Wall clock time and date at job start Fri Apr 10 2020 18:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47595 * 2 1 4 4 C 1.46846 * 111.00082 * 71.66983 * 3 2 1 5 5 C 1.53043 * 109.52068 * 185.84353 * 4 3 2 6 6 C 1.53125 * 109.27571 * 300.81954 * 5 4 3 7 7 C 1.53116 * 109.16138 * 57.65954 * 6 5 4 8 8 C 1.46844 * 111.00167 * 195.88376 * 3 2 1 9 9 H 1.08995 * 109.46140 * 294.17271 * 8 3 2 10 10 C 1.50707 * 109.45376 * 54.14855 * 8 3 2 11 11 O 1.21276 * 119.99930 * 28.88121 * 10 8 3 12 12 N 1.34773 * 119.99803 * 208.88217 * 10 8 3 13 13 C 1.46498 * 119.99942 * 179.97438 * 12 10 8 14 14 H 1.08999 * 110.88740 * 31.11596 * 13 12 10 15 15 C 1.54910 * 111.00544 * 267.19567 * 13 12 10 16 16 N 1.47422 * 104.83615 * 204.91371 * 15 13 12 17 17 C 1.36936 * 125.65343 * 204.10925 * 16 15 13 18 18 H 1.08000 * 120.00114 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99584 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00092 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99537 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47536 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46931 * 120.00293 * 21 19 17 24 24 H 1.48498 * 109.47045 * 240.00136 * 21 19 17 25 25 C 1.47022 * 108.70050 * 24.13274 * 16 15 13 26 26 C 1.54324 * 107.27083 * 358.93601 * 25 16 15 27 27 H 1.09003 * 110.87237 * 96.24658 * 26 25 16 28 28 C 1.53002 * 110.72372 * 219.44546 * 26 25 16 29 29 H 1.09007 * 109.47045 * 300.00669 * 1 2 3 30 30 H 1.08998 * 109.46997 * 59.99900 * 1 2 3 31 31 H 1.08993 * 109.47342 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47153 * 239.99350 * 2 1 3 33 33 H 1.08998 * 109.46997 * 120.00099 * 2 1 3 34 34 H 1.08998 * 109.46489 * 305.85785 * 4 3 2 35 35 H 1.08995 * 109.45978 * 65.83867 * 4 3 2 36 36 H 1.08998 * 109.50084 * 180.88430 * 5 4 3 37 37 H 1.08993 * 109.50542 * 60.76019 * 5 4 3 38 38 H 1.09000 * 109.52115 * 297.74839 * 6 5 4 39 39 H 1.09001 * 109.51457 * 177.56326 * 6 5 4 40 40 H 1.08998 * 109.50182 * 62.28005 * 7 6 5 41 41 H 1.08991 * 109.50624 * 182.40093 * 7 6 5 42 42 H 0.97001 * 120.00166 * 359.97438 * 12 10 8 43 43 H 1.09000 * 110.36907 * 323.75727 * 15 13 12 44 44 H 1.09007 * 110.36758 * 86.07860 * 15 13 12 45 45 H 0.96998 * 119.99574 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.88614 * 239.52404 * 25 16 15 47 47 H 1.08994 * 110.01749 * 118.42730 * 25 16 15 48 48 H 1.08999 * 109.47163 * 173.52736 * 28 26 25 49 49 H 1.09008 * 109.46768 * 293.52627 * 28 26 25 50 50 H 1.09000 * 109.46837 * 53.52159 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7887 2.0248 1.3014 5 6 2.1760 3.5032 1.2202 6 6 3.6518 3.6184 0.8285 7 6 3.8749 2.9024 -0.5064 8 6 3.4383 1.4415 -0.3752 9 1 4.0368 0.9511 0.3925 10 6 3.6374 0.7377 -1.6929 11 8 2.7359 0.7016 -2.5033 12 7 4.8173 0.1485 -1.9706 13 6 5.0107 -0.5361 -3.2513 14 1 4.4208 -0.0643 -4.0371 15 6 4.6733 -2.0433 -3.1317 16 7 5.4521 -2.6905 -4.2031 17 6 5.1544 -3.8898 -4.7933 18 1 5.7911 -4.2807 -5.5731 19 6 4.0342 -4.6031 -4.3890 20 7 3.2580 -4.1264 -3.4390 21 14 3.6277 -6.2387 -5.1945 22 1 4.6490 -6.5496 -6.2268 23 1 3.6227 -7.3095 -4.1656 24 1 2.2885 -6.1577 -5.8311 25 6 6.6017 -1.8354 -4.5328 26 6 6.5132 -0.5828 -3.6357 27 1 7.1351 -0.6964 -2.7477 28 6 6.9115 0.6714 -4.4161 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.7348 1.9395 1.5661 35 1 2.3951 1.5319 2.0611 36 1 2.0192 3.9742 2.1906 37 1 1.5606 4.0000 0.4702 38 1 4.2700 3.1558 1.5979 39 1 3.9207 4.6699 0.7273 40 1 3.2861 3.3897 -1.2835 41 1 4.9317 2.9442 -0.7696 42 1 5.5385 0.1777 -1.3225 43 1 4.9790 -2.4243 -2.1573 44 1 3.6067 -2.2067 -3.2864 45 1 2.4750 -4.6246 -3.1569 46 1 6.5579 -1.5435 -5.5821 47 1 7.5318 -2.3680 -4.3349 48 1 6.7325 1.5538 -3.8017 49 1 7.9689 0.6175 -4.6754 50 1 6.3169 0.7364 -5.3274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080998065.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:42 Heat of formation + Delta-G solvation = -13.651383 kcal Electronic energy + Delta-G solvation = -27473.849867 eV Core-core repulsion = 23922.234113 eV Total energy + Delta-G solvation = -3551.615754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.24759 -38.44635 -37.11022 -34.38376 -33.77861 -32.63609 -31.25081 -30.34469 -29.71761 -27.76831 -25.65795 -24.77335 -24.12796 -23.21596 -21.41862 -20.67717 -20.06491 -19.83492 -19.30306 -17.03644 -16.87472 -16.21259 -15.39858 -15.09384 -14.97523 -14.66794 -14.46984 -14.06154 -13.75172 -13.55242 -13.37023 -13.16330 -13.03502 -12.85293 -12.63765 -12.40115 -12.18166 -11.78513 -11.68833 -11.61600 -11.41123 -11.21836 -11.16000 -11.07444 -10.92331 -10.79572 -10.66262 -10.54374 -10.37183 -10.28360 -9.94966 -9.76393 -9.72648 -9.19791 -8.63808 -8.38545 -8.26264 -6.81984 -5.61921 -3.05323 3.00382 3.38590 3.42193 3.47114 3.49959 3.95411 4.50957 4.64356 4.70678 4.78539 5.03723 5.08131 5.12960 5.22428 5.28974 5.32929 5.38498 5.44909 5.46694 5.54577 5.56307 5.60425 5.68377 5.75943 5.77455 5.79993 5.93118 5.97378 5.98416 6.05074 6.06186 6.17653 6.21713 6.27008 6.28618 6.39645 6.44438 6.50952 6.68141 6.84525 6.98094 7.04565 7.14091 7.49027 7.64434 7.87470 7.99211 8.39233 8.69351 9.23376 9.84656 10.47973 11.41008 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.004169 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.139542 B = 6714.035676 C = 8268.925250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.044 3.956 3 N -0.515 5.515 4 C 0.055 3.945 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.105 4.105 8 C 0.072 3.928 9 H 0.054 0.946 10 C 0.514 3.486 11 O -0.515 6.515 12 N -0.715 5.715 13 C 0.120 3.880 14 H 0.092 0.908 15 C 0.149 3.851 16 N -0.603 5.603 17 C -0.226 4.226 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.918 5.918 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.141 3.859 26 C -0.112 4.112 27 H 0.072 0.928 28 C -0.136 4.136 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.028 0.972 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.392 0.608 43 H 0.011 0.989 44 H 0.111 0.889 45 H 0.252 0.748 46 H 0.027 0.973 47 H 0.022 0.978 48 H 0.050 0.950 49 H 0.051 0.949 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 15.569 10.754 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 N -0.241 5.241 4 C -0.073 4.073 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.143 4.143 8 C -0.040 4.040 9 H 0.072 0.928 10 C 0.299 3.701 11 O -0.389 6.389 12 N -0.366 5.366 13 C 0.015 3.985 14 H 0.110 0.890 15 C 0.023 3.977 16 N -0.329 5.329 17 C -0.354 4.354 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.566 5.566 21 Si 0.744 3.256 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.015 3.985 26 C -0.131 4.131 27 H 0.091 0.909 28 C -0.194 4.194 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.225 0.775 43 H 0.029 0.971 44 H 0.129 0.871 45 H 0.062 0.938 46 H 0.045 0.955 47 H 0.040 0.960 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.059 15.611 9.789 18.457 hybrid contribution 0.741 -1.424 0.676 1.742 sum 1.800 14.187 10.465 17.721 Atomic orbital electron populations 1.21683 0.94668 1.01469 1.01868 1.22222 0.96670 0.87803 1.01660 1.61693 1.15057 1.18289 1.29028 1.22153 1.01307 0.94608 0.89233 1.21610 0.96492 0.95944 1.01547 1.21572 0.96742 1.00470 0.96823 1.21519 1.01166 0.92913 0.98745 1.21587 0.90510 0.97078 0.94844 0.92793 1.20255 0.82588 0.78775 0.88530 1.90731 1.40879 1.58640 1.48641 1.45932 1.14821 1.55943 1.19933 1.22680 0.95055 0.96303 0.84454 0.88986 1.22214 1.00770 0.84618 0.90056 1.44396 1.25459 1.20831 1.42239 1.19115 1.07290 0.94111 1.14866 0.90309 1.24809 0.97741 0.99162 0.98817 1.69813 1.16997 1.38200 1.31571 0.86009 0.77993 0.83171 0.78381 1.20510 1.21800 1.21670 1.21330 0.91605 0.89584 0.95969 1.22430 0.96059 0.95731 0.98919 0.90945 1.21735 1.00799 0.96739 1.00135 0.93444 0.91633 0.92310 0.89058 0.95336 0.90236 0.95108 0.91618 0.90879 0.92160 0.91474 0.90278 0.91150 0.77490 0.97094 0.87124 0.93762 0.95507 0.95961 0.93132 0.92947 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.96 37.16 0.37 -1.51 16 2 C 0.04 0.66 5.32 -3.83 -0.02 0.64 16 3 N -0.51 -7.08 4.21 -228.08 -0.96 -8.04 16 4 C 0.05 0.58 5.30 -3.83 -0.02 0.56 16 5 C -0.12 -1.05 6.09 -26.64 -0.16 -1.21 16 6 C -0.12 -1.01 6.00 -26.61 -0.16 -1.17 16 7 C -0.11 -1.13 5.36 -26.65 -0.14 -1.28 16 8 C 0.07 0.95 2.23 -68.87 -0.15 0.80 16 9 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 10 C 0.51 8.72 5.69 -10.98 -0.06 8.66 16 11 O -0.51 -11.06 15.01 5.56 0.08 -10.98 16 12 N -0.72 -11.45 5.20 -51.73 -0.27 -11.72 16 13 C 0.12 2.34 2.87 -65.78 -0.19 2.16 16 14 H 0.09 2.01 7.44 -51.93 -0.39 1.63 16 15 C 0.15 3.71 5.58 -2.53 -0.01 3.70 16 16 N -0.60 -15.67 3.39 -170.07 -0.58 -16.25 16 17 C -0.23 -6.39 10.27 -15.06 -0.15 -6.54 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -27.43 10.09 55.49 0.56 -26.87 16 21 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.14 2.94 6.84 -3.06 -0.02 2.92 16 26 C -0.11 -1.88 3.20 -88.79 -0.28 -2.17 16 27 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 28 C -0.14 -1.89 9.16 37.16 0.34 -1.55 16 29 H 0.05 0.54 6.65 -51.93 -0.35 0.19 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.73 5.68 -51.93 -0.29 1.44 16 33 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.08 0.80 6.49 -51.93 -0.34 0.46 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.39 5.05 8.57 -40.82 -0.35 4.70 16 43 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.11 3.24 5.87 -51.92 -0.30 2.93 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.03 0.56 7.76 -51.93 -0.40 0.15 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 50 H 0.06 0.83 8.06 -51.93 -0.42 0.42 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -32.60 380.85 -10.36 -42.96 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -9.14 Total: 4.10 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.77 Total: 3.63 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -1.25 Total: -62.88 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.60 -10.36 -42.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080998065.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.304 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds