.00700 7.22502 7.37122 7.88423 8.26262 8.47019 8.78922 9.26335 9.31909 9.64488 10.21334 10.87304 11.75084 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.014418 B = 0.008081 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.530371 B = 3464.261447 C = 4868.301434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.500 3.500 3 O -0.416 6.416 4 N -0.619 5.619 5 C 0.106 3.894 6 C -0.131 4.131 7 C -0.118 4.118 8 C 0.129 3.871 9 H 0.082 0.918 10 C 0.503 3.497 11 O -0.467 6.467 12 N -0.616 5.616 13 C 0.088 3.912 14 C 0.125 3.875 15 C 0.123 3.877 16 H 0.044 0.956 17 C -0.156 4.156 18 C 0.095 3.905 19 N -0.604 5.604 20 C -0.202 4.202 21 H 0.102 0.898 22 C 0.054 3.946 23 N -0.869 5.869 24 Si 0.870 3.130 25 H -0.299 1.299 26 H -0.311 1.311 27 H -0.277 1.277 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.036 0.964 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.005 -13.952 -5.124 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.287 3.713 3 O -0.280 6.280 4 N -0.360 5.360 5 C -0.018 4.018 6 C -0.169 4.169 7 C -0.157 4.157 8 C 0.021 3.979 9 H 0.100 0.900 10 C 0.288 3.712 11 O -0.336 6.336 12 N -0.352 5.352 13 C -0.056 4.056 14 C 0.001 3.999 15 C 0.015 3.985 16 H 0.061 0.939 17 C -0.195 4.195 18 C -0.030 4.030 19 N -0.332 5.332 20 C -0.329 4.329 21 H 0.119 0.881 22 C -0.146 4.146 23 N -0.511 5.511 24 Si 0.703 3.297 25 H -0.228 1.228 26 H -0.240 1.240 27 H -0.203 1.203 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.353 -13.025 -4.821 14.885 hybrid contribution -0.057 0.427 1.252 1.324 sum 5.296 -12.598 -3.569 14.124 Atomic orbital electron populations 1.21625 0.93114 1.02049 1.03611 1.20307 0.89978 0.82277 0.78772 1.91037 1.68460 1.27943 1.40522 1.48400 1.04483 1.05718 1.77418 1.22125 0.96062 0.83514 1.00079 1.22758 0.94747 0.99023 1.00353 1.22537 0.98579 0.92959 1.01577 1.21263 0.84352 0.95852 0.96457 0.90049 1.20393 0.81836 0.79161 0.89806 1.90775 1.52476 1.45547 1.44788 1.47471 1.06499 1.70158 1.11118 1.21603 0.93636 0.99787 0.90602 1.21622 0.98171 0.95033 0.85109 1.22630 0.91610 0.91573 0.92726 0.93870 1.23562 0.98876 0.99765 0.97300 1.22624 0.94689 0.93234 0.92412 1.45824 1.16425 1.18755 1.52211 1.18619 0.80491 1.37999 0.95743 0.88062 1.25140 0.95287 0.99148 0.95016 1.69990 1.00044 1.48555 1.32532 0.87035 0.74862 0.76989 0.90794 1.22760 1.24003 1.20319 0.90027 0.89866 0.92792 0.91059 0.92362 0.90665 0.90272 0.90055 0.90672 0.93847 0.91872 0.91858 0.92665 0.90027 0.92455 0.90375 0.94875 0.94573 0.94616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.95 36.01 0.36 -2.30 16 2 C 0.50 11.10 7.16 -10.98 -0.08 11.03 16 3 O -0.42 -11.40 10.79 5.56 0.06 -11.34 16 4 N -0.62 -11.36 2.77 -164.33 -0.46 -11.81 16 5 C 0.11 1.40 6.59 -2.53 -0.02 1.39 16 6 C -0.13 -1.32 7.08 -24.58 -0.17 -1.49 16 7 C -0.12 -1.42 6.08 -24.90 -0.15 -1.57 16 8 C 0.13 2.23 2.46 -68.11 -0.17 2.06 16 9 H 0.08 1.43 6.52 -51.93 -0.34 1.09 16 10 C 0.50 10.58 4.06 -10.98 -0.04 10.53 16 11 O -0.47 -12.21 12.89 5.56 0.07 -12.14 16 12 N -0.62 -11.31 2.70 -181.57 -0.49 -11.80 16 13 C 0.09 1.19 9.87 59.84 0.59 1.78 16 14 C 0.12 2.34 5.45 -4.04 -0.02 2.32 16 15 C 0.12 2.52 4.29 -72.39 -0.31 2.21 16 16 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.16 -3.02 8.02 -26.21 -0.21 -3.23 16 18 C 0.10 2.23 7.54 -8.50 -0.06 2.16 16 19 N -0.60 -15.72 3.10 -177.00 -0.55 -16.27 16 20 C -0.20 -6.00 6.90 -15.06 -0.10 -6.11 16 21 H 0.10 3.24 4.50 -52.49 -0.24 3.01 16 22 C 0.05 1.69 5.28 -17.43 -0.09 1.59 16 23 N -0.87 -27.46 10.95 55.49 0.61 -26.85 16 24 Si 0.87 25.18 25.07 -169.99 -4.26 20.92 16 25 H -0.30 -8.58 6.87 56.52 0.39 -8.19 16 26 H -0.31 -9.18 7.11 56.52 0.40 -8.78 16 27 H -0.28 -8.01 7.10 56.52 0.40 -7.61 16 28 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 29 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.05 0.76 6.51 -51.93 -0.34 0.42 16 31 H 0.07 0.80 6.87 -51.93 -0.36 0.45 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.86 6.16 -51.93 -0.32 0.54 16 39 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.78 7.18 -51.93 -0.37 1.41 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.57 8.07 -51.93 -0.42 1.16 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.04 0.92 4.37 -51.93 -0.23 0.69 16 46 H 0.24 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -38.71 344.06 -7.55 -46.26 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.23 Total: -2.51 kcal Atomic # 6 Polarization: 20.85 SS G_CDS: -0.49 Total: 20.36 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: -0.89 Total: -66.74 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.13 Total: -23.48 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -4.26 Total: 20.92 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -38.71 -7.55 -46.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085990387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.062 kcal (2) G-P(sol) polarization free energy of solvation -38.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds