Wall clock time and date at job start Fri Apr 10 2020 18:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47595 * 2 1 4 4 C 1.46846 * 111.00082 * 71.66983 * 3 2 1 5 5 C 1.53043 * 109.52068 * 185.84353 * 4 3 2 6 6 C 1.53125 * 109.27571 * 300.81954 * 5 4 3 7 7 C 1.53116 * 109.16138 * 57.65954 * 6 5 4 8 8 C 1.46844 * 111.00167 * 195.88376 * 3 2 1 9 9 H 1.08995 * 109.46140 * 294.17271 * 8 3 2 10 10 C 1.50707 * 109.45376 * 54.14855 * 8 3 2 11 11 O 1.21276 * 119.99930 * 28.88121 * 10 8 3 12 12 N 1.34773 * 119.99803 * 208.88217 * 10 8 3 13 13 C 1.46498 * 119.99942 * 179.97438 * 12 10 8 14 14 H 1.08999 * 110.88740 * 31.11596 * 13 12 10 15 15 C 1.54910 * 111.00544 * 267.19567 * 13 12 10 16 16 N 1.47422 * 104.83615 * 204.91371 * 15 13 12 17 17 C 1.36936 * 125.65343 * 204.10925 * 16 15 13 18 18 H 1.08000 * 120.00114 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99584 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00092 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99537 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47536 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46931 * 120.00293 * 21 19 17 24 24 H 1.48498 * 109.47045 * 240.00136 * 21 19 17 25 25 C 1.47022 * 108.70050 * 24.13274 * 16 15 13 26 26 C 1.54324 * 107.27083 * 358.93601 * 25 16 15 27 27 H 1.09003 * 110.87237 * 96.24658 * 26 25 16 28 28 C 1.53002 * 110.72372 * 219.44546 * 26 25 16 29 29 H 1.09007 * 109.47045 * 300.00669 * 1 2 3 30 30 H 1.08998 * 109.46997 * 59.99900 * 1 2 3 31 31 H 1.08993 * 109.47342 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47153 * 239.99350 * 2 1 3 33 33 H 1.08998 * 109.46997 * 120.00099 * 2 1 3 34 34 H 1.08998 * 109.46489 * 305.85785 * 4 3 2 35 35 H 1.08995 * 109.45978 * 65.83867 * 4 3 2 36 36 H 1.08998 * 109.50084 * 180.88430 * 5 4 3 37 37 H 1.08993 * 109.50542 * 60.76019 * 5 4 3 38 38 H 1.09000 * 109.52115 * 297.74839 * 6 5 4 39 39 H 1.09001 * 109.51457 * 177.56326 * 6 5 4 40 40 H 1.08998 * 109.50182 * 62.28005 * 7 6 5 41 41 H 1.08991 * 109.50624 * 182.40093 * 7 6 5 42 42 H 0.97001 * 120.00166 * 359.97438 * 12 10 8 43 43 H 1.09000 * 110.36907 * 323.75727 * 15 13 12 44 44 H 1.09007 * 110.36758 * 86.07860 * 15 13 12 45 45 H 0.96998 * 119.99574 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.88614 * 239.52404 * 25 16 15 47 47 H 1.08994 * 110.01749 * 118.42730 * 25 16 15 48 48 H 1.08999 * 109.47163 * 173.52736 * 28 26 25 49 49 H 1.09008 * 109.46768 * 293.52627 * 28 26 25 50 50 H 1.09000 * 109.46837 * 53.52159 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7887 2.0248 1.3014 5 6 2.1760 3.5032 1.2202 6 6 3.6518 3.6184 0.8285 7 6 3.8749 2.9024 -0.5064 8 6 3.4383 1.4415 -0.3752 9 1 4.0368 0.9511 0.3925 10 6 3.6374 0.7377 -1.6929 11 8 2.7359 0.7016 -2.5033 12 7 4.8173 0.1485 -1.9706 13 6 5.0107 -0.5361 -3.2513 14 1 4.4208 -0.0643 -4.0371 15 6 4.6733 -2.0433 -3.1317 16 7 5.4521 -2.6905 -4.2031 17 6 5.1544 -3.8898 -4.7933 18 1 5.7911 -4.2807 -5.5731 19 6 4.0342 -4.6031 -4.3890 20 7 3.2580 -4.1264 -3.4390 21 14 3.6277 -6.2387 -5.1945 22 1 4.6490 -6.5496 -6.2268 23 1 3.6227 -7.3095 -4.1656 24 1 2.2885 -6.1577 -5.8311 25 6 6.6017 -1.8354 -4.5328 26 6 6.5132 -0.5828 -3.6357 27 1 7.1351 -0.6964 -2.7477 28 6 6.9115 0.6714 -4.4161 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.7348 1.9395 1.5661 35 1 2.3951 1.5319 2.0611 36 1 2.0192 3.9742 2.1906 37 1 1.5606 4.0000 0.4702 38 1 4.2700 3.1558 1.5979 39 1 3.9207 4.6699 0.7273 40 1 3.2861 3.3897 -1.2835 41 1 4.9317 2.9442 -0.7696 42 1 5.5385 0.1777 -1.3225 43 1 4.9790 -2.4243 -2.1573 44 1 3.6067 -2.2067 -3.2864 45 1 2.4750 -4.6246 -3.1569 46 1 6.5579 -1.5435 -5.5821 47 1 7.5318 -2.3680 -4.3349 48 1 6.7325 1.5538 -3.8017 49 1 7.9689 0.6175 -4.6754 50 1 6.3169 0.7364 -5.3274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080998065.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:41 Heat of formation + Delta-G solvation = -36.390795 kcal Electronic energy + Delta-G solvation = -27474.835922 eV Core-core repulsion = 23922.234113 eV Total energy + Delta-G solvation = -3552.601809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50106 -39.83787 -38.56513 -35.69240 -35.21177 -34.28725 -32.33576 -32.09269 -30.72574 -29.49246 -27.42895 -25.99021 -25.27179 -24.60508 -22.58660 -22.17936 -21.60257 -21.06460 -20.50642 -18.94539 -18.25017 -17.60344 -16.93765 -16.63940 -16.28889 -15.78388 -15.56797 -15.48469 -15.29211 -14.70281 -14.48020 -14.42279 -14.32825 -14.20344 -14.09281 -13.81372 -13.58391 -13.38086 -13.04507 -12.87759 -12.80083 -12.70321 -12.63006 -12.33826 -12.16814 -12.12008 -11.96002 -11.86481 -11.75376 -11.64049 -11.54521 -11.42421 -11.20823 -10.80202 -10.56367 -9.95632 -9.28892 -8.92188 -7.79292 -5.26047 1.42881 1.45049 1.55321 1.65534 2.09997 2.47509 2.87818 3.30359 3.57537 3.67614 3.82428 3.85280 3.96121 4.02907 4.06410 4.10088 4.14517 4.21633 4.32043 4.41986 4.51979 4.55299 4.58950 4.60813 4.65488 4.72567 4.82037 4.87729 4.92411 4.96309 5.02738 5.07859 5.10285 5.12091 5.21321 5.21626 5.23767 5.28864 5.33093 5.43797 5.48634 5.49973 5.64625 5.78969 5.97265 6.16416 6.26072 6.66540 7.05328 7.36546 7.74591 8.37162 9.21285 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.004169 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.139542 B = 6714.035676 C = 8268.925250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.047 3.953 3 N -0.532 5.532 4 C 0.052 3.948 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.101 4.101 8 C 0.078 3.922 9 H 0.074 0.926 10 C 0.511 3.489 11 O -0.568 6.568 12 N -0.703 5.703 13 C 0.139 3.861 14 H 0.064 0.936 15 C 0.159 3.841 16 N -0.627 5.627 17 C -0.240 4.240 18 H 0.086 0.914 19 C -0.069 4.069 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.262 1.262 23 H -0.290 1.290 24 H -0.294 1.294 25 C 0.133 3.867 26 C -0.093 4.093 27 H 0.098 0.902 28 C -0.129 4.129 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.412 0.588 43 H -0.010 1.010 44 H 0.059 0.941 45 H 0.244 0.756 46 H 0.029 0.971 47 H 0.033 0.967 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.259 17.437 12.331 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.081 4.081 3 N -0.258 5.258 4 C -0.075 4.075 5 C -0.153 4.153 6 C -0.150 4.150 7 C -0.140 4.140 8 C -0.034 4.034 9 H 0.091 0.909 10 C 0.298 3.702 11 O -0.445 6.445 12 N -0.355 5.355 13 C 0.032 3.968 14 H 0.082 0.918 15 C 0.032 3.968 16 N -0.353 5.353 17 C -0.369 4.369 18 H 0.104 0.896 19 C -0.262 4.262 20 N -0.598 5.598 21 Si 0.809 3.191 22 H -0.186 1.186 23 H -0.217 1.217 24 H -0.222 1.222 25 C 0.008 3.992 26 C -0.113 4.113 27 H 0.116 0.884 28 C -0.186 4.186 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.248 0.752 43 H 0.007 0.993 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.047 0.953 47 H 0.051 0.949 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.233 17.513 11.386 21.137 hybrid contribution 0.077 -2.016 0.172 2.025 sum 3.310 15.497 11.558 19.613 Atomic orbital electron populations 1.21627 0.93693 1.01525 1.02222 1.22067 0.97582 0.88775 0.99633 1.61699 1.15480 1.17233 1.31384 1.22295 1.01969 0.95596 0.87596 1.21627 0.96648 0.94456 1.02610 1.21576 0.96600 1.01349 0.95488 1.21555 1.01775 0.90803 0.99824 1.21641 0.90806 0.98478 0.92478 0.90858 1.21092 0.81689 0.77985 0.89471 1.90707 1.42547 1.60591 1.50697 1.45744 1.15518 1.54996 1.19199 1.22113 0.96824 0.92485 0.85402 0.91798 1.21854 0.97757 0.88329 0.88856 1.44704 1.27361 1.20995 1.42265 1.19541 1.07329 0.95151 1.14891 0.89628 1.25708 0.97878 1.02853 0.99730 1.70130 1.17216 1.39323 1.33133 0.84966 0.77617 0.78836 0.77666 1.18598 1.21740 1.22162 1.21600 0.90076 0.90560 0.97000 1.22379 0.93856 0.95501 0.99534 0.88381 1.21687 1.02118 0.95438 0.99351 0.90658 0.93535 0.92470 0.93902 0.94392 0.89767 0.94020 0.89042 0.92102 0.90632 0.89616 0.92400 0.89276 0.75163 0.99252 0.92282 0.94637 0.95278 0.94862 0.91148 0.90266 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.96 71.98 0.72 -2.99 16 2 C 0.05 1.48 5.32 86.30 0.46 1.94 16 3 N -0.53 -14.46 4.21 -875.52 -3.69 -18.15 16 4 C 0.05 0.99 5.30 86.33 0.46 1.45 16 5 C -0.12 -1.71 6.09 30.65 0.19 -1.52 16 6 C -0.11 -1.51 6.00 30.67 0.18 -1.32 16 7 C -0.10 -1.96 5.36 30.65 0.16 -1.79 16 8 C 0.08 1.98 2.23 44.20 0.10 2.08 16 9 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 10 C 0.51 17.79 5.69 87.66 0.50 18.29 16 11 O -0.57 -26.06 15.01 -3.02 -0.05 -26.10 16 12 N -0.70 -22.46 5.20 -435.97 -2.27 -24.73 16 13 C 0.14 5.52 2.87 46.38 0.13 5.65 16 14 H 0.06 2.94 7.44 -2.39 -0.02 2.92 16 15 C 0.16 8.31 5.58 86.86 0.48 8.80 16 16 N -0.63 -33.53 3.39 -691.98 -2.35 -35.88 16 17 C -0.24 -13.95 10.27 84.03 0.86 -13.09 16 18 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 19 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 20 N -0.95 -59.90 10.09 21.65 0.22 -59.68 16 21 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 25 C 0.13 5.44 6.84 86.73 0.59 6.03 16 26 C -0.09 -2.99 3.20 -9.61 -0.03 -3.02 16 27 H 0.10 2.68 8.00 -2.39 -0.02 2.66 16 28 C -0.13 -3.17 9.16 71.98 0.66 -2.51 16 29 H 0.07 1.64 6.65 -2.38 -0.02 1.63 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.76 5.68 -2.39 -0.01 1.75 16 33 H 0.04 1.08 8.06 -2.39 -0.02 1.06 16 34 H 0.08 1.51 6.49 -2.39 -0.02 1.49 16 35 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.41 9.85 8.57 -92.71 -0.79 9.06 16 43 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 44 H 0.06 3.74 5.87 -2.38 -0.01 3.72 16 45 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 46 H 0.03 1.18 7.76 -2.39 -0.02 1.16 16 47 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 49 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 50 H 0.04 1.21 8.06 -2.39 -0.02 1.19 16 Total: -1.00 -77.62 380.85 -0.06 -77.68 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.11 Total: 23.04 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 5.94 Total: 14.36 kcal Atomic # 7 Polarization: -130.36 SS G_CDS: -8.08 Total: -138.44 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -77.62 -0.06 -77.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080998065.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.288 kcal (2) G-P(sol) polarization free energy of solvation -77.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds