Wall clock time and date at job start Fri Apr 10 2020 18:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 119.99397 * 2 1 4 4 N 1.34776 * 120.00152 * 180.02562 * 2 1 3 5 5 C 1.47422 * 125.64644 * 5.00113 * 4 2 1 6 6 C 1.54909 * 104.83080 * 155.91861 * 5 4 2 7 7 C 1.55155 * 101.58078 * 37.00876 * 6 5 4 8 8 C 1.47019 * 125.64837 * 185.05697 * 4 2 1 9 9 H 1.09002 * 110.01164 * 300.50435 * 8 4 2 10 10 C 1.50701 * 109.88055 * 61.59259 * 8 4 2 11 11 O 1.21277 * 119.99943 * 12.54443 * 10 8 4 12 12 N 1.34780 * 119.99756 * 192.54169 * 10 8 4 13 13 C 1.46496 * 120.00201 * 6.12365 * 12 10 8 14 14 C 1.46501 * 119.99675 * 186.12602 * 12 10 8 15 15 C 1.53001 * 109.46777 * 260.50994 * 14 12 10 16 16 H 1.08992 * 112.74426 * 293.79355 * 15 14 12 17 17 C 1.53502 * 113.51679 * 163.00215 * 15 14 12 18 18 C 1.53503 * 83.34141 * 219.14507 * 17 15 14 19 19 N 1.47061 * 87.98434 * 26.06829 * 18 17 15 20 20 C 1.36940 * 136.05407 * 152.91865 * 19 18 17 21 21 H 1.07999 * 119.99940 * 144.61882 * 20 19 18 22 22 C 1.38811 * 120.00125 * 324.61297 * 20 19 18 23 23 N 1.31619 * 120.00274 * 168.58561 * 22 20 19 24 24 Si 1.86803 * 119.99843 * 348.58433 * 22 20 19 25 25 H 1.48498 * 109.46991 * 84.68048 * 24 22 20 26 26 H 1.48503 * 109.46874 * 204.67960 * 24 22 20 27 27 H 1.48495 * 109.47094 * 324.67421 * 24 22 20 28 28 H 1.09008 * 109.46999 * 269.99421 * 1 2 3 29 29 H 1.08999 * 109.47471 * 29.99711 * 1 2 3 30 30 H 1.09004 * 109.47337 * 149.99725 * 1 2 3 31 31 H 1.08997 * 110.36915 * 37.08628 * 5 4 2 32 32 H 1.08996 * 110.46261 * 274.80287 * 5 4 2 33 33 H 1.09006 * 111.00483 * 278.94001 * 6 5 4 34 34 H 1.08996 * 111.04138 * 155.09670 * 6 5 4 35 35 H 1.09006 * 110.72222 * 206.13610 * 7 6 5 36 36 H 1.08996 * 110.72438 * 82.86105 * 7 6 5 37 37 H 1.09000 * 109.47587 * 270.00214 * 13 12 10 38 38 H 1.09004 * 109.46967 * 29.99856 * 13 12 10 39 39 H 1.08999 * 109.47175 * 149.99627 * 13 12 10 40 40 H 1.09004 * 109.46652 * 140.51494 * 14 12 10 41 41 H 1.08995 * 109.47237 * 20.51543 * 14 12 10 42 42 H 1.08998 * 114.20927 * 105.56053 * 17 15 14 43 43 H 1.09007 * 114.20639 * 332.73157 * 17 15 14 44 44 H 1.08994 * 113.46907 * 271.28494 * 18 17 15 45 45 H 1.09001 * 113.46774 * 140.84678 * 18 17 15 46 46 H 0.96996 * 119.99951 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5770 -2.5079 -0.1056 6 6 2.7036 -3.4069 -0.6733 7 6 3.9545 -2.8234 0.0352 8 6 3.6400 -1.3142 0.1047 9 1 4.1276 -0.7955 -0.7206 10 6 4.1184 -0.7508 1.4180 11 8 3.3191 -0.4807 2.2892 12 7 5.4347 -0.5471 1.6244 13 6 6.3871 -0.7455 0.5291 14 6 5.9128 -0.1273 2.9440 15 6 6.1511 1.3840 2.9430 16 1 6.9668 1.6816 2.2842 17 6 6.2499 1.9894 4.3501 18 6 5.4553 3.1400 3.7168 19 7 4.9237 2.1702 2.7474 20 6 3.7866 2.0519 1.9936 21 1 3.8367 1.6209 1.0047 22 6 2.5695 2.4859 2.5007 23 7 1.5233 2.5832 1.7079 24 14 2.4163 2.9317 4.3083 25 1 2.8476 4.3384 4.5094 26 1 1.0025 2.7813 4.7371 27 1 3.2768 2.0298 5.1152 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 0.7271 -2.4888 -0.7877 32 1 1.2663 -2.8639 0.8767 33 1 2.7816 -3.2992 -1.7552 34 1 2.5489 -4.4498 -0.3967 35 1 4.8521 -3.0034 -0.5566 36 1 4.0611 -3.2416 1.0361 37 1 6.7329 -1.7792 0.5309 38 1 5.8991 -0.5273 -0.4208 39 1 7.2381 -0.0775 0.6622 40 1 6.8460 -0.6421 3.1729 41 1 5.1658 -0.3770 3.6974 42 1 7.2625 2.2581 4.6510 43 1 5.7034 1.4362 5.1141 44 1 6.0857 3.9052 3.2641 45 1 4.6939 3.5563 4.3763 46 1 0.6727 2.8861 2.0624 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085990387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:22 Heat of formation + Delta-G solvation = 12.338138 kcal Electronic energy + Delta-G solvation = -29033.755285 eV Core-core repulsion = 25347.433427 eV Total energy + Delta-G solvation = -3686.321858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.43282 -40.21164 -39.03329 -37.62295 -36.06745 -34.00020 -32.65531 -31.21659 -30.23192 -29.86683 -28.85698 -27.13402 -25.03082 -24.86011 -23.71024 -22.16699 -21.03273 -20.54724 -19.17783 -18.88103 -18.28653 -17.53054 -17.13873 -16.73362 -16.59655 -16.20010 -15.55461 -15.25113 -15.06257 -14.94739 -14.69229 -14.27734 -14.22323 -13.97559 -13.63350 -13.47055 -13.36112 -13.12880 -13.09515 -12.91200 -12.87093 -12.67734 -12.62608 -12.57970 -12.28791 -12.12449 -11.91695 -11.82090 -11.64208 -11.50422 -11.28901 -10.38896 -10.29702 -10.08367 -9.18836 -9.14196 -8.46496 -7.61343 -5.07391 1.24107 1.31930 1.42205 1.98763 2.27774 2.50569 2.59110 2.65348 3.26563 3.55943 3.67391 3.72687 3.81018 3.97614 4.13527 4.24549 4.27734 4.34433 4.42518 4.47776 4.52380 4.57686 4.66482 4.67624 4.69407 4.73846 4.82540 4.87662 4.90914 4.91518 4.97599 5.01270 5.04839 5.11307 5.13541 5.18952 5.38964 5.56628 5.68936 5.91491 6.01203 6.55453 6.81691 6.97842 7.03809 7.78965 7.85992 8.04171 8.71597 9.46698 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.014418 B = 0.008081 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.530371 B = 3464.261447 C = 4868.301434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.488 3.512 3 O -0.481 6.481 4 N -0.623 5.623 5 C 0.094 3.906 6 C -0.114 4.114 7 C -0.107 4.107 8 C 0.123 3.877 9 H 0.075 0.925 10 C 0.496 3.504 11 O -0.534 6.534 12 N -0.619 5.619 13 C 0.082 3.918 14 C 0.126 3.874 15 C 0.123 3.877 16 H 0.068 0.932 17 C -0.130 4.130 18 C 0.083 3.917 19 N -0.641 5.641 20 C -0.165 4.165 21 H 0.078 0.922 22 C 0.000 4.000 23 N -0.893 5.893 24 Si 0.911 3.089 25 H -0.300 1.300 26 H -0.328 1.328 27 H -0.281 1.281 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.043 0.957 42 H 0.109 0.891 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.010 0.990 46 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.179 -16.929 -6.014 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.276 3.724 3 O -0.350 6.350 4 N -0.362 5.362 5 C -0.028 4.028 6 C -0.152 4.152 7 C -0.145 4.145 8 C 0.015 3.985 9 H 0.093 0.907 10 C 0.283 3.717 11 O -0.408 6.408 12 N -0.355 5.355 13 C -0.060 4.060 14 C 0.002 3.998 15 C 0.017 3.983 16 H 0.085 0.915 17 C -0.168 4.168 18 C -0.042 4.042 19 N -0.370 5.370 20 C -0.293 4.293 21 H 0.095 0.905 22 C -0.196 4.196 23 N -0.539 5.539 24 Si 0.746 3.254 25 H -0.228 1.228 26 H -0.258 1.258 27 H -0.207 1.207 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.061 0.939 42 H 0.127 0.873 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.028 0.972 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.610 -16.071 -5.719 19.108 hybrid contribution -0.869 1.287 1.483 2.147 sum 7.741 -14.783 -4.236 17.217 Atomic orbital electron populations 1.21531 0.91319 1.03814 1.02800 1.20869 0.91227 0.82634 0.77688 1.90987 1.69863 1.30487 1.43702 1.48451 1.05508 1.06654 1.75611 1.22484 0.98178 0.81522 1.00653 1.22777 0.91688 0.99686 1.01003 1.22580 1.01048 0.88576 1.02285 1.21493 0.83675 0.99317 0.93981 0.90681 1.21138 0.82271 0.78021 0.90279 1.90748 1.54286 1.48720 1.47028 1.47654 1.06672 1.68962 1.12163 1.21891 0.92710 1.02689 0.88678 1.21569 0.99173 0.94320 0.84721 1.22828 0.89262 0.92434 0.93779 0.91467 1.23374 1.00622 0.96744 0.96108 1.22844 0.94813 0.94631 0.91893 1.46129 1.17099 1.21712 1.52036 1.18356 0.81565 1.34470 0.94928 0.90459 1.25577 0.95937 1.01329 0.96729 1.70186 0.99851 1.51233 1.32676 0.86342 0.73448 0.76475 0.89087 1.22847 1.25787 1.20732 0.91945 0.91003 0.88069 0.88791 0.93176 0.88846 0.87031 0.86515 0.91278 0.89664 0.92287 0.90631 0.87530 0.93861 0.87302 0.91620 0.92988 0.97212 0.95994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 9.95 71.24 0.71 -4.48 16 2 C 0.49 22.58 7.16 87.66 0.63 23.21 16 3 O -0.48 -27.96 10.79 -3.02 -0.03 -27.99 16 4 N -0.62 -22.86 2.77 -792.21 -2.19 -25.05 16 5 C 0.09 2.29 6.59 86.86 0.57 2.86 16 6 C -0.11 -1.81 7.08 31.99 0.23 -1.58 16 7 C -0.11 -2.18 6.08 31.78 0.19 -1.98 16 8 C 0.12 4.15 2.46 44.59 0.11 4.26 16 9 H 0.08 2.60 6.52 -2.39 -0.02 2.58 16 10 C 0.50 20.89 4.06 87.66 0.36 21.25 16 11 O -0.53 -29.02 12.89 -3.02 -0.04 -29.06 16 12 N -0.62 -21.64 2.70 -846.75 -2.28 -23.93 16 13 C 0.08 1.93 9.87 127.77 1.26 3.19 16 14 C 0.13 4.45 5.45 86.38 0.47 4.92 16 15 C 0.12 4.76 4.29 41.80 0.18 4.94 16 16 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 17 C -0.13 -4.64 8.02 30.93 0.25 -4.39 16 18 C 0.08 3.79 7.54 83.18 0.63 4.41 16 19 N -0.64 -33.36 3.10 -713.89 -2.21 -35.57 16 20 C -0.16 -10.13 6.90 84.03 0.58 -9.55 16 21 H 0.08 5.17 4.50 -2.91 -0.01 5.16 16 22 C 0.00 0.02 5.28 84.86 0.45 0.47 16 23 N -0.89 -60.07 10.95 21.65 0.24 -59.83 16 24 Si 0.91 54.67 25.07 68.60 1.72 56.39 16 25 H -0.30 -17.60 6.87 99.48 0.68 -16.92 16 26 H -0.33 -20.20 7.11 99.48 0.71 -19.49 16 27 H -0.28 -16.69 7.10 99.48 0.71 -15.98 16 28 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 29 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.10 2.77 6.51 -2.38 -0.02 2.76 16 31 H 0.09 1.84 6.87 -2.39 -0.02 1.82 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.07 1.53 7.84 -2.39 -0.02 1.51 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.45 6.16 -2.38 -0.01 1.43 16 39 H 0.07 1.60 8.07 -2.39 -0.02 1.58 16 40 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 41 H 0.04 1.87 7.18 -2.39 -0.02 1.86 16 42 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 43 H 0.07 2.53 8.07 -2.38 -0.02 2.51 16 44 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.01 0.50 4.37 -2.39 -0.01 0.49 16 46 H 0.23 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -94.53 344.06 2.76 -91.77 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 0.95 Total: 5.75 kcal Atomic # 6 Polarization: 40.93 SS G_CDS: 6.61 Total: 47.53 kcal Atomic # 7 Polarization: -137.93 SS G_CDS: -6.45 Total: -144.39 kcal Atomic # 8 Polarization: -56.98 SS G_CDS: -0.07 Total: -57.05 kcal Atomic # 14 Polarization: 54.67 SS G_CDS: 1.72 Total: 56.39 kcal Total: -94.53 2.76 -91.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085990387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.105 kcal (2) G-P(sol) polarization free energy of solvation -94.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds