Wall clock time and date at job start Fri Apr 10 2020 18:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.64019 * 2 1 4 4 C 1.54340 * 111.00112 * 236.92921 * 2 1 3 5 5 N 1.47029 * 107.26150 * 219.60022 * 4 2 1 6 6 C 1.34772 * 125.64364 * 178.84759 * 5 4 2 7 7 O 1.21277 * 120.00307 * 4.41185 * 6 5 4 8 8 C 1.50702 * 119.99842 * 184.40678 * 6 5 4 9 9 C 1.53000 * 109.47250 * 201.10492 * 8 6 5 10 10 C 1.53005 * 109.46887 * 81.10876 * 8 6 5 11 11 N 1.46904 * 109.47337 * 321.11075 * 8 6 5 12 12 C 1.48561 * 110.99874 * 297.87806 * 11 8 6 13 13 C 1.54370 * 104.69677 * 200.90123 * 12 11 8 14 14 C 1.54567 * 104.91727 * 23.88109 * 13 12 11 15 15 C 1.48556 * 111.00097 * 182.45824 * 11 8 6 16 16 C 1.47425 * 108.70482 * 358.58343 * 5 4 2 17 17 C 1.54912 * 104.83208 * 24.35848 * 16 5 4 18 18 H 1.08994 * 111.00669 * 81.09661 * 17 16 5 19 19 N 1.46501 * 111.00560 * 204.91966 * 17 16 5 20 20 C 1.36937 * 119.99543 * 273.54297 * 19 17 16 21 21 H 1.08002 * 120.00073 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00148 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00034 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00295 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47417 * 59.99856 * 24 22 20 26 26 H 1.48497 * 109.47021 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47112 * 299.99846 * 24 22 20 28 28 H 1.08998 * 109.47526 * 296.85222 * 1 2 3 29 29 H 1.08997 * 109.47453 * 56.85492 * 1 2 3 30 30 H 1.09003 * 109.47360 * 176.85370 * 1 2 3 31 31 H 1.09000 * 109.99316 * 100.12636 * 4 2 1 32 32 H 1.08998 * 109.77548 * 338.95137 * 4 2 1 33 33 H 1.09000 * 109.46671 * 182.71268 * 9 8 6 34 34 H 1.08996 * 109.47182 * 302.71894 * 9 8 6 35 35 H 1.08997 * 109.46992 * 62.71947 * 9 8 6 36 36 H 1.09005 * 109.46770 * 304.67065 * 10 8 6 37 37 H 1.08998 * 109.47429 * 64.66438 * 10 8 6 38 38 H 1.08990 * 109.47301 * 184.67061 * 10 8 6 39 39 H 1.09000 * 110.41032 * 319.73663 * 12 11 8 40 40 H 1.08998 * 110.41349 * 82.06176 * 12 11 8 41 41 H 1.09005 * 110.32391 * 142.80891 * 13 12 11 42 42 H 1.09006 * 110.32641 * 265.01310 * 13 12 11 43 43 H 1.09003 * 110.29900 * 241.08867 * 14 13 12 44 44 H 1.08999 * 110.32299 * 118.89417 * 14 13 12 45 45 H 1.09004 * 110.41044 * 277.81743 * 15 11 8 46 46 H 1.09007 * 110.41155 * 40.13629 * 15 11 8 47 47 H 1.08997 * 110.36541 * 143.19239 * 16 5 4 48 48 H 1.08994 * 110.36799 * 265.41001 * 16 5 4 49 49 H 0.96995 * 120.00353 * 93.54370 * 19 17 16 50 50 H 0.96994 * 120.00349 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7862 -1.2074 5 7 3.2495 -1.5469 -0.7355 6 6 4.0004 -2.3783 -1.4846 7 8 3.7828 -2.4874 -2.6727 8 6 5.1106 -3.1724 -0.8459 9 6 6.1123 -3.6032 -1.9193 10 6 4.5254 -4.4127 -0.1674 11 7 5.7929 -2.3423 0.1558 12 6 6.4186 -1.1521 -0.4759 13 6 7.5008 -0.6995 0.5276 14 6 7.8397 -1.9665 1.3455 15 6 6.9331 -3.0735 0.7659 16 6 3.4653 -1.2447 0.6912 17 6 2.0790 -0.7935 1.2151 18 1 1.4472 -1.6530 1.4388 19 7 2.2175 0.0726 2.3885 20 6 2.3128 -0.4783 3.6386 21 1 2.2863 -1.5512 3.7593 22 6 2.4445 0.3423 4.7504 23 7 2.4784 1.6497 4.6032 24 14 2.5753 -0.4092 6.4556 25 1 3.7681 -1.2916 6.5176 26 1 2.7074 0.6725 7.4644 27 1 1.3549 -1.2059 6.7404 28 1 -0.3634 0.4642 0.9168 29 1 -0.3634 0.5619 -0.8604 30 1 -0.3634 -1.0261 -0.0564 31 1 2.3848 -0.0959 -1.9952 32 1 1.3216 -1.4700 -1.5824 33 1 6.8894 -4.2180 -1.4651 34 1 5.5963 -4.1787 -2.6878 35 1 6.5648 -2.7196 -2.3694 36 1 3.7521 -4.1098 0.5386 37 1 4.0916 -5.0690 -0.9218 38 1 5.3154 -4.9428 0.3644 39 1 6.8731 -1.4225 -1.4290 40 1 5.6789 -0.3643 -0.6184 41 1 8.3833 -0.3420 -0.0030 42 1 7.1091 0.0803 1.1808 43 1 7.6151 -1.8070 2.4002 44 1 8.8893 -2.2307 1.2168 45 1 6.5812 -3.7316 1.5604 46 1 7.4669 -3.6463 0.0075 47 1 3.7993 -2.1364 1.2216 48 1 4.1944 -0.4423 0.8029 49 1 2.2416 1.0362 2.2800 50 1 2.5708 2.2231 5.3800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054967969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:09 Heat of formation + Delta-G solvation = -22.093588 kcal Electronic energy + Delta-G solvation = -28305.073074 eV Core-core repulsion = 24753.091238 eV Total energy + Delta-G solvation = -3551.981835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.89676 -39.84740 -38.80548 -35.80437 -35.31861 -33.78352 -32.42613 -30.33136 -29.80125 -29.02877 -28.46725 -27.47426 -25.83524 -24.47297 -22.96219 -22.06737 -21.25929 -21.13116 -19.56676 -19.03977 -18.37518 -17.36913 -17.02591 -16.65079 -16.36996 -16.06872 -15.50614 -15.32006 -15.10168 -14.63119 -14.57601 -14.38520 -14.29192 -14.11418 -13.91983 -13.44003 -13.31826 -13.05279 -12.97073 -12.88293 -12.81822 -12.75826 -12.63664 -12.47626 -12.26958 -12.21989 -12.16278 -12.03217 -11.95862 -11.93339 -11.65094 -11.33191 -11.22870 -10.91723 -10.73251 -9.61296 -9.35344 -8.93019 -7.88152 -5.16455 1.52377 1.53623 1.54108 1.59681 2.04039 2.61423 2.88410 3.32708 3.44706 3.65347 3.70226 3.82544 3.88214 3.97114 3.99787 4.04051 4.13101 4.22423 4.31301 4.48005 4.52830 4.57010 4.58871 4.60404 4.63990 4.66795 4.73432 4.78230 4.81244 4.87955 4.96872 4.98586 5.02025 5.09882 5.11152 5.18748 5.20454 5.25819 5.29711 5.31655 5.36876 5.41775 5.50203 5.61286 5.85597 5.94553 6.32386 6.58481 7.13377 7.40346 8.12295 8.37247 9.34806 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.005541 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.613305 B = 5051.709260 C = 6475.379027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.074 0.926 4 C 0.116 3.884 5 N -0.601 5.601 6 C 0.536 3.464 7 O -0.587 6.587 8 C 0.085 3.915 9 C -0.162 4.162 10 C -0.132 4.132 11 N -0.502 5.502 12 C 0.023 3.977 13 C -0.119 4.119 14 C -0.119 4.119 15 C 0.027 3.973 16 C 0.118 3.882 17 C 0.165 3.835 18 H 0.056 0.944 19 N -0.718 5.718 20 C -0.233 4.233 21 H 0.076 0.924 22 C -0.068 4.068 23 N -0.968 5.968 24 Si 0.965 3.035 25 H -0.278 1.278 26 H -0.300 1.300 27 H -0.280 1.280 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.053 0.947 49 H 0.375 0.625 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 -10.052 -10.958 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 H 0.093 0.907 4 C -0.006 4.006 5 N -0.332 5.332 6 C 0.325 3.675 7 O -0.468 6.468 8 C -0.008 4.008 9 C -0.220 4.220 10 C -0.190 4.190 11 N -0.227 5.227 12 C -0.104 4.104 13 C -0.157 4.157 14 C -0.157 4.157 15 C -0.100 4.100 16 C -0.007 4.007 17 C 0.054 3.946 18 H 0.074 0.926 19 N -0.357 5.357 20 C -0.364 4.364 21 H 0.093 0.907 22 C -0.260 4.260 23 N -0.618 5.618 24 Si 0.794 3.206 25 H -0.204 1.204 26 H -0.226 1.226 27 H -0.206 1.206 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.071 0.929 49 H 0.207 0.793 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.786 -10.133 -11.067 16.905 hybrid contribution 0.443 0.373 0.403 0.706 sum 8.229 -9.760 -10.664 16.634 Atomic orbital electron populations 1.21607 0.92678 1.02222 1.01995 1.22367 0.97391 0.98979 0.93539 0.90724 1.21989 0.87691 0.94526 0.96436 1.48492 1.29233 1.42879 1.12574 1.20523 0.82821 0.78767 0.85423 1.90635 1.72132 1.67717 1.16302 1.21324 0.92887 0.93856 0.92739 1.22246 0.99157 1.02163 0.98482 1.21809 1.02075 0.94441 1.00627 1.65892 1.24724 1.05883 1.26190 1.23224 0.96594 0.93352 0.97266 1.22275 0.97839 0.98274 0.97320 1.22309 0.99887 0.93819 0.99658 1.23303 0.90663 0.96748 0.99246 1.23018 0.98474 1.00907 0.78306 1.21615 0.93660 0.93117 0.86199 0.92599 1.42318 1.87159 1.04900 1.01289 1.19502 1.40224 0.91994 0.84709 0.90653 1.25412 1.03811 0.95687 1.01125 1.69794 1.59218 1.03171 1.29658 0.85343 0.78136 0.76795 0.80281 1.20411 1.22627 1.20644 0.93287 0.90959 0.92118 0.91908 0.91060 0.89021 0.91554 0.92525 0.92517 0.91245 0.89106 0.92516 0.92618 0.89781 0.92714 0.91982 0.89254 0.89533 0.91246 0.90024 0.92916 0.79258 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.17 71.98 0.66 -2.92 16 2 C -0.10 -3.27 3.15 -9.60 -0.03 -3.31 16 3 H 0.07 2.50 8.00 -2.39 -0.02 2.48 16 4 C 0.12 3.53 6.48 86.73 0.56 4.10 16 5 N -0.60 -19.37 3.15 -811.76 -2.56 -21.93 16 6 C 0.54 17.17 5.85 87.66 0.51 17.68 16 7 O -0.59 -21.89 16.32 -3.02 -0.05 -21.94 16 8 C 0.08 2.13 0.31 2.78 0.00 2.14 16 9 C -0.16 -3.48 7.28 71.98 0.52 -2.96 16 10 C -0.13 -2.90 8.34 71.98 0.60 -2.30 16 11 N -0.50 -12.55 2.45 -836.36 -2.05 -14.60 16 12 C 0.02 0.59 5.02 86.45 0.43 1.03 16 13 C -0.12 -2.67 7.02 31.59 0.22 -2.45 16 14 C -0.12 -2.33 7.01 31.60 0.22 -2.11 16 15 C 0.03 0.53 5.28 86.45 0.46 0.99 16 16 C 0.12 4.14 4.74 86.86 0.41 4.55 16 17 C 0.16 6.22 3.13 46.38 0.15 6.37 16 18 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 19 N -0.72 -34.05 5.28 -316.37 -1.67 -35.72 16 20 C -0.23 -12.21 9.98 84.03 0.84 -11.37 16 21 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 22 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 23 N -0.97 -57.27 13.06 21.65 0.28 -56.98 16 24 Si 0.96 44.69 29.55 68.60 2.03 46.72 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 2.06 7.78 -2.39 -0.02 2.04 16 33 H 0.09 1.48 6.14 -2.39 -0.01 1.46 16 34 H 0.07 1.53 7.79 -2.39 -0.02 1.51 16 35 H 0.06 1.30 5.87 -2.39 -0.01 1.28 16 36 H 0.06 1.43 7.07 -2.38 -0.02 1.41 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.58 6.78 -2.39 -0.02 1.56 16 39 H 0.06 1.35 5.51 -2.39 -0.01 1.33 16 40 H 0.06 1.70 6.67 -2.39 -0.02 1.68 16 41 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.09 1.66 7.57 -2.38 -0.02 1.64 16 46 H 0.07 1.10 5.58 -2.38 -0.01 1.09 16 47 H 0.08 2.92 5.70 -2.39 -0.01 2.90 16 48 H 0.05 2.05 6.72 -2.39 -0.02 2.04 16 49 H 0.37 19.33 7.71 -92.71 -0.71 18.62 16 50 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -63.11 371.69 2.22 -60.89 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: 0.21 Total: 37.42 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 6.03 Total: 6.15 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -5.99 Total: -129.23 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -63.11 2.22 -60.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054967969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.794 kcal (2) G-P(sol) polarization free energy of solvation -63.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds