Wall clock time and date at job start Fri Apr 10 2020 18:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 110.63965 * 2 1 4 4 C 1.54328 * 111.00221 * 236.92333 * 2 1 3 5 5 N 1.47021 * 107.26732 * 219.60186 * 4 2 1 6 6 C 1.36933 * 125.65039 * 178.85061 * 5 4 2 7 7 H 1.07998 * 119.99838 * 347.82500 * 6 5 4 8 8 C 1.38811 * 120.00230 * 167.82543 * 6 5 4 9 9 N 1.31618 * 119.99685 * 326.27039 * 8 6 5 10 10 Si 1.86797 * 120.00192 * 145.99931 * 8 6 5 11 11 H 1.48506 * 109.47202 * 59.99979 * 10 8 6 12 12 H 1.48503 * 109.47177 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47386 * 299.99796 * 10 8 6 14 14 C 1.47425 * 108.70065 * 358.58833 * 5 4 2 15 15 C 1.54909 * 104.83527 * 24.35469 * 14 5 4 16 16 H 1.08994 * 111.00417 * 81.06338 * 15 14 5 17 17 N 1.46495 * 111.00646 * 204.88202 * 15 14 5 18 18 C 1.34778 * 119.99814 * 273.54401 * 17 15 14 19 19 O 1.21287 * 120.00059 * 0.02562 * 18 17 15 20 20 C 1.50705 * 120.00025 * 179.97438 * 18 17 15 21 21 C 1.52998 * 109.47192 * 180.02562 * 20 18 17 22 22 C 1.53125 * 109.52249 * 294.68614 * 21 20 18 23 23 C 1.53033 * 109.27738 * 182.44109 * 22 21 20 24 24 N 1.46847 * 109.52488 * 59.17875 * 23 22 21 25 25 C 1.46902 * 111.00087 * 174.16031 * 24 23 22 26 26 C 1.46853 * 111.19467 * 298.25334 * 24 23 22 27 27 C 1.53038 * 109.52038 * 61.74683 * 26 24 23 28 28 H 1.09004 * 109.46616 * 296.85913 * 1 2 3 29 29 H 1.08996 * 109.46545 * 56.85511 * 1 2 3 30 30 H 1.09000 * 109.47154 * 176.85540 * 1 2 3 31 31 H 1.09000 * 109.99339 * 100.12375 * 4 2 1 32 32 H 1.09008 * 109.78074 * 338.96171 * 4 2 1 33 33 H 0.96996 * 120.00111 * 353.97910 * 9 8 6 34 34 H 1.08998 * 110.36609 * 143.19796 * 14 5 4 35 35 H 1.09005 * 110.36265 * 265.51489 * 14 5 4 36 36 H 0.96997 * 120.00679 * 93.54475 * 17 15 14 37 37 H 1.09000 * 109.46979 * 300.00091 * 20 18 17 38 38 H 1.08996 * 109.47082 * 60.00043 * 20 18 17 39 39 H 1.09005 * 109.52417 * 54.87028 * 21 20 18 40 40 H 1.09000 * 109.49601 * 302.37958 * 22 21 20 41 41 H 1.08996 * 109.50394 * 62.49423 * 22 21 20 42 42 H 1.09000 * 109.46438 * 299.16042 * 23 22 21 43 43 H 1.09003 * 109.45311 * 179.18774 * 23 22 21 44 44 H 1.08998 * 109.47155 * 184.20775 * 25 24 23 45 45 H 1.09001 * 109.46850 * 304.20618 * 25 24 23 46 46 H 1.08999 * 109.47059 * 64.20401 * 25 24 23 47 47 H 1.08999 * 109.46396 * 301.72869 * 26 24 23 48 48 H 1.09000 * 109.45111 * 181.75146 * 26 24 23 49 49 H 1.09002 * 109.50283 * 180.87569 * 27 26 24 50 50 H 1.08996 * 109.54147 * 60.77830 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0832 -0.7863 -1.2073 5 7 3.2495 -1.5470 -0.7354 6 6 4.0125 -2.3917 -1.4964 7 1 3.6684 -2.6977 -2.4733 8 6 5.2283 -2.8548 -1.0123 9 7 5.9668 -2.0838 -0.2426 10 14 5.8127 -4.5749 -1.4471 11 1 5.9444 -4.6951 -2.9214 12 1 7.1309 -4.8255 -0.8108 13 1 4.8277 -5.5715 -0.9552 14 6 3.4652 -1.2447 0.6914 15 6 2.0790 -0.7934 1.2152 16 1 1.4469 -1.6529 1.4383 17 7 2.2175 0.0719 2.3891 18 6 2.3109 -0.4710 3.6192 19 8 2.2808 -1.6759 3.7541 20 6 2.4539 0.4192 4.8268 21 6 2.5394 -0.4424 6.0882 22 6 1.2142 -1.1816 6.2937 23 6 1.2843 -1.9937 7.5889 24 7 1.5435 -1.0931 8.7195 25 6 1.4800 -1.8183 9.9955 26 6 2.8333 -0.4077 8.5674 27 6 2.8094 0.4519 7.3014 28 1 -0.3633 0.4643 0.9169 29 1 -0.3632 0.5619 -0.8604 30 1 -0.3633 -1.0261 -0.0564 31 1 2.3849 -0.0960 -1.9951 32 1 1.3216 -1.4701 -1.5824 33 1 5.7053 -1.1632 -0.0845 34 1 3.7993 -2.1364 1.2217 35 1 4.1930 -0.4409 0.8030 36 1 2.2419 1.0356 2.2812 37 1 3.3611 1.0161 4.7328 38 1 1.5898 1.0799 4.8955 39 1 3.3481 -1.1655 5.9814 40 1 0.4011 -0.4588 6.3609 41 1 1.0373 -1.8521 5.4528 42 1 2.0888 -2.7255 7.5157 43 1 0.3371 -2.5098 7.7455 44 1 1.6014 -1.1151 10.8194 45 1 0.5146 -2.3167 10.0824 46 1 2.2769 -2.5611 10.0313 47 1 3.6305 -1.1469 8.4895 48 1 3.0110 0.2281 9.4347 49 1 3.7722 0.9483 7.1804 50 1 2.0218 1.2007 7.3840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080558961.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:32 Heat of formation + Delta-G solvation = -50.749967 kcal Electronic energy + Delta-G solvation = -26630.800886 eV Core-core repulsion = 23077.576416 eV Total energy + Delta-G solvation = -3553.224469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.27196 -40.02023 -39.09113 -35.89107 -35.34183 -34.41531 -32.19531 -31.76202 -30.79919 -29.26529 -27.27026 -26.48939 -25.21498 -24.11515 -23.22941 -22.20594 -21.66357 -20.89636 -20.57322 -19.61984 -17.96041 -17.49211 -16.74002 -16.56835 -16.28340 -16.01186 -15.80083 -15.62730 -15.44840 -15.32855 -14.78908 -14.54836 -14.50143 -14.11595 -14.03695 -13.78745 -13.40724 -13.29758 -13.11624 -13.01411 -12.76743 -12.72973 -12.50306 -12.39050 -12.18720 -12.10557 -12.06899 -11.93757 -11.69354 -11.63881 -11.58115 -11.48171 -11.21892 -10.67244 -10.50741 -10.05263 -9.33644 -9.09449 -8.45093 -5.33994 1.50469 1.60279 1.69238 1.78657 2.15716 2.59425 2.99846 3.09555 3.48788 3.52296 3.71033 3.81428 3.83740 3.87343 3.95870 4.07538 4.23374 4.30328 4.33405 4.43237 4.45834 4.50149 4.52237 4.60616 4.65008 4.66790 4.77353 4.78329 4.87715 4.91271 4.92340 4.94124 4.96504 4.98990 5.02477 5.08941 5.11225 5.16802 5.19976 5.33062 5.38483 5.50178 5.56449 5.62902 6.08515 6.13397 6.23448 6.61762 6.81757 7.34681 7.64816 8.22976 8.89332 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.003241 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.573916 B = 8636.068582 C = 9716.962073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.090 4.090 3 H 0.099 0.901 4 C 0.132 3.868 5 N -0.626 5.626 6 C -0.356 4.356 7 H 0.065 0.935 8 C -0.076 4.076 9 N -0.934 5.934 10 Si 1.107 2.893 11 H -0.266 1.266 12 H -0.291 1.291 13 H -0.287 1.287 14 C 0.152 3.848 15 C 0.150 3.850 16 H 0.071 0.929 17 N -0.706 5.706 18 C 0.503 3.497 19 O -0.583 6.583 20 C -0.123 4.123 21 C -0.073 4.073 22 C -0.110 4.110 23 C 0.058 3.942 24 N -0.548 5.548 25 C 0.023 3.977 26 C 0.052 3.948 27 C -0.104 4.104 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.026 0.974 32 H 0.033 0.967 33 H 0.253 0.747 34 H -0.001 1.001 35 H 0.006 0.994 36 H 0.416 0.584 37 H 0.114 0.886 38 H 0.128 0.872 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.013 0.987 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.092 0.908 49 H 0.082 0.918 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.458 10.666 16.923 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.110 4.110 3 H 0.117 0.883 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.484 4.484 7 H 0.083 0.917 8 C -0.273 4.273 9 N -0.576 5.576 10 Si 0.931 3.069 11 H -0.191 1.191 12 H -0.217 1.217 13 H -0.214 1.214 14 C 0.025 3.975 15 C 0.043 3.957 16 H 0.090 0.910 17 N -0.359 5.359 18 C 0.292 3.708 19 O -0.462 6.462 20 C -0.162 4.162 21 C -0.092 4.092 22 C -0.148 4.148 23 C -0.070 4.070 24 N -0.273 5.273 25 C -0.125 4.125 26 C -0.076 4.076 27 C -0.141 4.141 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.017 0.983 35 H 0.024 0.976 36 H 0.254 0.746 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.627 9.000 17.201 22.629 hybrid contribution 0.074 0.351 -0.733 0.816 sum -11.554 9.351 16.468 22.184 Atomic orbital electron populations 1.21689 0.91400 1.02112 1.03386 1.22359 0.97880 0.98955 0.91780 0.88314 1.21617 0.88774 0.93120 0.95756 1.44746 1.32585 1.52172 1.05828 1.19953 1.02116 1.23687 1.02683 0.91710 1.27065 0.92680 1.07880 0.99657 1.70905 1.36374 1.07444 1.42846 0.82984 0.75195 0.71994 0.76728 1.19141 1.21656 1.21419 1.21584 0.95200 0.95793 0.84909 1.21843 0.94968 0.93577 0.85327 0.91048 1.45795 1.74360 1.10628 1.05074 1.21591 0.74480 0.89295 0.85476 1.90688 1.51123 1.17773 1.86657 1.21763 1.06635 0.97992 0.89832 1.20921 0.97651 0.96786 0.93876 1.21654 0.97538 0.99489 0.96103 1.22038 1.00115 0.93724 0.91089 1.62037 1.32477 1.30302 1.02455 1.22422 1.01222 0.97666 0.91230 1.22173 0.88846 0.97087 0.99514 1.21618 1.03230 0.97533 0.91743 0.90569 0.90385 0.93490 0.95617 0.94921 0.93725 0.98264 0.97606 0.74618 0.86808 0.85443 0.93987 0.90501 0.92470 0.96858 0.90434 0.89914 0.90872 0.96271 0.96304 0.88933 0.89968 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.17 71.99 0.66 -2.28 16 2 C -0.09 -2.77 3.15 -9.60 -0.03 -2.80 16 3 H 0.10 2.60 8.00 -2.39 -0.02 2.58 16 4 C 0.13 5.47 6.85 86.73 0.59 6.06 16 5 N -0.63 -33.64 3.33 -691.98 -2.30 -35.94 16 6 C -0.36 -21.36 9.97 84.03 0.84 -20.52 16 7 H 0.07 3.82 8.02 -2.91 -0.02 3.80 16 8 C -0.08 -4.63 4.96 84.86 0.42 -4.21 16 9 N -0.93 -60.45 12.86 21.65 0.28 -60.17 16 10 Si 1.11 54.31 30.03 68.60 2.06 56.37 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 14 C 0.15 7.74 5.02 86.85 0.44 8.17 16 15 C 0.15 5.57 2.76 46.39 0.13 5.70 16 16 H 0.07 3.00 7.64 -2.39 -0.02 2.98 16 17 N -0.71 -20.05 5.23 -435.96 -2.28 -22.33 16 18 C 0.50 15.28 7.56 87.66 0.66 15.95 16 19 O -0.58 -23.98 13.74 -3.05 -0.04 -24.03 16 20 C -0.12 -2.38 5.18 29.85 0.15 -2.23 16 21 C -0.07 -1.62 1.90 -10.71 -0.02 -1.64 16 22 C -0.11 -2.61 5.09 30.65 0.16 -2.46 16 23 C 0.06 1.32 5.46 86.32 0.47 1.79 16 24 N -0.55 -10.53 4.91 -922.57 -4.53 -15.06 16 25 C 0.02 0.35 9.59 127.69 1.22 1.57 16 26 C 0.05 0.90 5.46 86.32 0.47 1.37 16 27 C -0.10 -1.66 5.38 30.65 0.16 -1.50 16 28 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.19 8.08 -2.39 -0.02 1.17 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.03 1.33 7.78 -2.38 -0.02 1.31 16 33 H 0.25 16.57 6.43 -92.71 -0.60 15.97 16 34 H 0.00 -0.07 7.81 -2.39 -0.02 -0.09 16 35 H 0.01 0.33 7.02 -2.38 -0.02 0.32 16 36 H 0.42 8.31 8.52 -92.71 -0.79 7.52 16 37 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.04 1.22 7.95 -2.38 -0.02 1.20 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.73 6.04 -2.39 -0.01 1.72 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 44 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 46 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.09 1.27 8.12 -2.39 -0.02 1.25 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -80.32 384.23 -0.21 -80.53 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.28 Total: 17.64 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 6.33 Total: 2.99 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -8.83 Total: -133.50 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.04 Total: -24.03 kcal Atomic # 14 Polarization: 54.31 SS G_CDS: 2.06 Total: 56.37 kcal Total: -80.32 -0.21 -80.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080558961.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.776 kcal (2) G-P(sol) polarization free energy of solvation -80.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds