Wall clock time and date at job start Fri Apr 10 2020 18:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 N 1.46900 * 109.47209 * 120.00220 * 2 1 3 5 5 C 1.47845 * 111.00242 * 48.02506 * 4 2 1 6 6 C 1.54899 * 104.79571 * 146.36519 * 5 4 2 7 7 C 1.55397 * 101.74590 * 323.01926 * 6 5 4 8 8 C 1.47439 * 111.00153 * 168.86879 * 4 2 1 9 9 H 1.08996 * 109.89204 * 117.16916 * 8 4 2 10 10 C 1.50707 * 109.88851 * 356.14711 * 8 4 2 11 11 O 1.21280 * 119.99448 * 297.58960 * 10 8 4 12 12 N 1.34776 * 120.00228 * 117.59619 * 10 8 4 13 13 C 1.47425 * 125.64675 * 179.97438 * 12 10 8 14 14 C 1.54910 * 104.82921 * 204.15711 * 13 12 10 15 15 H 1.09004 * 111.00103 * 81.06312 * 14 13 12 16 16 C 1.53001 * 111.00461 * 204.91332 * 14 13 12 17 17 C 1.55161 * 101.58209 * 322.99242 * 14 13 12 18 18 H 1.09006 * 110.71499 * 277.13420 * 17 14 13 19 19 N 1.46502 * 110.71695 * 153.86645 * 17 14 13 20 20 C 1.36943 * 119.99569 * 160.02415 * 19 17 14 21 21 H 1.08002 * 120.00257 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99766 * 179.97438 * 20 19 17 23 23 N 1.31618 * 120.00176 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99734 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47614 * 60.00349 * 24 22 20 26 26 H 1.48506 * 109.47205 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47330 * 299.99930 * 24 22 20 28 28 C 1.47023 * 125.64841 * 0.02562 * 12 10 8 29 29 H 1.08996 * 109.46988 * 300.00072 * 1 2 3 30 30 H 1.09004 * 109.47309 * 59.99849 * 1 2 3 31 31 H 1.09002 * 109.47428 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46947 * 239.99930 * 2 1 3 33 33 H 1.08994 * 109.47232 * 65.84636 * 3 2 1 34 34 H 1.09005 * 109.47362 * 185.85164 * 3 2 1 35 35 H 1.09004 * 109.46977 * 305.84469 * 3 2 1 36 36 H 1.08999 * 110.37046 * 265.19583 * 5 4 2 37 37 H 1.08997 * 110.37132 * 27.53306 * 5 4 2 38 38 H 1.08997 * 110.99136 * 81.02474 * 6 5 4 39 39 H 1.09003 * 110.98960 * 204.79756 * 6 5 4 40 40 H 1.09006 * 110.67553 * 277.17859 * 7 6 5 41 41 H 1.08993 * 110.84570 * 153.86481 * 7 6 5 42 42 H 1.08995 * 110.36457 * 322.99231 * 13 12 10 43 43 H 1.09001 * 110.36953 * 85.20976 * 13 12 10 44 44 H 1.08999 * 109.46827 * 172.19667 * 16 14 13 45 45 H 1.08998 * 109.47199 * 292.19755 * 16 14 13 46 46 H 1.09002 * 109.46689 * 52.19799 * 16 14 13 47 47 H 0.96996 * 120.00582 * 340.02061 * 19 17 14 48 48 H 0.96994 * 120.00376 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.87807 * 59.49568 * 28 12 10 50 50 H 1.08996 * 110.01024 * 298.40406 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.3259 -1.9848 1.3854 6 6 2.3916 -2.9195 2.0100 7 6 3.6817 -2.4663 1.2716 8 6 3.4691 -0.9467 1.1081 9 1 3.9901 -0.4118 1.9021 10 6 3.9845 -0.4985 -0.2353 11 8 3.5732 -1.0233 -1.2484 12 7 4.9026 0.4853 -0.3109 13 6 5.4902 1.0185 -1.5535 14 6 6.8517 1.6187 -1.1225 15 1 7.6109 0.8415 -1.0343 16 6 7.3005 2.7130 -2.0930 17 6 6.5032 2.2158 0.2666 18 1 6.0495 3.2012 0.1599 19 7 7.6948 2.2815 1.1162 20 6 7.7204 3.1238 2.1957 21 1 6.8623 3.7399 2.4204 22 6 8.8493 3.1857 3.0011 23 7 9.8949 2.4345 2.7276 24 14 8.8845 4.3351 4.4731 25 1 7.7935 3.9704 5.4122 26 1 10.1936 4.2149 5.1639 27 1 8.6947 5.7343 4.0132 28 6 5.4848 1.2037 0.8321 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.7647 1.9252 0.9376 34 1 3.1250 1.4443 -0.1048 35 1 1.5937 1.9856 -0.8331 36 1 0.4802 -1.8674 2.0629 37 1 0.9923 -2.3780 0.4252 38 1 2.4786 -2.7502 3.0832 39 1 2.1661 -3.9648 1.7988 40 1 3.7588 -2.9516 0.2986 41 1 4.5659 -2.6690 1.8758 42 1 5.6409 0.2167 -2.2763 43 1 4.8488 1.7926 -1.9747 44 1 8.1844 3.2113 -1.6950 45 1 7.5386 2.2670 -3.0586 46 1 6.4981 3.4403 -2.2166 47 1 8.4657 1.7284 0.9143 48 1 10.6839 2.4780 3.2901 49 1 5.9897 0.5000 1.4939 50 1 4.7029 1.7308 1.3787 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082507517.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:44 Heat of formation + Delta-G solvation = -2.545945 kcal Electronic energy + Delta-G solvation = -27814.922365 eV Core-core repulsion = 24263.788179 eV Total energy + Delta-G solvation = -3551.134186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04944 -38.71864 -37.04660 -34.46694 -34.13464 -32.64789 -30.77804 -29.86542 -29.18910 -27.53752 -26.93221 -26.23682 -24.05412 -22.67656 -21.69762 -21.11454 -20.44888 -19.99882 -18.52234 -17.19008 -17.07336 -16.45989 -16.29563 -15.56853 -15.09452 -14.75589 -14.26161 -13.95286 -13.75527 -13.52794 -13.29990 -13.09960 -12.96680 -12.63664 -12.62064 -12.32340 -12.15848 -12.15356 -12.10622 -11.70684 -11.62321 -11.26613 -11.21790 -11.17274 -11.02288 -10.87036 -10.80020 -10.76073 -10.64466 -10.60594 -10.30328 -10.00305 -9.90474 -9.74091 -9.03102 -8.49050 -8.03753 -7.12161 -5.87150 -3.18218 2.61489 3.16836 3.38969 3.44359 3.44520 3.91570 4.41550 4.50396 4.56528 4.66809 4.94239 5.05482 5.07608 5.09385 5.12188 5.18992 5.34407 5.37212 5.49194 5.53659 5.59890 5.64474 5.70907 5.72477 5.73711 5.75195 5.79305 5.83335 5.86972 5.89156 5.95519 5.96289 5.98008 6.10335 6.15803 6.22718 6.24753 6.34284 6.43053 6.44718 6.53125 6.58450 6.84160 6.87589 7.03646 7.60930 7.73149 8.25663 8.30518 9.42323 9.95518 10.30467 11.34639 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.014755 B = 0.004076 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.224539 B = 6867.920268 C = 7582.239537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.030 3.970 3 C -0.161 4.161 4 N -0.498 5.498 5 C 0.041 3.959 6 C -0.127 4.127 7 C -0.129 4.129 8 C 0.054 3.946 9 H 0.105 0.895 10 C 0.525 3.475 11 O -0.552 6.552 12 N -0.607 5.607 13 C 0.112 3.888 14 C -0.113 4.113 15 H 0.083 0.917 16 C -0.133 4.133 17 C 0.178 3.822 18 H 0.066 0.934 19 N -0.711 5.711 20 C -0.249 4.249 21 H 0.072 0.928 22 C -0.006 4.006 23 N -0.930 5.930 24 Si 0.907 3.093 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.070 3.930 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.387 0.613 48 H 0.257 0.743 49 H 0.074 0.926 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.721 -6.848 -5.949 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 C -0.219 4.219 4 N -0.224 5.224 5 C -0.087 4.087 6 C -0.165 4.165 7 C -0.167 4.167 8 C -0.057 4.057 9 H 0.123 0.877 10 C 0.314 3.686 11 O -0.432 6.432 12 N -0.340 5.340 13 C -0.011 4.011 14 C -0.133 4.133 15 H 0.102 0.898 16 C -0.191 4.191 17 C 0.066 3.934 18 H 0.084 0.916 19 N -0.351 5.351 20 C -0.380 4.380 21 H 0.090 0.910 22 C -0.203 4.203 23 N -0.577 5.577 24 Si 0.738 3.262 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.056 4.056 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.221 0.779 48 H 0.067 0.933 49 H 0.093 0.907 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.071 -6.694 -5.896 17.513 hybrid contribution 0.464 0.019 0.265 0.535 sum -14.607 -6.676 -5.630 17.018 Atomic orbital electron populations 1.21893 0.94722 1.01589 1.01886 1.22565 0.95583 0.95957 0.93665 1.22165 1.03032 0.94981 1.01734 1.64187 1.00845 1.20027 1.37355 1.23090 0.97312 0.88447 0.99805 1.22737 0.94160 0.99129 1.00450 1.22794 0.99105 0.93051 1.01792 1.22635 0.90747 0.97429 0.94882 0.87700 1.20561 0.78253 0.78295 0.91497 1.90550 1.58046 1.56742 1.37822 1.48692 1.40319 1.35417 1.09557 1.22274 0.93814 0.97902 0.87128 1.22621 0.95572 0.98461 0.96641 0.89833 1.21610 1.01993 0.97699 0.97815 1.21235 0.88443 0.95294 0.88439 0.91600 1.42346 1.12867 1.49473 1.30397 1.19192 0.99662 1.16276 1.02870 0.91014 1.24748 0.96251 0.99817 0.99487 1.69644 1.05029 1.42413 1.40592 0.86281 0.76788 0.80563 0.82609 1.21104 1.21667 1.21153 1.23407 0.97459 0.96220 0.88505 0.92244 0.92430 0.92772 0.89166 0.92094 0.90817 0.92685 0.90000 0.93160 0.90378 0.90623 0.90406 0.90019 0.91063 0.91665 0.91293 0.93201 0.92845 0.77860 0.93286 0.90735 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.83 37.15 0.33 -1.25 16 2 C 0.03 0.40 2.10 -67.72 -0.14 0.26 16 3 C -0.16 -2.20 8.96 37.16 0.33 -1.87 16 4 N -0.50 -6.61 5.03 -216.82 -1.09 -7.70 16 5 C 0.04 0.45 5.31 -2.30 -0.01 0.44 16 6 C -0.13 -1.28 7.08 -24.46 -0.17 -1.45 16 7 C -0.13 -1.58 6.45 -24.77 -0.16 -1.74 16 8 C 0.05 0.76 3.43 -67.88 -0.23 0.53 16 9 H 0.11 1.53 6.65 -51.93 -0.35 1.19 16 10 C 0.52 8.31 3.93 -10.98 -0.04 8.26 16 11 O -0.55 -9.88 14.08 5.56 0.08 -9.81 16 12 N -0.61 -9.43 1.95 -170.53 -0.33 -9.77 16 13 C 0.11 1.63 6.37 -2.53 -0.02 1.61 16 14 C -0.11 -1.73 3.25 -88.47 -0.29 -2.02 16 15 H 0.08 1.37 8.00 -51.93 -0.42 0.95 16 16 C -0.13 -1.83 9.31 37.16 0.35 -1.49 16 17 C 0.18 3.21 3.06 -66.10 -0.20 3.01 16 18 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 19 N -0.71 -16.27 5.18 -51.65 -0.27 -16.54 16 20 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 23 N -0.93 -26.68 13.06 55.49 0.72 -25.95 16 24 Si 0.91 21.41 29.55 -169.99 -5.02 16.38 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.07 1.17 5.20 -3.07 -0.02 1.15 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.55 6.42 -51.93 -0.33 0.22 16 32 H 0.09 1.44 4.80 -52.02 -0.25 1.19 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.10 3.65 -51.93 -0.19 0.91 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.57 6.95 -51.93 -0.36 0.21 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.04 7.45 -51.93 -0.39 0.65 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 43 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 47 H 0.39 9.54 7.71 -40.82 -0.31 9.22 16 48 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.07 1.36 7.86 -51.93 -0.41 0.95 16 50 H 0.06 1.05 7.71 -51.93 -0.40 0.65 16 LS Contribution 375.81 15.07 5.66 5.66 Total: -1.00 -28.65 375.81 -9.62 -38.27 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -8.85 Total: 10.83 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.52 Total: -1.39 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.97 Total: -59.96 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.65 -9.62 -38.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082507517.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.726 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds