Wall clock time and date at job start Fri Apr 10 2020 18:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46952 * 2 1 4 4 H 1.08995 * 109.88099 * 52.53410 * 3 2 1 5 5 C 1.54310 * 110.02442 * 291.41328 * 3 2 1 6 6 H 1.09001 * 110.70988 * 336.61514 * 5 3 2 7 7 C 1.50693 * 110.70740 * 99.85414 * 5 3 2 8 8 O 1.21275 * 120.00429 * 27.33865 * 7 5 3 9 9 N 1.34778 * 120.00176 * 207.33942 * 7 5 3 10 10 C 1.46499 * 120.00276 * 354.80085 * 9 7 5 11 11 C 1.46500 * 120.00196 * 174.79557 * 9 7 5 12 12 C 1.53001 * 109.46948 * 87.79516 * 11 9 7 13 13 H 1.08997 * 112.96632 * 295.13277 * 12 11 9 14 14 C 1.53948 * 113.76645 * 66.81147 * 12 11 9 15 15 C 1.53943 * 86.28957 * 137.90916 * 14 12 11 16 16 N 1.47578 * 86.11701 * 336.38978 * 15 14 12 17 17 C 1.36935 * 134.49248 * 204.63926 * 16 15 14 18 18 H 1.08000 * 120.00104 * 184.40177 * 17 16 15 19 19 C 1.38814 * 120.00125 * 4.40177 * 17 16 15 20 20 N 1.31610 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00057 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46831 * 89.99726 * 21 19 17 23 23 H 1.48498 * 109.46833 * 210.00230 * 21 19 17 24 24 H 1.48503 * 109.46814 * 330.00401 * 21 19 17 25 25 C 1.55139 * 103.02017 * 218.23833 * 5 3 2 26 26 C 1.54909 * 101.65574 * 35.64922 * 25 5 3 27 27 N 1.47446 * 109.88498 * 173.56195 * 3 2 1 28 28 C 1.46897 * 111.00240 * 356.31100 * 27 3 2 29 29 H 1.08998 * 109.47257 * 65.65642 * 1 2 3 30 30 H 1.08998 * 109.46714 * 185.66320 * 1 2 3 31 31 H 1.09001 * 109.46849 * 305.65317 * 1 2 3 32 32 H 1.09005 * 109.46765 * 240.00322 * 2 1 3 33 33 H 1.09004 * 109.47210 * 120.00434 * 2 1 3 34 34 H 1.08997 * 109.47305 * 93.62708 * 10 9 7 35 35 H 1.08997 * 109.47466 * 213.63769 * 10 9 7 36 36 H 1.09004 * 109.46695 * 333.63184 * 10 9 7 37 37 H 1.08998 * 109.47523 * 207.79526 * 11 9 7 38 38 H 1.08998 * 109.47555 * 327.79706 * 11 9 7 39 39 H 1.09000 * 113.73858 * 252.24973 * 14 12 11 40 40 H 1.08991 * 113.74594 * 23.56166 * 14 12 11 41 41 H 1.09003 * 113.77188 * 90.69153 * 15 14 12 42 42 H 1.09004 * 113.76953 * 222.08954 * 15 14 12 43 43 H 0.97009 * 120.00067 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.98947 * 277.56126 * 25 5 3 45 45 H 1.09003 * 111.02691 * 153.75928 * 25 5 3 46 46 H 1.08999 * 110.37600 * 204.10100 * 26 25 5 47 47 H 1.09007 * 110.36573 * 81.75968 * 26 25 5 48 48 H 1.08998 * 109.47195 * 60.00187 * 28 27 3 49 49 H 1.08999 * 109.47170 * 180.02562 * 28 27 3 50 50 H 1.08997 * 109.47234 * 300.00023 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5757 1.9998 0.8136 5 6 1.7171 2.1171 -1.3497 6 1 1.5882 1.3701 -2.1330 7 6 0.4906 2.9847 -1.2319 8 8 0.1959 3.4763 -0.1631 9 7 -0.2791 3.2142 -2.3142 10 6 0.1366 2.7160 -3.6277 11 6 -1.5315 3.9618 -2.1773 12 6 -1.2496 5.4591 -2.3179 13 1 -0.6237 5.8511 -1.5163 14 6 -0.7862 5.8736 -3.7262 15 6 -1.7172 7.0891 -3.5659 16 7 -2.4543 6.2686 -2.5853 17 6 -3.7396 6.2614 -2.1131 18 1 -4.0205 5.5820 -1.3219 19 6 -4.6816 7.1273 -2.6513 20 7 -4.3393 7.9556 -3.6151 21 14 -6.4353 7.1170 -2.0076 22 1 -6.5558 8.0807 -0.8843 23 1 -7.3649 7.5082 -3.0976 24 1 -6.7789 5.7538 -1.5293 25 6 2.9768 2.9818 -1.6186 26 6 4.1009 2.0845 -1.0434 27 7 3.5062 1.4561 0.1555 28 6 4.0275 0.0968 0.3509 29 1 -0.3634 0.4236 -0.9363 30 1 -0.3633 -1.0227 0.1014 31 1 -0.3633 0.5990 0.8351 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 -0.3180 1.7418 -3.8073 35 1 -0.1847 3.4150 -4.3998 36 1 1.2222 2.6206 -3.6531 37 1 -2.2285 3.6488 -2.9546 38 1 -1.9672 3.7646 -1.1978 39 1 0.2706 6.1347 -3.7813 40 1 -1.0963 5.1838 -4.5110 41 1 -1.2298 7.9615 -3.1308 42 1 -2.2915 7.3239 -4.4622 43 1 -4.9975 8.5610 -3.9910 44 1 2.9214 3.9296 -1.0830 45 1 3.1171 3.1470 -2.6868 46 1 4.9646 2.6889 -0.7662 47 1 4.3867 1.3227 -1.7688 48 1 3.7734 -0.5175 -0.5130 49 1 5.1110 0.1358 0.4632 50 1 3.5850 -0.3367 1.2477 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085602522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:29 Heat of formation + Delta-G solvation = 33.400267 kcal Electronic energy + Delta-G solvation = -27345.418511 eV Core-core repulsion = 23795.843070 eV Total energy + Delta-G solvation = -3549.575441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71892 -38.84949 -37.60729 -35.14602 -33.54240 -32.62386 -32.05950 -28.92430 -27.98472 -27.79929 -26.50010 -25.76303 -23.84250 -23.29489 -22.40655 -21.58261 -19.86232 -19.12429 -18.81160 -17.33256 -16.62413 -16.36911 -15.64888 -15.47574 -15.25939 -14.94267 -14.61167 -14.25575 -14.03565 -13.56371 -13.46168 -13.32665 -13.14990 -12.83051 -12.71250 -12.39405 -12.30973 -12.03424 -11.82915 -11.78121 -11.58094 -11.45844 -11.37943 -11.35875 -11.01232 -10.93161 -10.82862 -10.66006 -10.63971 -10.43919 -9.79829 -9.72713 -9.61577 -9.42778 -8.73031 -8.47303 -8.30759 -6.81568 -5.70928 -3.04083 2.76139 3.15146 3.42377 3.47636 3.48912 3.72960 4.33915 4.39673 4.47761 4.52777 4.79990 4.91822 4.95003 5.01932 5.11407 5.14939 5.17798 5.23602 5.25783 5.27523 5.39200 5.46025 5.51401 5.55747 5.58886 5.61864 5.68249 5.73936 5.78404 5.85304 5.87180 5.94766 6.02263 6.07899 6.22022 6.23730 6.32178 6.46712 6.65811 6.73828 6.75640 6.82822 6.87819 7.30241 7.49570 7.62483 7.64723 8.04986 8.39201 9.10367 9.76650 10.66616 11.45248 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.023972 B = 0.003283 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.746826 B = 8526.980366 C = 9134.036130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C 0.083 3.917 4 H 0.108 0.892 5 C -0.126 4.126 6 H 0.094 0.906 7 C 0.523 3.477 8 O -0.531 6.531 9 N -0.607 5.607 10 C 0.076 3.924 11 C 0.120 3.880 12 C 0.132 3.868 13 H 0.047 0.953 14 C -0.158 4.158 15 C 0.156 3.844 16 N -0.602 5.602 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.116 4.116 26 C 0.043 3.957 27 N -0.528 5.528 28 C 0.016 3.984 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.022 0.978 42 H 0.077 0.923 43 H 0.252 0.748 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.047 0.953 48 H 0.030 0.970 49 H 0.064 0.936 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.332 -17.281 0.248 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C -0.025 4.025 4 H 0.126 0.874 5 C -0.149 4.149 6 H 0.112 0.888 7 C 0.309 3.691 8 O -0.407 6.407 9 N -0.340 5.340 10 C -0.068 4.068 11 C -0.003 4.003 12 C 0.024 3.976 13 H 0.065 0.935 14 C -0.196 4.196 15 C 0.031 3.969 16 N -0.328 5.328 17 C -0.348 4.348 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.154 4.154 26 C -0.084 4.084 27 N -0.251 5.251 28 C -0.133 4.133 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.040 0.960 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.066 0.934 48 H 0.049 0.951 49 H 0.083 0.917 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.955 -16.626 1.269 23.780 hybrid contribution -1.189 -0.338 -0.454 1.317 sum 15.766 -16.964 0.815 23.174 Atomic orbital electron populations 1.21745 0.95015 1.01569 1.02558 1.22165 0.96904 0.96549 1.02127 1.22554 0.87679 0.95497 0.96757 0.87421 1.22614 0.94437 0.98128 0.99726 0.88825 1.20173 0.83922 0.81112 0.83863 1.90707 1.71417 1.50836 1.27724 1.47830 1.23401 1.55090 1.07676 1.21869 1.00115 0.99599 0.85207 1.21759 0.83546 0.92200 1.02839 1.22511 0.89520 0.90558 0.95030 0.93542 1.23772 0.97805 1.00834 0.97205 1.22264 0.89441 0.91003 0.94236 1.46029 1.04399 1.34439 1.47980 1.19028 0.83282 1.17602 1.14869 0.90450 1.24758 0.98025 0.98800 0.98832 1.69819 1.33320 1.25271 1.28467 0.86155 0.84426 0.77663 0.77757 1.21673 1.21696 1.20616 1.22680 0.92065 0.99111 1.01588 1.23075 0.97758 0.96988 0.90614 1.63781 1.04621 1.18990 1.37688 1.22607 1.00273 0.89489 1.00890 0.92885 0.92699 0.92004 0.92118 0.90763 0.92966 0.90286 0.91453 0.90015 0.90737 0.93502 0.91004 0.96031 0.90448 0.93770 0.89679 0.90101 0.89830 0.93449 0.95105 0.91725 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.42 37.16 0.35 -1.22 16 2 C -0.14 -1.30 4.08 -26.73 -0.11 -1.41 16 3 C 0.08 0.94 3.00 -66.73 -0.20 0.74 16 4 H 0.11 1.57 6.81 -51.93 -0.35 1.22 16 5 C -0.13 -1.40 1.33 -89.96 -0.12 -1.52 16 6 H 0.09 0.87 6.48 -51.93 -0.34 0.53 16 7 C 0.52 7.83 5.86 -10.99 -0.06 7.77 16 8 O -0.53 -10.24 15.34 5.56 0.09 -10.15 16 9 N -0.61 -8.79 2.81 -181.58 -0.51 -9.30 16 10 C 0.08 0.78 9.68 59.85 0.58 1.36 16 11 C 0.12 2.21 5.27 -4.04 -0.02 2.19 16 12 C 0.13 2.80 4.57 -66.86 -0.31 2.49 16 13 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.16 -2.99 7.00 -25.81 -0.18 -3.17 16 15 C 0.16 3.75 7.63 -2.98 -0.02 3.73 16 16 N -0.60 -15.67 3.57 -170.76 -0.61 -16.28 16 17 C -0.22 -6.26 10.51 -15.06 -0.16 -6.42 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -27.61 11.30 55.49 0.63 -26.98 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.12 -1.15 6.32 -24.59 -0.16 -1.30 16 26 C 0.04 0.38 6.73 -2.30 -0.02 0.36 16 27 N -0.53 -5.44 5.44 -231.57 -1.26 -6.70 16 28 C 0.02 0.12 8.26 60.06 0.50 0.62 16 29 H 0.05 0.59 7.17 -51.93 -0.37 0.22 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.50 6.98 -51.93 -0.36 0.14 16 33 H 0.07 0.64 6.17 -51.93 -0.32 0.31 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.85 6.19 -51.93 -0.32 0.53 16 36 H 0.07 0.55 5.81 -51.93 -0.30 0.25 16 37 H 0.08 1.51 8.05 -51.93 -0.42 1.09 16 38 H 0.07 1.53 7.57 -51.93 -0.39 1.13 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.27 6.87 -51.93 -0.36 0.91 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 2.03 6.96 -51.93 -0.36 1.67 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 45 H 0.08 0.64 7.54 -51.93 -0.39 0.25 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.35 7.78 -51.93 -0.40 -0.06 16 48 H 0.03 0.22 6.66 -51.93 -0.35 -0.13 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.54 6.58 -51.93 -0.34 0.20 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -33.06 377.45 -9.75 -42.81 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.73 Total: -0.50 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.02 Total: 3.90 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -1.75 Total: -59.26 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.06 -9.75 -42.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085602522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.209 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds