Wall clock time and date at job start Fri Apr 10 2020 18:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47034 * 2 1 4 4 N 1.46904 * 109.47319 * 119.99462 * 2 1 3 5 5 C 1.48806 * 111.18279 * 57.66524 * 4 2 1 6 6 C 1.54940 * 103.35175 * 159.50727 * 5 4 2 7 7 C 1.54598 * 102.91744 * 322.69172 * 6 5 4 8 8 C 1.47897 * 111.00182 * 175.00073 * 4 2 1 9 9 H 1.09002 * 109.91779 * 333.71117 * 8 4 2 10 10 C 1.50701 * 109.91687 * 94.80164 * 8 4 2 11 11 O 1.21278 * 119.99956 * 359.60302 * 10 8 4 12 12 N 1.34780 * 120.00064 * 179.59445 * 10 8 4 13 13 C 1.46498 * 120.00189 * 180.02562 * 12 10 8 14 14 H 1.09000 * 110.63915 * 31.85862 * 13 12 10 15 15 C 1.54327 * 110.71986 * 268.52902 * 13 12 10 16 16 N 1.47024 * 107.26774 * 219.44234 * 15 13 12 17 17 C 1.36941 * 125.64618 * 179.20447 * 16 15 13 18 18 H 1.08005 * 119.99780 * 179.68989 * 17 16 15 19 19 C 1.38813 * 119.99913 * 359.69358 * 17 16 15 20 20 N 1.31616 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47311 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47271 * 120.00121 * 21 19 17 24 24 H 1.48501 * 109.46665 * 239.99715 * 21 19 17 25 25 C 1.47426 * 108.70449 * 358.94057 * 16 15 13 26 26 C 1.54912 * 104.83261 * 24.12870 * 25 16 15 27 27 H 1.09005 * 111.00048 * 81.10248 * 26 25 16 28 28 C 1.52996 * 111.00332 * 204.91674 * 26 25 16 29 29 H 1.09002 * 109.47072 * 299.99818 * 1 2 3 30 30 H 1.08996 * 109.47551 * 60.00131 * 1 2 3 31 31 H 1.09000 * 109.46729 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47317 * 239.99716 * 2 1 3 33 33 H 1.08999 * 109.47754 * 59.99987 * 3 2 1 34 34 H 1.09002 * 109.47240 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47074 * 299.99565 * 3 2 1 36 36 H 1.09000 * 110.52173 * 41.07325 * 5 4 2 37 37 H 1.09004 * 110.84249 * 278.09004 * 5 4 2 38 38 H 1.08992 * 110.72408 * 204.33371 * 6 5 4 39 39 H 1.08998 * 110.87461 * 81.11314 * 6 5 4 40 40 H 1.09001 * 110.30970 * 263.03939 * 7 6 5 41 41 H 1.08998 * 110.39438 * 140.91858 * 7 6 5 42 42 H 0.97006 * 119.99784 * 0.02562 * 12 10 8 43 43 H 1.08995 * 109.88184 * 100.02657 * 15 13 12 44 44 H 1.09002 * 109.88385 * 338.85664 * 15 13 12 45 45 H 0.97001 * 119.99407 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.36518 * 142.96440 * 25 16 15 47 47 H 1.08995 * 110.36673 * 265.17549 * 25 16 15 48 48 H 1.09002 * 109.46921 * 58.54367 * 28 26 25 49 49 H 1.09003 * 109.47131 * 178.54888 * 28 26 25 50 50 H 1.09001 * 109.47089 * 298.54445 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4993 -2.0849 1.2667 6 6 2.4908 -2.7915 2.2249 7 6 3.8487 -2.1564 1.8470 8 6 3.4932 -0.8172 1.1751 9 1 3.8492 -0.8126 0.1448 10 6 4.1177 0.3221 1.9387 11 8 3.4139 1.1665 2.4511 12 7 5.4582 0.4026 2.0523 13 6 6.0653 1.5098 2.7950 14 1 5.4159 1.8267 3.6112 15 6 6.3809 2.6910 1.8533 16 7 7.6765 3.2472 2.2700 17 6 8.3205 4.3005 1.6774 18 1 9.2709 4.6386 2.0633 19 6 7.7518 4.9337 0.5808 20 7 6.5938 4.5214 0.1103 21 14 8.6306 6.3700 -0.2279 22 1 9.9059 6.6351 0.4853 23 1 8.9161 6.0399 -1.6473 24 1 7.7682 7.5772 -0.1643 25 6 8.1645 2.4874 3.4353 26 6 7.4651 1.1091 3.3311 27 1 7.9835 0.4603 2.6250 28 6 7.3565 0.4440 4.7046 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.5205 -2.5487 0.2806 37 1 0.4895 -2.1021 1.6770 38 1 2.5036 -3.8661 2.0428 39 1 2.2427 -2.5808 3.2651 40 1 4.3858 -2.7989 1.1493 41 1 4.4490 -1.9839 2.7403 42 1 6.0211 -0.2726 1.6421 43 1 5.6055 3.4520 1.9405 44 1 6.4428 2.3381 0.8239 45 1 6.1966 4.9637 -0.6562 46 1 9.2468 2.3683 3.3844 47 1 7.8819 2.9891 4.3607 48 1 6.7980 1.0928 5.3793 49 1 6.8388 -0.5102 4.6064 50 1 8.3556 0.2755 5.1067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079687823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:15 Heat of formation + Delta-G solvation = -30.638677 kcal Electronic energy + Delta-G solvation = -27564.139447 eV Core-core repulsion = 24011.787069 eV Total energy + Delta-G solvation = -3552.352378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43200 -39.87915 -38.51964 -35.71879 -35.35208 -34.16637 -32.18077 -30.99261 -30.21293 -29.22488 -27.79523 -27.32442 -25.45710 -23.98351 -22.41024 -21.90258 -21.51053 -21.22003 -20.49440 -18.89892 -18.20625 -17.40770 -17.32061 -16.88620 -16.25657 -15.74699 -15.56113 -15.19788 -14.97344 -14.74112 -14.65468 -14.25885 -14.09251 -14.03464 -13.72674 -13.60718 -13.35875 -13.28029 -13.05785 -12.96418 -12.90449 -12.61711 -12.43676 -12.25654 -12.15291 -12.10815 -12.03544 -11.87346 -11.87198 -11.75266 -11.63592 -11.60003 -11.45921 -10.78258 -10.59194 -9.87913 -9.32724 -8.93960 -7.86035 -5.24173 1.42502 1.44607 1.54967 1.80855 2.13795 2.47810 3.03587 3.32333 3.54358 3.63675 3.68020 3.76499 3.91733 4.04737 4.06585 4.10131 4.12409 4.20246 4.31657 4.37799 4.52024 4.61967 4.63249 4.71776 4.73661 4.76439 4.82867 4.87688 4.90563 4.93571 4.97369 5.04254 5.06533 5.07678 5.13622 5.24469 5.26644 5.31389 5.34097 5.39358 5.44287 5.50096 5.63843 5.80756 5.90546 6.14920 6.15199 6.74514 7.05432 7.47393 7.74521 8.38509 9.23179 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.004228 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.054246 B = 6621.265408 C = 8131.395558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.076 3.924 3 C -0.131 4.131 4 N -0.515 5.515 5 C 0.036 3.964 6 C -0.116 4.116 7 C -0.117 4.117 8 C 0.052 3.948 9 H 0.080 0.920 10 C 0.515 3.485 11 O -0.562 6.562 12 N -0.707 5.707 13 C 0.140 3.860 14 H 0.068 0.932 15 C 0.192 3.808 16 N -0.628 5.628 17 C -0.242 4.242 18 H 0.089 0.911 19 C -0.069 4.069 20 N -0.953 5.953 21 Si 0.980 3.020 22 H -0.260 1.260 23 H -0.290 1.290 24 H -0.296 1.296 25 C 0.132 3.868 26 C -0.093 4.093 27 H 0.092 0.908 28 C -0.127 4.127 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.021 0.979 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.409 0.591 43 H -0.016 1.016 44 H 0.016 0.984 45 H 0.243 0.757 46 H 0.056 0.944 47 H 0.023 0.977 48 H 0.046 0.954 49 H 0.070 0.930 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 -20.553 2.340 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.033 4.033 3 C -0.189 4.189 4 N -0.240 5.240 5 C -0.090 4.090 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.060 4.060 9 H 0.098 0.902 10 C 0.301 3.699 11 O -0.439 6.439 12 N -0.360 5.360 13 C 0.034 3.966 14 H 0.086 0.914 15 C 0.065 3.935 16 N -0.355 5.355 17 C -0.371 4.371 18 H 0.106 0.894 19 C -0.262 4.262 20 N -0.602 5.602 21 Si 0.808 3.192 22 H -0.184 1.184 23 H -0.217 1.217 24 H -0.224 1.224 25 C 0.007 3.993 26 C -0.113 4.113 27 H 0.111 0.889 28 C -0.185 4.185 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.246 0.754 43 H 0.002 0.998 44 H 0.034 0.966 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.040 0.960 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.490 -19.490 2.998 21.094 hybrid contribution 0.732 1.143 -1.599 2.098 sum -6.758 -18.346 1.399 19.602 Atomic orbital electron populations 1.21788 0.92466 1.02864 1.02185 1.21790 0.97097 0.93828 0.90536 1.21744 0.99169 0.96932 1.01042 1.64395 1.03794 1.16976 1.38868 1.23373 0.99888 0.86249 0.99526 1.22484 0.92813 1.00612 0.99494 1.22459 0.99244 0.92433 1.01435 1.22325 0.90482 0.94272 0.98939 0.90249 1.21053 0.81868 0.86755 0.80192 1.90668 1.62363 1.42389 1.48506 1.45762 1.06598 1.27759 1.55839 1.21959 0.94186 0.87093 0.93379 0.91402 1.21071 0.86134 0.91513 0.94747 1.44757 1.20767 1.36347 1.33609 1.19572 1.02404 1.06334 1.08768 0.89363 1.25724 0.98038 1.02714 0.99709 1.70262 1.19206 1.43949 1.26761 0.84989 0.77964 0.78336 0.77938 1.18414 1.21721 1.22382 1.21855 0.97728 0.90560 0.89202 1.22530 0.93182 0.96412 0.99157 0.88929 1.21633 1.02855 1.00243 0.93735 0.93157 0.91218 0.90692 0.93121 0.93874 0.95937 0.91943 0.92038 0.89215 0.87814 0.91618 0.87688 0.90625 0.75445 0.99758 0.96561 0.94737 0.92613 0.95966 0.93463 0.91088 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.00 71.98 0.65 -2.14 16 2 C 0.08 1.94 2.39 44.91 0.11 2.05 16 3 C -0.13 -4.47 7.94 71.98 0.57 -3.90 16 4 N -0.51 -13.34 4.33 -836.64 -3.63 -16.97 16 5 C 0.04 0.62 5.33 86.60 0.46 1.08 16 6 C -0.12 -1.69 7.07 31.80 0.22 -1.47 16 7 C -0.12 -1.97 6.48 31.47 0.20 -1.77 16 8 C 0.05 1.33 2.37 44.31 0.10 1.43 16 9 H 0.08 1.94 7.65 -2.39 -0.02 1.92 16 10 C 0.51 18.04 5.57 87.66 0.49 18.53 16 11 O -0.56 -25.41 14.20 -3.02 -0.04 -25.45 16 12 N -0.71 -23.18 4.98 -436.91 -2.17 -25.36 16 13 C 0.14 5.59 2.79 46.18 0.13 5.72 16 14 H 0.07 2.99 7.42 -2.39 -0.02 2.97 16 15 C 0.19 10.24 5.12 86.73 0.44 10.69 16 16 N -0.63 -33.55 3.39 -691.97 -2.35 -35.90 16 17 C -0.24 -13.99 10.28 84.03 0.86 -13.12 16 18 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 19 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 20 N -0.95 -60.72 10.31 21.65 0.22 -60.50 16 21 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 24 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 25 C 0.13 5.35 6.70 86.86 0.58 5.93 16 26 C -0.09 -2.99 3.27 -9.40 -0.03 -3.03 16 27 H 0.09 2.72 8.01 -2.38 -0.02 2.70 16 28 C -0.13 -3.04 9.29 71.98 0.67 -2.37 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.19 6.90 -2.39 -0.02 1.18 16 32 H 0.05 1.16 7.96 -2.39 -0.02 1.14 16 33 H 0.04 1.70 7.56 -2.39 -0.02 1.69 16 34 H 0.02 0.87 6.23 -2.39 -0.01 0.86 16 35 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.06 0.86 8.02 -2.39 -0.02 0.84 16 37 H 0.09 1.44 7.68 -2.38 -0.02 1.43 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.34 7.63 -2.39 -0.02 1.32 16 42 H 0.41 10.50 8.54 -92.70 -0.79 9.71 16 43 H -0.02 -1.02 7.51 -2.39 -0.02 -1.04 16 44 H 0.02 0.96 7.27 -2.39 -0.02 0.94 16 45 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.02 0.91 8.04 -2.39 -0.02 0.89 16 48 H 0.05 1.22 8.11 -2.39 -0.02 1.20 16 49 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -79.38 381.10 0.10 -79.28 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.11 Total: 21.55 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 5.93 Total: 14.00 kcal Atomic # 7 Polarization: -130.80 SS G_CDS: -7.93 Total: -138.73 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.04 Total: -25.45 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -79.38 0.10 -79.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079687823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.640 kcal (2) G-P(sol) polarization free energy of solvation -79.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds