Wall clock time and date at job start Fri Apr 10 2020 18:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47213 * 2 1 4 4 N 1.46904 * 109.46853 * 179.97438 * 3 2 1 5 5 C 1.48531 * 110.99997 * 52.60769 * 4 3 2 6 6 C 1.54935 * 103.22803 * 159.71994 * 5 4 3 7 7 C 1.54598 * 102.91901 * 322.58264 * 6 5 4 8 8 C 1.47903 * 110.99666 * 169.99757 * 4 3 2 9 9 H 1.08999 * 110.08349 * 333.60376 * 8 4 3 10 10 C 1.50704 * 109.91675 * 94.80311 * 8 4 3 11 11 O 1.21283 * 119.99835 * 359.04491 * 10 8 4 12 12 N 1.34773 * 120.00078 * 179.04469 * 10 8 4 13 13 C 1.46500 * 119.99862 * 180.02562 * 12 10 8 14 14 H 1.09001 * 110.91592 * 37.44459 * 13 12 10 15 15 C 1.54906 * 111.00527 * 273.54618 * 13 12 10 16 16 N 1.47421 * 104.83194 * 204.91940 * 15 13 12 17 17 C 1.36938 * 125.64902 * 204.09053 * 16 15 13 18 18 H 1.08001 * 120.00413 * 163.18599 * 17 16 15 19 19 C 1.38817 * 119.99907 * 343.18757 * 17 16 15 20 20 N 1.31620 * 119.99629 * 331.96625 * 19 17 16 21 21 Si 1.86798 * 119.99924 * 151.96856 * 19 17 16 22 22 H 1.48503 * 109.46918 * 269.99738 * 21 19 17 23 23 H 1.48497 * 109.47281 * 29.99846 * 21 19 17 24 24 H 1.48501 * 109.47032 * 150.00113 * 21 19 17 25 25 C 1.47026 * 108.70638 * 24.35227 * 16 15 13 26 26 C 1.54333 * 107.26318 * 358.58643 * 25 16 15 27 27 H 1.09003 * 110.51704 * 96.44888 * 26 25 16 28 28 C 1.52996 * 111.00290 * 219.59971 * 26 25 16 29 29 H 1.08998 * 109.46976 * 60.00350 * 1 2 3 30 30 H 1.09006 * 109.47346 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47364 * 300.00010 * 1 2 3 32 32 H 1.09002 * 109.46911 * 239.99731 * 2 1 3 33 33 H 1.09007 * 109.46590 * 120.00105 * 2 1 3 34 34 H 1.09000 * 109.46963 * 59.99745 * 3 2 1 35 35 H 1.08998 * 109.46864 * 299.99719 * 3 2 1 36 36 H 1.09000 * 110.67165 * 41.27734 * 5 4 3 37 37 H 1.09010 * 110.80784 * 278.21830 * 5 4 3 38 38 H 1.08995 * 110.72418 * 204.22496 * 6 5 4 39 39 H 1.08999 * 110.87664 * 81.00963 * 6 5 4 40 40 H 1.09007 * 110.30691 * 263.04115 * 7 6 5 41 41 H 1.09002 * 110.31015 * 140.87525 * 7 6 5 42 42 H 0.96996 * 120.00020 * 0.02562 * 12 10 8 43 43 H 1.08993 * 110.37109 * 86.07823 * 15 13 12 44 44 H 1.09001 * 110.36213 * 323.75277 * 15 13 12 45 45 H 0.96995 * 120.00466 * 353.96430 * 20 19 17 46 46 H 1.08995 * 109.88283 * 118.12954 * 25 16 15 47 47 H 1.08996 * 109.88163 * 239.29792 * 25 16 15 48 48 H 1.09004 * 109.47274 * 173.77998 * 28 26 25 49 49 H 1.08993 * 109.47531 * 293.78130 * 28 26 25 50 50 H 1.09004 * 109.46864 * 53.78409 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0418 0.6001 -1.1007 6 6 5.4897 1.1222 -1.2778 7 6 5.3387 2.6439 -1.0500 8 6 4.0392 2.8022 -0.2392 9 1 3.3175 3.3908 -0.8055 10 6 4.3334 3.4777 1.0754 11 8 4.1094 2.8996 2.1178 12 7 4.8454 4.7243 1.0928 13 6 5.1319 5.3807 2.3708 14 1 5.5173 4.6658 3.0977 15 6 3.8763 6.1053 2.9166 16 7 4.4043 7.1692 3.7899 17 6 3.7312 7.7576 4.8272 18 1 4.2732 8.3216 5.5719 19 6 2.3522 7.6292 4.9216 20 7 1.6311 7.4602 3.8336 21 14 1.5202 7.6963 6.5927 22 1 1.4374 6.3263 7.1598 23 1 2.3098 8.5626 7.5044 24 1 0.1518 8.2533 6.4423 25 6 5.7709 7.4982 3.3589 26 6 6.1164 6.5647 2.1795 27 1 5.9354 7.0668 1.2290 28 6 7.5659 6.0832 2.2677 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.4645 0.7496 -2.0132 37 1 4.0444 -0.4523 -0.8168 38 1 5.8532 0.9172 -2.2847 39 1 6.1542 0.6847 -0.5328 40 1 5.2545 3.1628 -2.0049 41 1 6.1872 3.0276 -0.4835 42 1 5.0242 5.1868 0.2592 43 1 3.2592 5.4144 3.4909 44 1 3.3016 6.5374 2.0974 45 1 2.0506 7.5127 2.9606 46 1 5.8176 8.5385 3.0368 47 1 6.4688 7.3302 4.1790 48 1 7.7507 5.3424 1.4897 49 1 8.2389 6.9295 2.1307 50 1 7.7408 5.6344 3.2455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079805606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:25 Heat of formation + Delta-G solvation = -16.620137 kcal Electronic energy + Delta-G solvation = -27030.773482 eV Core-core repulsion = 23479.028993 eV Total energy + Delta-G solvation = -3551.744489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.23222 -38.63858 -37.24030 -34.68759 -34.00034 -32.74636 -30.92431 -30.32122 -29.80838 -27.54841 -25.61275 -25.47392 -23.88077 -22.53424 -21.98750 -20.46435 -20.32607 -20.09479 -19.34231 -17.52755 -17.01221 -16.39036 -16.02973 -15.34235 -15.07851 -14.66311 -14.22541 -13.87966 -13.82377 -13.64169 -13.45333 -13.20223 -13.07179 -12.99266 -12.89006 -12.63044 -12.39201 -11.94731 -11.79804 -11.63480 -11.51283 -11.46497 -11.35416 -11.01015 -10.94929 -10.79620 -10.71603 -10.60834 -10.59453 -10.40024 -10.04555 -9.95021 -9.54764 -9.42617 -8.54486 -8.44444 -8.34816 -6.89412 -6.04950 -3.09732 2.99152 3.22583 3.55727 3.60646 3.74764 3.96509 4.39003 4.44750 4.64384 4.69442 4.88585 4.93239 4.95216 5.02003 5.08993 5.22107 5.23419 5.31974 5.32366 5.35728 5.41300 5.48241 5.54764 5.58472 5.64257 5.68784 5.69540 5.81267 5.83802 5.91583 5.92231 5.95537 6.04381 6.10241 6.12518 6.16445 6.27169 6.34073 6.62235 6.69404 6.70744 6.86615 6.92802 7.06051 7.16334 7.84670 7.87934 8.52957 8.64561 9.06641 9.86507 10.40988 11.27418 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.004130 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.175206 B = 6778.100709 C = 8653.413248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.047 3.953 4 N -0.491 5.491 5 C 0.036 3.964 6 C -0.123 4.123 7 C -0.123 4.123 8 C 0.048 3.952 9 H 0.077 0.923 10 C 0.519 3.481 11 O -0.512 6.512 12 N -0.721 5.721 13 C 0.133 3.867 14 H 0.092 0.908 15 C 0.142 3.858 16 N -0.602 5.602 17 C -0.338 4.338 18 H 0.066 0.934 19 C -0.023 4.023 20 N -0.915 5.915 21 Si 1.066 2.934 22 H -0.292 1.292 23 H -0.292 1.292 24 H -0.290 1.290 25 C 0.141 3.859 26 C -0.110 4.110 27 H 0.074 0.926 28 C -0.136 4.136 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.393 0.607 43 H 0.054 0.946 44 H 0.025 0.975 45 H 0.268 0.732 46 H 0.025 0.975 47 H 0.029 0.971 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.172 -12.280 -15.165 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.081 4.081 4 N -0.215 5.215 5 C -0.092 4.092 6 C -0.161 4.161 7 C -0.161 4.161 8 C -0.064 4.064 9 H 0.095 0.905 10 C 0.303 3.697 11 O -0.385 6.385 12 N -0.373 5.373 13 C 0.028 3.972 14 H 0.110 0.890 15 C 0.015 3.985 16 N -0.329 5.329 17 C -0.466 4.466 18 H 0.084 0.916 19 C -0.225 4.225 20 N -0.556 5.556 21 Si 0.896 3.104 22 H -0.220 1.220 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.015 3.985 26 C -0.129 4.129 27 H 0.092 0.908 28 C -0.194 4.194 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.226 0.774 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.042 0.958 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.650 -12.998 -12.982 19.219 hybrid contribution 1.182 0.930 -2.013 2.512 sum 6.831 -12.068 -14.995 20.424 Atomic orbital electron populations 1.21739 0.95474 1.01654 1.02092 1.21557 0.95754 0.96097 1.02465 1.22398 0.86726 0.97597 1.01337 1.64393 1.08221 1.06144 1.42784 1.23252 0.94675 0.98721 0.92548 1.22482 0.96967 0.94717 1.01892 1.22408 0.96393 0.97658 0.99650 1.22359 0.97910 0.91993 0.94181 0.90538 1.20272 0.77467 0.81154 0.90851 1.90718 1.50001 1.64100 1.33657 1.45903 1.66190 1.16000 1.09185 1.22330 0.96912 0.93283 0.84699 0.89000 1.21790 0.92962 0.90022 0.93726 1.44443 1.12072 1.39929 1.36444 1.19759 0.91559 1.34239 1.01053 0.91622 1.25749 0.92564 0.99717 1.04510 1.70746 1.37561 1.48856 0.98410 0.83503 0.75574 0.76468 0.74834 1.21966 1.21842 1.21651 1.21371 0.88659 0.95429 0.93037 1.22412 0.94546 0.96145 0.99833 0.90759 1.21725 0.95301 1.00553 1.01814 0.92941 0.92599 0.92258 0.92202 0.90924 0.89889 0.94895 0.93730 0.89662 0.90816 0.90474 0.90549 0.90300 0.77357 0.92726 0.95725 0.92112 0.95754 0.95304 0.93006 0.92715 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.26 5.59 -26.73 -0.15 -1.41 16 3 C 0.05 0.59 5.03 -3.82 -0.02 0.57 16 4 N -0.49 -6.40 4.53 -223.94 -1.02 -7.42 16 5 C 0.04 0.34 5.10 -1.90 -0.01 0.33 16 6 C -0.12 -1.05 7.06 -24.87 -0.18 -1.23 16 7 C -0.12 -1.14 6.47 -25.38 -0.16 -1.30 16 8 C 0.05 0.60 2.87 -67.79 -0.19 0.41 16 9 H 0.08 0.89 7.58 -51.93 -0.39 0.50 16 10 C 0.52 8.70 6.99 -10.99 -0.08 8.63 16 11 O -0.51 -11.11 16.21 5.55 0.09 -11.02 16 12 N -0.72 -11.16 5.09 -51.73 -0.26 -11.43 16 13 C 0.13 2.53 2.76 -65.78 -0.18 2.35 16 14 H 0.09 1.94 7.64 -51.93 -0.40 1.54 16 15 C 0.14 3.49 4.99 -2.53 -0.01 3.48 16 16 N -0.60 -15.84 3.29 -170.07 -0.56 -16.40 16 17 C -0.34 -9.93 10.02 -15.06 -0.15 -10.08 16 18 H 0.07 1.91 7.97 -52.49 -0.42 1.49 16 19 C -0.02 -0.70 5.09 -17.43 -0.09 -0.79 16 20 N -0.92 -28.64 12.93 55.49 0.72 -27.93 16 21 Si 1.07 26.52 30.00 -169.99 -5.10 21.42 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 25 C 0.14 2.98 6.85 -3.06 -0.02 2.96 16 26 C -0.11 -1.82 3.15 -88.78 -0.28 -2.10 16 27 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 28 C -0.14 -1.82 9.17 37.16 0.34 -1.48 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.54 6.80 -51.93 -0.35 0.18 16 33 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.03 0.38 7.82 -51.93 -0.41 -0.03 16 36 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 37 H 0.09 0.77 7.67 -51.92 -0.40 0.37 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.76 7.63 -51.93 -0.40 0.37 16 42 H 0.39 4.78 8.48 -40.82 -0.35 4.44 16 43 H 0.05 1.57 7.95 -51.93 -0.41 1.16 16 44 H 0.03 0.64 6.81 -51.93 -0.35 0.29 16 45 H 0.27 8.39 6.06 -40.82 -0.25 8.14 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.03 0.60 7.78 -51.93 -0.40 0.20 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 LS Contribution 388.25 15.07 5.85 5.85 Total: -1.00 -35.12 388.25 -10.32 -45.44 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -9.22 Total: 2.21 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -0.82 Total: -0.72 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -1.12 Total: -63.18 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 26.52 SS G_CDS: -5.10 Total: 21.42 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.12 -10.32 -45.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079805606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.817 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds