Wall clock time and date at job start Fri Apr 10 2020 18:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47034 * 2 1 4 4 N 1.46904 * 109.47319 * 119.99462 * 2 1 3 5 5 C 1.48806 * 111.18279 * 57.66524 * 4 2 1 6 6 C 1.54940 * 103.35175 * 159.50727 * 5 4 2 7 7 C 1.54598 * 102.91744 * 322.69172 * 6 5 4 8 8 C 1.47897 * 111.00182 * 175.00073 * 4 2 1 9 9 H 1.09002 * 109.91779 * 333.71117 * 8 4 2 10 10 C 1.50701 * 109.91687 * 94.80164 * 8 4 2 11 11 O 1.21278 * 119.99956 * 359.60302 * 10 8 4 12 12 N 1.34780 * 120.00064 * 179.59445 * 10 8 4 13 13 C 1.46498 * 120.00189 * 180.02562 * 12 10 8 14 14 H 1.09000 * 110.63915 * 31.85862 * 13 12 10 15 15 C 1.54327 * 110.71986 * 268.52902 * 13 12 10 16 16 N 1.47024 * 107.26774 * 219.44234 * 15 13 12 17 17 C 1.36941 * 125.64618 * 179.20447 * 16 15 13 18 18 H 1.08005 * 119.99780 * 179.68989 * 17 16 15 19 19 C 1.38813 * 119.99913 * 359.69358 * 17 16 15 20 20 N 1.31616 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47311 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47271 * 120.00121 * 21 19 17 24 24 H 1.48501 * 109.46665 * 239.99715 * 21 19 17 25 25 C 1.47426 * 108.70449 * 358.94057 * 16 15 13 26 26 C 1.54912 * 104.83261 * 24.12870 * 25 16 15 27 27 H 1.09005 * 111.00048 * 81.10248 * 26 25 16 28 28 C 1.52996 * 111.00332 * 204.91674 * 26 25 16 29 29 H 1.09002 * 109.47072 * 299.99818 * 1 2 3 30 30 H 1.08996 * 109.47551 * 60.00131 * 1 2 3 31 31 H 1.09000 * 109.46729 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47317 * 239.99716 * 2 1 3 33 33 H 1.08999 * 109.47754 * 59.99987 * 3 2 1 34 34 H 1.09002 * 109.47240 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47074 * 299.99565 * 3 2 1 36 36 H 1.09000 * 110.52173 * 41.07325 * 5 4 2 37 37 H 1.09004 * 110.84249 * 278.09004 * 5 4 2 38 38 H 1.08992 * 110.72408 * 204.33371 * 6 5 4 39 39 H 1.08998 * 110.87461 * 81.11314 * 6 5 4 40 40 H 1.09001 * 110.30970 * 263.03939 * 7 6 5 41 41 H 1.08998 * 110.39438 * 140.91858 * 7 6 5 42 42 H 0.97006 * 119.99784 * 0.02562 * 12 10 8 43 43 H 1.08995 * 109.88184 * 100.02657 * 15 13 12 44 44 H 1.09002 * 109.88385 * 338.85664 * 15 13 12 45 45 H 0.97001 * 119.99407 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.36518 * 142.96440 * 25 16 15 47 47 H 1.08995 * 110.36673 * 265.17549 * 25 16 15 48 48 H 1.09002 * 109.46921 * 58.54367 * 28 26 25 49 49 H 1.09003 * 109.47131 * 178.54888 * 28 26 25 50 50 H 1.09001 * 109.47089 * 298.54445 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4993 -2.0849 1.2667 6 6 2.4908 -2.7915 2.2249 7 6 3.8487 -2.1564 1.8470 8 6 3.4932 -0.8172 1.1751 9 1 3.8492 -0.8126 0.1448 10 6 4.1177 0.3221 1.9387 11 8 3.4139 1.1665 2.4511 12 7 5.4582 0.4026 2.0523 13 6 6.0653 1.5098 2.7950 14 1 5.4159 1.8267 3.6112 15 6 6.3809 2.6910 1.8533 16 7 7.6765 3.2472 2.2700 17 6 8.3205 4.3005 1.6774 18 1 9.2709 4.6386 2.0633 19 6 7.7518 4.9337 0.5808 20 7 6.5938 4.5214 0.1103 21 14 8.6306 6.3700 -0.2279 22 1 9.9059 6.6351 0.4853 23 1 8.9161 6.0399 -1.6473 24 1 7.7682 7.5772 -0.1643 25 6 8.1645 2.4874 3.4353 26 6 7.4651 1.1091 3.3311 27 1 7.9835 0.4603 2.6250 28 6 7.3565 0.4440 4.7046 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.5205 -2.5487 0.2806 37 1 0.4895 -2.1021 1.6770 38 1 2.5036 -3.8661 2.0428 39 1 2.2427 -2.5808 3.2651 40 1 4.3858 -2.7989 1.1493 41 1 4.4490 -1.9839 2.7403 42 1 6.0211 -0.2726 1.6421 43 1 5.6055 3.4520 1.9405 44 1 6.4428 2.3381 0.8239 45 1 6.1966 4.9637 -0.6562 46 1 9.2468 2.3683 3.3844 47 1 7.8819 2.9891 4.3607 48 1 6.7980 1.0928 5.3793 49 1 6.8388 -0.5102 4.6064 50 1 8.3556 0.2755 5.1067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079687823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:16 Heat of formation + Delta-G solvation = -7.197476 kcal Electronic energy + Delta-G solvation = -27563.122960 eV Core-core repulsion = 24011.787069 eV Total energy + Delta-G solvation = -3551.335892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.22996 -38.48035 -37.02091 -34.59508 -33.70441 -32.52055 -30.33939 -29.91295 -29.27435 -27.57649 -26.64576 -25.58592 -23.85519 -22.74377 -21.33431 -20.55998 -20.07192 -19.82100 -19.23248 -17.06977 -16.77412 -16.36389 -15.84927 -15.06646 -14.91628 -14.58243 -14.10250 -13.73897 -13.66260 -13.42298 -13.30268 -13.05564 -12.74293 -12.70130 -12.62061 -12.23224 -11.98912 -11.87371 -11.66423 -11.49875 -11.31122 -11.30295 -11.17084 -11.00181 -10.95345 -10.84064 -10.77243 -10.69616 -10.52103 -10.29455 -9.93640 -9.88172 -9.66848 -9.22681 -8.59072 -8.35089 -8.31406 -6.79689 -5.66343 -3.01264 3.15259 3.37451 3.42048 3.47224 3.49930 4.07770 4.49897 4.50489 4.54052 4.78115 5.05776 5.06726 5.11157 5.13860 5.22678 5.35855 5.37024 5.42305 5.49107 5.53713 5.58005 5.62930 5.69153 5.74182 5.81400 5.83430 5.92413 6.01031 6.02776 6.04194 6.05107 6.10980 6.19981 6.26136 6.32436 6.39587 6.54387 6.66582 6.68946 6.81199 6.88916 7.03675 7.10601 7.61631 7.66092 7.89203 8.07043 8.29287 8.81273 9.25153 9.85809 10.51069 11.44240 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.004228 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.054246 B = 6621.265408 C = 8131.395558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 C -0.139 4.139 4 N -0.487 5.487 5 C 0.036 3.964 6 C -0.122 4.122 7 C -0.123 4.123 8 C 0.048 3.952 9 H 0.075 0.925 10 C 0.520 3.480 11 O -0.512 6.512 12 N -0.718 5.718 13 C 0.124 3.876 14 H 0.087 0.913 15 C 0.174 3.826 16 N -0.606 5.606 17 C -0.229 4.229 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.918 5.918 21 Si 0.910 3.090 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.141 3.859 26 C -0.114 4.114 27 H 0.076 0.924 28 C -0.136 4.136 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.392 0.608 43 H 0.046 0.954 44 H 0.049 0.951 45 H 0.251 0.749 46 H 0.041 0.959 47 H 0.021 0.979 48 H 0.054 0.946 49 H 0.049 0.951 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 -17.309 2.151 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 C -0.197 4.197 4 N -0.212 5.212 5 C -0.091 4.091 6 C -0.160 4.160 7 C -0.162 4.162 8 C -0.064 4.064 9 H 0.092 0.908 10 C 0.305 3.695 11 O -0.386 6.386 12 N -0.370 5.370 13 C 0.019 3.981 14 H 0.105 0.895 15 C 0.049 3.951 16 N -0.333 5.333 17 C -0.358 4.358 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.741 3.259 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.014 3.986 26 C -0.134 4.134 27 H 0.094 0.906 28 C -0.194 4.194 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.225 0.775 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.039 0.961 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.449 -16.188 2.784 18.471 hybrid contribution 1.028 0.062 -1.577 1.883 sum -7.421 -16.126 1.207 17.793 Atomic orbital electron populations 1.21840 0.94256 1.01451 1.02456 1.21825 0.95734 0.96155 0.89818 1.21840 1.01481 0.94174 1.02174 1.64485 1.03657 1.14510 1.38587 1.23266 0.99435 0.88244 0.98178 1.22466 0.94033 0.99026 1.00435 1.22406 0.98362 0.94218 1.01166 1.22330 0.90450 0.94432 0.99223 0.90763 1.20141 0.82108 0.86331 0.80962 1.90688 1.61284 1.40309 1.46315 1.45919 1.06308 1.28527 1.56203 1.22440 0.92580 0.87923 0.95184 0.89475 1.21459 0.87721 0.91064 0.94896 1.44430 1.20543 1.36119 1.32224 1.19101 1.02071 1.05739 1.08843 0.90331 1.24813 0.97197 0.99719 0.98671 1.69993 1.17474 1.42607 1.26480 0.86068 0.78583 0.82170 0.79084 1.20506 1.21837 1.21754 1.21575 0.96573 0.89163 0.91272 1.22608 0.96206 0.98018 0.96562 0.90601 1.21682 1.01123 0.99974 0.96575 0.91537 0.92255 0.93034 0.94565 0.90706 0.92643 0.92959 0.93868 0.89772 0.90912 0.90520 0.90681 0.90326 0.77489 0.93603 0.93302 0.93857 0.94112 0.96118 0.92669 0.93208 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.00 37.16 0.33 -1.21 16 2 C 0.07 0.95 2.39 -67.71 -0.16 0.79 16 3 C -0.14 -2.21 7.94 37.16 0.29 -1.92 16 4 N -0.49 -6.49 4.33 -215.79 -0.94 -7.43 16 5 C 0.04 0.36 5.33 -1.74 -0.01 0.35 16 6 C -0.12 -1.09 7.07 -24.87 -0.18 -1.27 16 7 C -0.12 -1.22 6.48 -25.37 -0.16 -1.38 16 8 C 0.05 0.63 2.37 -67.80 -0.16 0.47 16 9 H 0.07 0.95 7.65 -51.93 -0.40 0.55 16 10 C 0.52 8.84 5.57 -10.98 -0.06 8.77 16 11 O -0.51 -10.83 14.20 5.56 0.08 -10.75 16 12 N -0.72 -11.63 4.98 -52.03 -0.26 -11.89 16 13 C 0.12 2.39 2.79 -66.10 -0.18 2.21 16 14 H 0.09 1.83 7.42 -51.93 -0.39 1.44 16 15 C 0.17 4.37 5.12 -3.06 -0.02 4.35 16 16 N -0.61 -15.71 3.39 -170.07 -0.58 -16.28 16 17 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 18 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -27.65 10.31 55.49 0.57 -27.08 16 21 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C 0.14 2.90 6.70 -2.53 -0.02 2.88 16 26 C -0.11 -1.92 3.27 -88.47 -0.29 -2.21 16 27 H 0.08 1.22 8.01 -51.93 -0.42 0.81 16 28 C -0.14 -1.83 9.29 37.16 0.35 -1.49 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.48 6.90 -51.93 -0.36 0.12 16 32 H 0.04 0.44 7.96 -51.93 -0.41 0.03 16 33 H 0.07 1.35 7.56 -51.93 -0.39 0.96 16 34 H 0.05 1.01 6.23 -51.93 -0.32 0.69 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.39 8.02 -51.93 -0.42 -0.03 16 37 H 0.08 0.79 7.68 -51.93 -0.40 0.39 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.81 7.63 -51.93 -0.40 0.41 16 42 H 0.39 5.26 8.54 -40.82 -0.35 4.91 16 43 H 0.05 1.34 7.51 -51.93 -0.39 0.95 16 44 H 0.05 1.34 7.27 -51.93 -0.38 0.97 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 48 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 49 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -33.13 381.10 -10.12 -43.25 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -9.20 Total: 3.61 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.51 Total: 3.39 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -1.20 Total: -62.68 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.13 -10.12 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079687823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.049 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds