Wall clock time and date at job start Fri Apr 10 2020 18:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.64019 * 2 1 4 4 C 1.54340 * 111.00112 * 236.92921 * 2 1 3 5 5 N 1.47029 * 107.26150 * 219.60022 * 4 2 1 6 6 C 1.34772 * 125.64364 * 178.84759 * 5 4 2 7 7 O 1.21277 * 120.00307 * 4.41185 * 6 5 4 8 8 C 1.50702 * 119.99842 * 184.40678 * 6 5 4 9 9 C 1.53000 * 109.47250 * 201.10492 * 8 6 5 10 10 C 1.53005 * 109.46887 * 81.10876 * 8 6 5 11 11 N 1.46904 * 109.47337 * 321.11075 * 8 6 5 12 12 C 1.48561 * 110.99874 * 297.87806 * 11 8 6 13 13 C 1.54370 * 104.69677 * 200.90123 * 12 11 8 14 14 C 1.54567 * 104.91727 * 23.88109 * 13 12 11 15 15 C 1.48556 * 111.00097 * 182.45824 * 11 8 6 16 16 C 1.47425 * 108.70482 * 358.58343 * 5 4 2 17 17 C 1.54912 * 104.83208 * 24.35848 * 16 5 4 18 18 H 1.08994 * 111.00669 * 81.09661 * 17 16 5 19 19 N 1.46501 * 111.00560 * 204.91966 * 17 16 5 20 20 C 1.36937 * 119.99543 * 273.54297 * 19 17 16 21 21 H 1.08002 * 120.00073 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00148 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00034 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00295 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47417 * 59.99856 * 24 22 20 26 26 H 1.48497 * 109.47021 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47112 * 299.99846 * 24 22 20 28 28 H 1.08998 * 109.47526 * 296.85222 * 1 2 3 29 29 H 1.08997 * 109.47453 * 56.85492 * 1 2 3 30 30 H 1.09003 * 109.47360 * 176.85370 * 1 2 3 31 31 H 1.09000 * 109.99316 * 100.12636 * 4 2 1 32 32 H 1.08998 * 109.77548 * 338.95137 * 4 2 1 33 33 H 1.09000 * 109.46671 * 182.71268 * 9 8 6 34 34 H 1.08996 * 109.47182 * 302.71894 * 9 8 6 35 35 H 1.08997 * 109.46992 * 62.71947 * 9 8 6 36 36 H 1.09005 * 109.46770 * 304.67065 * 10 8 6 37 37 H 1.08998 * 109.47429 * 64.66438 * 10 8 6 38 38 H 1.08990 * 109.47301 * 184.67061 * 10 8 6 39 39 H 1.09000 * 110.41032 * 319.73663 * 12 11 8 40 40 H 1.08998 * 110.41349 * 82.06176 * 12 11 8 41 41 H 1.09005 * 110.32391 * 142.80891 * 13 12 11 42 42 H 1.09006 * 110.32641 * 265.01310 * 13 12 11 43 43 H 1.09003 * 110.29900 * 241.08867 * 14 13 12 44 44 H 1.08999 * 110.32299 * 118.89417 * 14 13 12 45 45 H 1.09004 * 110.41044 * 277.81743 * 15 11 8 46 46 H 1.09007 * 110.41155 * 40.13629 * 15 11 8 47 47 H 1.08997 * 110.36541 * 143.19239 * 16 5 4 48 48 H 1.08994 * 110.36799 * 265.41001 * 16 5 4 49 49 H 0.96995 * 120.00353 * 93.54370 * 19 17 16 50 50 H 0.96994 * 120.00349 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7862 -1.2074 5 7 3.2495 -1.5469 -0.7355 6 6 4.0004 -2.3783 -1.4846 7 8 3.7828 -2.4874 -2.6727 8 6 5.1106 -3.1724 -0.8459 9 6 6.1123 -3.6032 -1.9193 10 6 4.5254 -4.4127 -0.1674 11 7 5.7929 -2.3423 0.1558 12 6 6.4186 -1.1521 -0.4759 13 6 7.5008 -0.6995 0.5276 14 6 7.8397 -1.9665 1.3455 15 6 6.9331 -3.0735 0.7659 16 6 3.4653 -1.2447 0.6912 17 6 2.0790 -0.7935 1.2151 18 1 1.4472 -1.6530 1.4388 19 7 2.2175 0.0726 2.3885 20 6 2.3128 -0.4783 3.6386 21 1 2.2863 -1.5512 3.7593 22 6 2.4445 0.3423 4.7504 23 7 2.4784 1.6497 4.6032 24 14 2.5753 -0.4092 6.4556 25 1 3.7681 -1.2916 6.5176 26 1 2.7074 0.6725 7.4644 27 1 1.3549 -1.2059 6.7404 28 1 -0.3634 0.4642 0.9168 29 1 -0.3634 0.5619 -0.8604 30 1 -0.3634 -1.0261 -0.0564 31 1 2.3848 -0.0959 -1.9952 32 1 1.3216 -1.4700 -1.5824 33 1 6.8894 -4.2180 -1.4651 34 1 5.5963 -4.1787 -2.6878 35 1 6.5648 -2.7196 -2.3694 36 1 3.7521 -4.1098 0.5386 37 1 4.0916 -5.0690 -0.9218 38 1 5.3154 -4.9428 0.3644 39 1 6.8731 -1.4225 -1.4290 40 1 5.6789 -0.3643 -0.6184 41 1 8.3833 -0.3420 -0.0030 42 1 7.1091 0.0803 1.1808 43 1 7.6151 -1.8070 2.4002 44 1 8.8893 -2.2307 1.2168 45 1 6.5812 -3.7316 1.5604 46 1 7.4669 -3.6463 0.0075 47 1 3.7993 -2.1364 1.2216 48 1 4.1944 -0.4423 0.8029 49 1 2.2416 1.0362 2.2800 50 1 2.5708 2.2231 5.3800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054967969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:10 Heat of formation + Delta-G solvation = -4.798250 kcal Electronic energy + Delta-G solvation = -28304.323092 eV Core-core repulsion = 24753.091238 eV Total energy + Delta-G solvation = -3551.231853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70539 -38.63075 -37.42841 -34.27848 -33.98752 -32.31453 -30.62701 -29.37596 -28.83552 -27.46232 -27.37757 -26.27689 -24.02519 -23.25927 -21.63341 -20.90459 -20.12709 -19.76060 -18.36460 -17.20886 -17.08523 -15.98153 -15.86024 -15.38183 -15.13050 -14.47796 -14.23885 -14.06630 -13.56870 -13.50069 -13.23126 -13.03812 -12.91414 -12.80668 -12.67006 -12.35042 -12.09706 -11.96638 -11.78997 -11.59593 -11.56281 -11.47795 -11.24505 -11.16727 -11.04074 -11.01577 -10.92471 -10.61223 -10.55484 -10.31418 -10.21262 -9.83330 -9.71915 -9.47121 -8.95582 -8.34610 -8.17394 -6.99133 -5.79170 -3.08397 2.83260 3.32492 3.42730 3.47881 3.48152 3.88233 4.49050 4.58950 4.64023 4.85319 4.88809 4.94779 5.04104 5.15530 5.22518 5.25104 5.32339 5.47220 5.50944 5.55804 5.61245 5.65436 5.70853 5.74229 5.75716 5.80184 5.85926 5.87337 5.95008 6.00201 6.02635 6.09114 6.11941 6.14236 6.21260 6.28296 6.31854 6.37936 6.55012 6.67096 6.67552 6.79690 6.84838 6.93555 7.03789 7.68816 7.94125 8.38247 8.45864 9.50529 10.05622 10.40691 11.43088 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.005541 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.613305 B = 5051.709260 C = 6475.379027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.082 0.918 4 C 0.115 3.885 5 N -0.600 5.600 6 C 0.540 3.460 7 O -0.560 6.560 8 C 0.084 3.916 9 C -0.169 4.169 10 C -0.136 4.136 11 N -0.485 5.485 12 C 0.021 3.979 13 C -0.121 4.121 14 C -0.122 4.122 15 C 0.026 3.974 16 C 0.093 3.907 17 C 0.170 3.830 18 H 0.060 0.940 19 N -0.710 5.710 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.009 4.009 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.050 0.950 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.386 0.614 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.345 -8.122 -10.482 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.100 0.900 4 C -0.008 4.008 5 N -0.332 5.332 6 C 0.327 3.673 7 O -0.439 6.439 8 C -0.010 4.010 9 C -0.228 4.228 10 C -0.193 4.193 11 N -0.210 5.210 12 C -0.106 4.106 13 C -0.160 4.160 14 C -0.160 4.160 15 C -0.101 4.101 16 C -0.032 4.032 17 C 0.058 3.942 18 H 0.078 0.922 19 N -0.350 5.350 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.205 4.205 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.068 0.932 47 H 0.103 0.897 48 H 0.088 0.912 49 H 0.220 0.780 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.835 -8.159 -10.565 14.997 hybrid contribution 0.759 -0.215 0.349 0.863 sum 7.594 -8.373 -10.215 15.236 Atomic orbital electron populations 1.21658 0.94135 1.01423 1.01896 1.22468 0.96233 0.99782 0.94860 0.90004 1.21971 0.87674 0.94401 0.96783 1.48476 1.28894 1.42648 1.13148 1.19902 0.82522 0.79163 0.85737 1.90653 1.71249 1.66869 1.15156 1.21295 0.93497 0.94000 0.92159 1.22292 0.99132 1.02226 0.99106 1.21813 1.01813 0.94923 1.00788 1.65940 1.23437 1.05484 1.26134 1.23298 0.96950 0.93909 0.96478 1.22303 0.97636 0.98325 0.97698 1.22313 0.98440 0.94482 1.00799 1.23231 0.91323 0.96742 0.98820 1.23506 1.00195 1.01828 0.77639 1.21482 0.92764 0.93407 0.86511 0.92232 1.42238 1.87050 1.05014 1.00671 1.19164 1.42423 0.91753 0.83646 0.91180 1.24706 1.02740 0.95304 0.97775 1.69642 1.57051 1.01986 1.29310 0.86306 0.77896 0.77772 0.84421 1.21242 1.21782 1.21305 0.91388 0.93368 0.92997 0.92305 0.91945 0.91594 0.90860 0.91846 0.90927 0.91783 0.91359 0.93294 0.89936 0.91735 0.90452 0.90585 0.91743 0.89855 0.93221 0.89739 0.91179 0.78001 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.17 37.16 0.34 -1.60 16 2 C -0.11 -1.82 3.15 -88.78 -0.28 -2.10 16 3 H 0.08 1.36 8.00 -51.93 -0.42 0.94 16 4 C 0.11 1.79 6.48 -3.05 -0.02 1.77 16 5 N -0.60 -9.79 3.15 -170.51 -0.54 -10.33 16 6 C 0.54 8.85 5.85 -10.99 -0.06 8.79 16 7 O -0.56 -10.67 16.32 5.56 0.09 -10.57 16 8 C 0.08 1.12 0.31 -132.75 -0.04 1.08 16 9 C -0.17 -2.01 7.28 37.16 0.27 -1.74 16 10 C -0.14 -1.64 8.34 37.16 0.31 -1.33 16 11 N -0.49 -6.38 2.45 -215.71 -0.53 -6.90 16 12 C 0.02 0.28 5.02 -2.19 -0.01 0.26 16 13 C -0.12 -1.42 7.02 -25.19 -0.18 -1.60 16 14 C -0.12 -1.33 7.01 -25.18 -0.18 -1.50 16 15 C 0.03 0.29 5.28 -2.18 -0.01 0.28 16 16 C 0.09 1.63 4.74 -2.53 -0.01 1.62 16 17 C 0.17 3.21 3.13 -65.78 -0.21 3.01 16 18 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 19 N -0.71 -16.58 5.28 -51.35 -0.27 -16.85 16 20 C -0.24 -6.25 9.98 -15.06 -0.15 -6.40 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 23 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 24 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.95 7.78 -51.93 -0.40 0.55 16 33 H 0.07 0.65 6.14 -51.93 -0.32 0.34 16 34 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 35 H 0.06 0.79 5.87 -51.93 -0.31 0.48 16 36 H 0.07 0.97 7.07 -51.93 -0.37 0.60 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.70 6.78 -51.93 -0.35 0.35 16 39 H 0.05 0.61 5.51 -51.93 -0.29 0.33 16 40 H 0.08 1.23 6.67 -51.93 -0.35 0.88 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.91 7.57 -51.93 -0.39 0.52 16 46 H 0.05 0.49 5.58 -51.93 -0.29 0.20 16 47 H 0.08 1.52 5.70 -51.93 -0.30 1.22 16 48 H 0.07 1.33 6.72 -51.93 -0.35 0.98 16 49 H 0.39 9.67 7.71 -40.82 -0.31 9.36 16 50 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -29.34 371.69 -8.87 -38.21 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -8.61 Total: 10.32 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.32 Total: 0.18 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.61 Total: -60.38 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.34 -8.87 -38.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054967969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.413 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds