Wall clock time and date at job start Fri Apr 10 2020 18:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46917 * 2 1 4 4 C 1.53004 * 109.47206 * 119.99463 * 2 1 3 5 5 H 1.09005 * 109.46872 * 305.79329 * 4 2 1 6 6 C 1.50694 * 109.47458 * 185.78874 * 4 2 1 7 7 O 1.21280 * 120.00526 * 274.31214 * 6 4 2 8 8 N 1.34788 * 119.99735 * 94.03744 * 6 4 2 9 9 C 1.47284 * 136.54333 * 0.27521 * 8 6 4 10 10 C 1.54084 * 87.60641 * 151.34881 * 9 8 6 11 11 H 1.08998 * 115.04049 * 141.62911 * 10 9 8 12 12 C 1.53067 * 111.39263 * 273.97797 * 10 9 8 13 13 C 1.51998 * 109.68874 * 142.51574 * 12 10 9 14 14 N 1.46541 * 108.10966 * 301.56011 * 13 12 10 15 15 C 1.36935 * 119.73811 * 236.29893 * 14 13 12 16 16 H 1.08003 * 119.99911 * 30.01926 * 15 14 13 17 17 C 1.38810 * 119.99512 * 210.02066 * 15 14 13 18 18 N 1.31614 * 120.00821 * 8.95405 * 17 15 14 19 19 Si 1.86813 * 119.99438 * 188.95256 * 17 15 14 20 20 H 1.48500 * 109.47241 * 90.00220 * 19 17 15 21 21 H 1.48502 * 109.46998 * 209.99955 * 19 17 15 22 22 H 1.48493 * 109.47110 * 329.99935 * 19 17 15 23 23 C 1.45700 * 120.52238 * 56.31731 * 14 13 12 24 24 C 1.46460 * 136.54086 * 179.90198 * 8 6 4 25 25 H 1.09002 * 111.44155 * 96.40463 * 24 8 6 26 26 N 1.46901 * 109.46724 * 65.78738 * 4 2 1 27 27 C 1.46893 * 111.00376 * 277.97956 * 26 4 2 28 28 C 1.46904 * 110.99951 * 41.93640 * 26 4 2 29 29 H 1.08994 * 109.47436 * 280.04808 * 1 2 3 30 30 H 1.08998 * 109.46889 * 40.05118 * 1 2 3 31 31 H 1.09000 * 109.46742 * 160.04679 * 1 2 3 32 32 H 1.08996 * 109.47759 * 239.99526 * 2 1 3 33 33 H 1.08997 * 109.46818 * 299.99430 * 3 2 1 34 34 H 1.08997 * 109.47375 * 60.00020 * 3 2 1 35 35 H 1.09008 * 109.46818 * 179.97438 * 3 2 1 36 36 H 1.08998 * 113.52777 * 266.03303 * 9 8 6 37 37 H 1.09005 * 113.52801 * 36.66736 * 9 8 6 38 38 H 1.09006 * 109.51063 * 262.32101 * 12 10 9 39 39 H 1.09002 * 109.51723 * 22.47449 * 12 10 9 40 40 H 1.09004 * 109.87788 * 181.85707 * 13 12 10 41 41 H 1.08999 * 109.71364 * 61.16806 * 13 12 10 42 42 H 0.96998 * 120.00633 * 180.02562 * 18 17 15 43 43 H 1.08998 * 108.78960 * 199.09601 * 23 14 13 44 44 H 1.09003 * 108.78677 * 80.88496 * 23 14 13 45 45 H 1.09003 * 109.47295 * 67.18949 * 27 26 4 46 46 H 1.09003 * 109.47147 * 187.19066 * 27 26 4 47 47 H 1.08997 * 109.47341 * 307.18861 * 27 26 4 48 48 H 1.08996 * 109.47023 * 57.59281 * 28 26 4 49 49 H 1.08995 * 109.47179 * 177.59464 * 28 26 4 50 50 H 1.08998 * 109.46786 * 297.59032 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.5944 -0.2706 2.1363 6 6 3.5401 -0.5983 1.3231 7 8 4.2433 -1.3919 0.7344 8 7 4.1004 0.3970 2.0389 9 6 3.6234 1.5200 2.8640 10 6 4.9317 1.3997 3.6691 11 1 5.3712 2.3476 3.9794 12 6 4.8051 0.3634 4.7885 13 6 6.1125 -0.3985 4.9312 14 7 6.4108 -1.0361 3.6460 15 6 6.6022 -2.3908 3.5880 16 1 6.0947 -3.0383 4.2878 17 6 7.4483 -2.9318 2.6298 18 7 8.2006 -2.1411 1.8942 19 14 7.5193 -4.7824 2.3844 20 1 6.5155 -5.1857 1.3671 21 1 8.8763 -5.1685 1.9210 22 1 7.2227 -5.4639 3.6699 23 6 6.5059 -0.2401 2.4294 24 6 5.4585 0.8464 2.3530 25 1 5.7788 1.6447 1.6835 26 7 1.6677 -2.1406 1.1816 27 6 0.2821 -2.3432 1.6254 28 6 1.8702 -2.6739 -0.1721 29 1 -0.3634 0.1793 1.0118 30 1 -0.3633 0.7866 -0.6613 31 1 -0.3633 -0.9660 -0.3507 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 0.0005 36 1 3.5354 2.4571 2.3143 37 1 2.7317 1.2850 3.4451 38 1 4.5802 0.8681 5.7281 39 1 4.0036 -0.3354 4.5488 40 1 6.0153 -1.1597 5.7054 41 1 6.9138 0.2922 5.1936 42 1 8.7916 -2.5191 1.2244 43 1 6.3915 -0.8991 1.5688 44 1 7.4930 0.2203 2.3874 45 1 -0.3994 -1.8802 0.9117 46 1 0.0729 -3.4112 1.6873 47 1 0.1446 -1.8886 2.6064 48 1 2.9109 -2.5356 -0.4652 49 1 1.6276 -3.7365 -0.1841 50 1 1.2224 -2.1455 -0.8715 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084639276.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:05 Heat of formation + Delta-G solvation = 53.466202 kcal Electronic energy + Delta-G solvation = -28897.952358 eV Core-core repulsion = 25349.247041 eV Total energy + Delta-G solvation = -3548.705317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70142 -39.20734 -36.59648 -35.14058 -33.82456 -32.05601 -30.05917 -29.58631 -27.96239 -27.28512 -26.92841 -26.62580 -23.74111 -23.00720 -22.18690 -21.04837 -20.62160 -19.09536 -17.67499 -17.04752 -16.10319 -15.91082 -15.82895 -15.21180 -15.12665 -14.34474 -14.11917 -13.71524 -13.66446 -13.40317 -13.17571 -12.84394 -12.65103 -12.64369 -12.43711 -12.37555 -12.18108 -12.09465 -11.80367 -11.54271 -11.45946 -11.36774 -11.20397 -11.11377 -10.93648 -10.68160 -10.60772 -10.52249 -10.36133 -10.08968 -9.77065 -9.70755 -9.40709 -8.79182 -8.23508 -7.97285 -7.92715 -6.42542 -5.55668 -3.02786 3.23943 3.35590 3.54419 3.60147 3.62675 4.25180 4.63342 4.68553 4.71750 4.76717 4.80573 5.14181 5.23766 5.27607 5.31877 5.37094 5.46140 5.51912 5.53165 5.58663 5.62351 5.65132 5.68297 5.70096 5.75552 5.75951 5.81599 5.89650 5.97686 6.00750 6.13525 6.18009 6.21948 6.25077 6.39628 6.45393 6.48136 6.62116 6.68729 6.88544 7.09719 7.11902 7.22293 7.60489 7.89432 8.03972 8.48717 8.70370 8.96616 9.46928 10.09345 10.58926 11.52112 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.006263 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.247810 B = 4469.412110 C = 5639.219993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.147 4.147 4 C 0.081 3.919 5 H 0.088 0.912 6 C 0.555 3.445 7 O -0.506 6.506 8 N -0.631 5.631 9 C 0.095 3.905 10 C -0.113 4.113 11 H 0.089 0.911 12 C -0.113 4.113 13 C 0.148 3.852 14 N -0.583 5.583 15 C -0.247 4.247 16 H 0.059 0.941 17 C 0.013 3.987 18 N -0.907 5.907 19 Si 0.901 3.099 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.281 1.281 23 C 0.170 3.830 24 C 0.119 3.881 25 H 0.068 0.932 26 N -0.521 5.521 27 C 0.010 3.990 28 C 0.016 3.984 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.017 0.983 42 H 0.251 0.749 43 H 0.100 0.900 44 H 0.028 0.972 45 H 0.041 0.959 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.062 0.938 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.355 9.848 -0.933 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.205 4.205 4 C -0.031 4.031 5 H 0.107 0.893 6 C 0.343 3.657 7 O -0.379 6.379 8 N -0.368 5.368 9 C -0.028 4.028 10 C -0.132 4.132 11 H 0.107 0.893 12 C -0.152 4.152 13 C 0.021 3.979 14 N -0.305 5.305 15 C -0.377 4.377 16 H 0.076 0.924 17 C -0.185 4.185 18 N -0.551 5.551 19 Si 0.732 3.268 20 H -0.213 1.213 21 H -0.220 1.220 22 H -0.207 1.207 23 C 0.043 3.957 24 C 0.015 3.985 25 H 0.086 0.914 26 N -0.244 5.244 27 C -0.137 4.137 28 C -0.132 4.132 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.061 0.939 43 H 0.118 0.882 44 H 0.046 0.954 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.112 0.888 49 H 0.081 0.919 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.632 8.864 -1.212 18.011 hybrid contribution -0.618 -0.399 -0.749 1.050 sum -16.251 8.465 -1.961 18.428 Atomic orbital electron populations 1.22145 0.94790 1.01714 1.01933 1.21741 0.96100 0.97230 0.99244 1.21910 1.01886 0.95138 1.01590 1.21715 0.93771 0.89304 0.98343 0.89348 1.19549 0.88789 0.79545 0.77812 1.90715 1.63302 1.40116 1.43731 1.49455 1.10013 1.27075 1.50281 1.23302 0.98242 0.89666 0.91634 1.22700 0.95919 0.99093 0.95537 0.89254 1.21614 1.01295 0.96926 0.95392 1.20530 0.92651 0.94953 0.89730 1.43405 1.82680 1.04089 1.00365 1.19044 1.20138 0.82061 1.16423 0.92351 1.25030 0.96175 0.97428 0.99877 1.69972 1.26965 1.33223 1.24967 0.86305 0.76618 0.85917 0.77977 1.21317 1.21961 1.20703 1.20167 0.91753 0.91611 0.92133 1.22565 0.85802 0.97392 0.92785 0.91377 1.61776 1.22246 1.14186 1.26158 1.22791 0.88579 1.02098 1.00270 1.22653 1.03733 0.99094 0.87698 0.92404 0.92434 0.92023 0.89723 0.92607 0.92539 0.91940 0.90726 0.91457 0.92943 0.92038 0.92673 0.96478 0.93939 0.88217 0.95435 0.94113 0.91500 0.91828 0.88828 0.91929 0.95642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 7.56 37.16 0.28 -1.13 16 2 C -0.12 -1.51 1.98 -90.62 -0.18 -1.69 16 3 C -0.15 -1.66 8.09 37.16 0.30 -1.36 16 4 C 0.08 1.22 1.84 -68.86 -0.13 1.10 16 5 H 0.09 1.23 7.12 -51.93 -0.37 0.86 16 6 C 0.56 10.95 5.93 -10.98 -0.07 10.88 16 7 O -0.51 -12.60 13.82 5.56 0.08 -12.53 16 8 N -0.63 -11.30 2.61 -187.89 -0.49 -11.79 16 9 C 0.10 1.26 6.67 -11.55 -0.08 1.18 16 10 C -0.11 -1.74 4.58 -90.44 -0.41 -2.15 16 11 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 12 C -0.11 -1.92 5.60 -27.21 -0.15 -2.08 16 13 C 0.15 3.14 6.44 -4.53 -0.03 3.12 16 14 N -0.58 -15.24 3.01 -175.59 -0.53 -15.76 16 15 C -0.25 -7.26 9.48 -15.06 -0.14 -7.40 16 16 H 0.06 1.72 7.84 -52.48 -0.41 1.31 16 17 C 0.01 0.40 5.05 -17.43 -0.09 0.31 16 18 N -0.91 -28.06 10.94 55.49 0.61 -27.46 16 19 Si 0.90 23.92 29.56 -169.99 -5.03 18.89 16 20 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 21 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 22 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 23 C 0.17 4.29 4.56 -5.43 -0.02 4.26 16 24 C 0.12 2.28 4.03 -77.83 -0.31 1.97 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 26 N -0.52 -8.26 4.79 -244.59 -1.17 -9.43 16 27 C 0.01 0.12 8.84 60.06 0.53 0.66 16 28 C 0.02 0.24 8.24 60.07 0.49 0.74 16 29 H 0.06 0.51 7.47 -51.93 -0.39 0.13 16 30 H 0.06 0.48 7.97 -51.93 -0.41 0.07 16 31 H 0.06 0.58 5.17 -51.93 -0.27 0.31 16 32 H 0.08 1.17 6.03 -51.93 -0.31 0.86 16 33 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 34 H 0.06 0.56 7.77 -51.93 -0.40 0.16 16 35 H 0.06 0.85 6.62 -51.92 -0.34 0.50 16 36 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.17 7.68 -51.93 -0.40 0.77 16 40 H 0.05 1.17 7.90 -51.93 -0.41 0.76 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.10 2.98 5.16 -51.93 -0.27 2.71 16 44 H 0.03 0.76 7.94 -51.93 -0.41 0.34 16 45 H 0.04 0.41 4.31 -51.93 -0.22 0.19 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.71 7.89 -51.93 -0.41 0.30 16 48 H 0.09 1.77 6.02 -51.93 -0.31 1.45 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.03 0.33 5.21 -51.93 -0.27 0.06 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -34.66 364.26 -9.59 -44.25 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -8.54 Total: -0.06 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -0.01 Total: 8.39 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -1.58 Total: -64.44 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.03 Total: 18.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.66 -9.59 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084639276.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.717 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds