Wall clock time and date at job start Fri Apr 10 2020 18:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46917 * 2 1 4 4 C 1.53004 * 109.47206 * 119.99463 * 2 1 3 5 5 H 1.09005 * 109.46872 * 305.79329 * 4 2 1 6 6 C 1.50694 * 109.47458 * 185.78874 * 4 2 1 7 7 O 1.21280 * 120.00526 * 274.31214 * 6 4 2 8 8 N 1.34788 * 119.99735 * 94.03744 * 6 4 2 9 9 C 1.47284 * 136.54333 * 0.27521 * 8 6 4 10 10 C 1.54084 * 87.60641 * 151.34881 * 9 8 6 11 11 H 1.08998 * 115.04049 * 141.62911 * 10 9 8 12 12 C 1.53067 * 111.39263 * 273.97797 * 10 9 8 13 13 C 1.51998 * 109.68874 * 142.51574 * 12 10 9 14 14 N 1.46541 * 108.10966 * 301.56011 * 13 12 10 15 15 C 1.36935 * 119.73811 * 236.29893 * 14 13 12 16 16 H 1.08003 * 119.99911 * 30.01926 * 15 14 13 17 17 C 1.38810 * 119.99512 * 210.02066 * 15 14 13 18 18 N 1.31614 * 120.00821 * 8.95405 * 17 15 14 19 19 Si 1.86813 * 119.99438 * 188.95256 * 17 15 14 20 20 H 1.48500 * 109.47241 * 90.00220 * 19 17 15 21 21 H 1.48502 * 109.46998 * 209.99955 * 19 17 15 22 22 H 1.48493 * 109.47110 * 329.99935 * 19 17 15 23 23 C 1.45700 * 120.52238 * 56.31731 * 14 13 12 24 24 C 1.46460 * 136.54086 * 179.90198 * 8 6 4 25 25 H 1.09002 * 111.44155 * 96.40463 * 24 8 6 26 26 N 1.46901 * 109.46724 * 65.78738 * 4 2 1 27 27 C 1.46893 * 111.00376 * 277.97956 * 26 4 2 28 28 C 1.46904 * 110.99951 * 41.93640 * 26 4 2 29 29 H 1.08994 * 109.47436 * 280.04808 * 1 2 3 30 30 H 1.08998 * 109.46889 * 40.05118 * 1 2 3 31 31 H 1.09000 * 109.46742 * 160.04679 * 1 2 3 32 32 H 1.08996 * 109.47759 * 239.99526 * 2 1 3 33 33 H 1.08997 * 109.46818 * 299.99430 * 3 2 1 34 34 H 1.08997 * 109.47375 * 60.00020 * 3 2 1 35 35 H 1.09008 * 109.46818 * 179.97438 * 3 2 1 36 36 H 1.08998 * 113.52777 * 266.03303 * 9 8 6 37 37 H 1.09005 * 113.52801 * 36.66736 * 9 8 6 38 38 H 1.09006 * 109.51063 * 262.32101 * 12 10 9 39 39 H 1.09002 * 109.51723 * 22.47449 * 12 10 9 40 40 H 1.09004 * 109.87788 * 181.85707 * 13 12 10 41 41 H 1.08999 * 109.71364 * 61.16806 * 13 12 10 42 42 H 0.96998 * 120.00633 * 180.02562 * 18 17 15 43 43 H 1.08998 * 108.78960 * 199.09601 * 23 14 13 44 44 H 1.09003 * 108.78677 * 80.88496 * 23 14 13 45 45 H 1.09003 * 109.47295 * 67.18949 * 27 26 4 46 46 H 1.09003 * 109.47147 * 187.19066 * 27 26 4 47 47 H 1.08997 * 109.47341 * 307.18861 * 27 26 4 48 48 H 1.08996 * 109.47023 * 57.59281 * 28 26 4 49 49 H 1.08995 * 109.47179 * 177.59464 * 28 26 4 50 50 H 1.08998 * 109.46786 * 297.59032 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.5944 -0.2706 2.1363 6 6 3.5401 -0.5983 1.3231 7 8 4.2433 -1.3919 0.7344 8 7 4.1004 0.3970 2.0389 9 6 3.6234 1.5200 2.8640 10 6 4.9317 1.3997 3.6691 11 1 5.3712 2.3476 3.9794 12 6 4.8051 0.3634 4.7885 13 6 6.1125 -0.3985 4.9312 14 7 6.4108 -1.0361 3.6460 15 6 6.6022 -2.3908 3.5880 16 1 6.0947 -3.0383 4.2878 17 6 7.4483 -2.9318 2.6298 18 7 8.2006 -2.1411 1.8942 19 14 7.5193 -4.7824 2.3844 20 1 6.5155 -5.1857 1.3671 21 1 8.8763 -5.1685 1.9210 22 1 7.2227 -5.4639 3.6699 23 6 6.5059 -0.2401 2.4294 24 6 5.4585 0.8464 2.3530 25 1 5.7788 1.6447 1.6835 26 7 1.6677 -2.1406 1.1816 27 6 0.2821 -2.3432 1.6254 28 6 1.8702 -2.6739 -0.1721 29 1 -0.3634 0.1793 1.0118 30 1 -0.3633 0.7866 -0.6613 31 1 -0.3633 -0.9660 -0.3507 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 0.0005 36 1 3.5354 2.4571 2.3143 37 1 2.7317 1.2850 3.4451 38 1 4.5802 0.8681 5.7281 39 1 4.0036 -0.3354 4.5488 40 1 6.0153 -1.1597 5.7054 41 1 6.9138 0.2922 5.1936 42 1 8.7916 -2.5191 1.2244 43 1 6.3915 -0.8991 1.5688 44 1 7.4930 0.2203 2.3874 45 1 -0.3994 -1.8802 0.9117 46 1 0.0729 -3.4112 1.6873 47 1 0.1446 -1.8886 2.6064 48 1 2.9109 -2.5356 -0.4652 49 1 1.6276 -3.7365 -0.1841 50 1 1.2224 -2.1455 -0.8715 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084639276.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:05 Heat of formation + Delta-G solvation = 28.377322 kcal Electronic energy + Delta-G solvation = -28899.040293 eV Core-core repulsion = 25349.247041 eV Total energy + Delta-G solvation = -3549.793253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06454 -40.44684 -38.05844 -37.02194 -34.84549 -33.94781 -31.90064 -31.04357 -29.06665 -28.75635 -28.15888 -27.71261 -25.62714 -24.53955 -23.30397 -22.59672 -21.89993 -20.39381 -19.41324 -18.55276 -17.58063 -17.37312 -17.11348 -16.73544 -16.40102 -16.03824 -15.56054 -15.40492 -15.01298 -14.94420 -14.59869 -14.28236 -14.06469 -13.82155 -13.69971 -13.44714 -13.41614 -13.33410 -13.08869 -12.92089 -12.73026 -12.71409 -12.64831 -12.55585 -12.30337 -12.23847 -12.15790 -12.04977 -11.90684 -11.68850 -11.57529 -11.43701 -10.99104 -10.61442 -10.20020 -9.39961 -9.06438 -8.58451 -7.82851 -5.32322 1.33594 1.41841 1.45040 1.87961 2.02887 2.48569 3.13130 3.32596 3.49078 3.53375 3.71080 3.76629 3.86956 4.00588 4.20546 4.24625 4.29906 4.32024 4.36998 4.50581 4.53790 4.56945 4.63087 4.68484 4.71466 4.75665 4.77389 4.79936 4.87306 4.91398 4.92345 4.99618 5.00004 5.09272 5.11838 5.15519 5.17692 5.30608 5.34930 5.37356 5.47128 5.58722 5.74585 5.85632 5.99452 6.17045 6.43689 7.11385 7.22754 7.53156 7.98745 8.38159 9.20409 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.006263 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.247810 B = 4469.412110 C = 5639.219993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C -0.143 4.143 4 C 0.093 3.907 5 H 0.110 0.890 6 C 0.541 3.459 7 O -0.577 6.577 8 N -0.636 5.636 9 C 0.111 3.889 10 C -0.103 4.103 11 H 0.129 0.871 12 C -0.101 4.101 13 C 0.139 3.861 14 N -0.600 5.600 15 C -0.251 4.251 16 H 0.053 0.947 17 C -0.043 4.043 18 N -0.934 5.934 19 Si 0.956 3.044 20 H -0.302 1.302 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.185 3.815 24 C 0.104 3.896 25 H 0.084 0.916 26 N -0.556 5.556 27 C 0.013 3.987 28 C 0.025 3.975 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.025 0.975 42 H 0.243 0.757 43 H 0.044 0.956 44 H -0.010 1.010 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.065 0.935 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.076 12.512 0.805 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 C -0.201 4.201 4 C -0.019 4.019 5 H 0.127 0.873 6 C 0.331 3.669 7 O -0.455 6.455 8 N -0.372 5.372 9 C -0.011 4.011 10 C -0.121 4.121 11 H 0.147 0.853 12 C -0.140 4.140 13 C 0.014 3.986 14 N -0.323 5.323 15 C -0.382 4.382 16 H 0.070 0.930 17 C -0.239 4.239 18 N -0.581 5.581 19 Si 0.785 3.215 20 H -0.230 1.230 21 H -0.214 1.214 22 H -0.188 1.188 23 C 0.058 3.942 24 C 0.000 4.000 25 H 0.102 0.898 26 N -0.280 5.280 27 C -0.134 4.134 28 C -0.123 4.123 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.008 0.992 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.066 0.934 49 H 0.084 0.916 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.397 11.582 0.594 22.599 hybrid contribution 0.593 -1.220 -1.241 1.839 sum -18.803 10.362 -0.648 21.479 Atomic orbital electron populations 1.22081 0.91902 1.02426 1.03371 1.21694 0.98253 0.97274 0.96639 1.21880 0.99958 0.94646 1.03574 1.21675 0.90163 0.89559 1.00509 0.87258 1.20600 0.90728 0.78826 0.76709 1.90696 1.65258 1.42910 1.46667 1.49633 1.09723 1.27915 1.49951 1.23505 0.97865 0.89221 0.90469 1.22739 0.96890 0.99626 0.92893 0.85325 1.21476 0.97443 0.96748 0.98349 1.20776 0.95371 0.95240 0.87193 1.43643 1.82848 1.03345 1.02509 1.19291 1.19062 0.84081 1.15737 0.92961 1.25727 0.96669 1.01147 1.00312 1.70149 1.27913 1.34444 1.25569 0.85437 0.76187 0.81902 0.77978 1.22983 1.21363 1.18798 1.19742 0.92432 0.91897 0.90089 1.22551 0.85272 0.95639 0.96586 0.89793 1.61673 1.25053 1.15033 1.26232 1.22848 0.86659 1.02602 1.01300 1.22454 1.01425 0.99704 0.88684 0.90844 0.90683 0.92057 0.92275 0.91031 0.90113 0.94890 0.86901 0.88740 0.88310 0.94040 0.93317 0.95720 0.94762 0.93705 0.99199 0.91698 0.91508 0.90709 0.93359 0.91644 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.56 71.98 0.54 -1.55 16 2 C -0.12 -2.66 1.98 -10.79 -0.02 -2.68 16 3 C -0.14 -2.79 8.09 71.98 0.58 -2.21 16 4 C 0.09 2.67 1.84 44.17 0.08 2.75 16 5 H 0.11 2.62 7.12 -2.38 -0.02 2.61 16 6 C 0.54 21.74 5.93 87.65 0.52 22.26 16 7 O -0.58 -31.02 13.82 -3.03 -0.04 -31.06 16 8 N -0.64 -22.12 2.61 -866.73 -2.26 -24.38 16 9 C 0.11 2.38 6.67 81.09 0.54 2.92 16 10 C -0.10 -2.75 4.58 -10.68 -0.05 -2.80 16 11 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 12 C -0.10 -3.11 5.60 30.29 0.17 -2.94 16 13 C 0.14 5.82 6.44 86.04 0.55 6.38 16 14 N -0.60 -32.46 3.01 -709.43 -2.14 -34.60 16 15 C -0.25 -15.41 9.48 84.03 0.80 -14.62 16 16 H 0.05 3.20 7.84 -2.91 -0.02 3.18 16 17 C -0.04 -2.74 5.05 84.86 0.43 -2.31 16 18 N -0.93 -61.64 10.94 21.65 0.24 -61.41 16 19 Si 0.96 51.65 29.56 68.60 2.03 53.68 16 20 H -0.30 -16.94 7.11 99.48 0.71 -16.24 16 21 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 22 H -0.26 -13.30 7.11 99.48 0.71 -12.59 16 23 C 0.18 9.86 4.56 85.91 0.39 10.25 16 24 C 0.10 3.97 4.03 38.60 0.16 4.13 16 25 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 26 N -0.56 -17.37 4.79 -927.74 -4.44 -21.81 16 27 C 0.01 0.27 8.84 127.69 1.13 1.40 16 28 C 0.03 0.80 8.24 127.69 1.05 1.85 16 29 H 0.07 0.90 7.47 -2.39 -0.02 0.89 16 30 H 0.07 0.90 7.97 -2.39 -0.02 0.88 16 31 H 0.06 0.93 5.17 -2.39 -0.01 0.91 16 32 H 0.06 1.63 6.03 -2.39 -0.01 1.62 16 33 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 34 H 0.08 1.17 7.77 -2.39 -0.02 1.16 16 35 H 0.03 0.84 6.62 -2.38 -0.02 0.82 16 36 H 0.11 1.69 8.12 -2.39 -0.02 1.67 16 37 H 0.09 1.62 7.82 -2.38 -0.02 1.60 16 38 H 0.10 2.20 8.14 -2.38 -0.02 2.19 16 39 H 0.04 1.45 7.68 -2.39 -0.02 1.43 16 40 H 0.05 2.05 7.90 -2.38 -0.02 2.03 16 41 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.24 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.04 2.88 5.16 -2.39 -0.01 2.87 16 44 H -0.01 -0.57 7.94 -2.39 -0.02 -0.59 16 45 H 0.06 1.07 4.31 -2.39 -0.01 1.06 16 46 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.07 1.42 7.89 -2.39 -0.02 1.40 16 48 H 0.05 1.99 6.02 -2.39 -0.01 1.97 16 49 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.05 1.29 5.21 -2.39 -0.01 1.28 16 Total: -1.00 -86.39 364.26 1.17 -85.22 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.91 Total: 11.53 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 6.87 Total: 22.83 kcal Atomic # 7 Polarization: -133.60 SS G_CDS: -8.60 Total: -142.20 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.04 Total: -31.06 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.03 Total: 53.68 kcal Total: -86.39 1.17 -85.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084639276.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.597 kcal (2) G-P(sol) polarization free energy of solvation -86.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds