Wall clock time and date at job start Fri Apr 10 2020 18:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46952 * 2 1 4 4 H 1.08995 * 109.88099 * 52.53410 * 3 2 1 5 5 C 1.54310 * 110.02442 * 291.41328 * 3 2 1 6 6 H 1.09001 * 110.70988 * 336.61514 * 5 3 2 7 7 C 1.50693 * 110.70740 * 99.85414 * 5 3 2 8 8 O 1.21275 * 120.00429 * 27.33865 * 7 5 3 9 9 N 1.34778 * 120.00176 * 207.33942 * 7 5 3 10 10 C 1.46499 * 120.00276 * 354.80085 * 9 7 5 11 11 C 1.46500 * 120.00196 * 174.79557 * 9 7 5 12 12 C 1.53001 * 109.46948 * 87.79516 * 11 9 7 13 13 H 1.08997 * 112.96632 * 295.13277 * 12 11 9 14 14 C 1.53948 * 113.76645 * 66.81147 * 12 11 9 15 15 C 1.53943 * 86.28957 * 137.90916 * 14 12 11 16 16 N 1.47578 * 86.11701 * 336.38978 * 15 14 12 17 17 C 1.36935 * 134.49248 * 204.63926 * 16 15 14 18 18 H 1.08000 * 120.00104 * 184.40177 * 17 16 15 19 19 C 1.38814 * 120.00125 * 4.40177 * 17 16 15 20 20 N 1.31610 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00057 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46831 * 89.99726 * 21 19 17 23 23 H 1.48498 * 109.46833 * 210.00230 * 21 19 17 24 24 H 1.48503 * 109.46814 * 330.00401 * 21 19 17 25 25 C 1.55139 * 103.02017 * 218.23833 * 5 3 2 26 26 C 1.54909 * 101.65574 * 35.64922 * 25 5 3 27 27 N 1.47446 * 109.88498 * 173.56195 * 3 2 1 28 28 C 1.46897 * 111.00240 * 356.31100 * 27 3 2 29 29 H 1.08998 * 109.47257 * 65.65642 * 1 2 3 30 30 H 1.08998 * 109.46714 * 185.66320 * 1 2 3 31 31 H 1.09001 * 109.46849 * 305.65317 * 1 2 3 32 32 H 1.09005 * 109.46765 * 240.00322 * 2 1 3 33 33 H 1.09004 * 109.47210 * 120.00434 * 2 1 3 34 34 H 1.08997 * 109.47305 * 93.62708 * 10 9 7 35 35 H 1.08997 * 109.47466 * 213.63769 * 10 9 7 36 36 H 1.09004 * 109.46695 * 333.63184 * 10 9 7 37 37 H 1.08998 * 109.47523 * 207.79526 * 11 9 7 38 38 H 1.08998 * 109.47555 * 327.79706 * 11 9 7 39 39 H 1.09000 * 113.73858 * 252.24973 * 14 12 11 40 40 H 1.08991 * 113.74594 * 23.56166 * 14 12 11 41 41 H 1.09003 * 113.77188 * 90.69153 * 15 14 12 42 42 H 1.09004 * 113.76953 * 222.08954 * 15 14 12 43 43 H 0.97009 * 120.00067 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.98947 * 277.56126 * 25 5 3 45 45 H 1.09003 * 111.02691 * 153.75928 * 25 5 3 46 46 H 1.08999 * 110.37600 * 204.10100 * 26 25 5 47 47 H 1.09007 * 110.36573 * 81.75968 * 26 25 5 48 48 H 1.08998 * 109.47195 * 60.00187 * 28 27 3 49 49 H 1.08999 * 109.47170 * 180.02562 * 28 27 3 50 50 H 1.08997 * 109.47234 * 300.00023 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5757 1.9998 0.8136 5 6 1.7171 2.1171 -1.3497 6 1 1.5882 1.3701 -2.1330 7 6 0.4906 2.9847 -1.2319 8 8 0.1959 3.4763 -0.1631 9 7 -0.2791 3.2142 -2.3142 10 6 0.1366 2.7160 -3.6277 11 6 -1.5315 3.9618 -2.1773 12 6 -1.2496 5.4591 -2.3179 13 1 -0.6237 5.8511 -1.5163 14 6 -0.7862 5.8736 -3.7262 15 6 -1.7172 7.0891 -3.5659 16 7 -2.4543 6.2686 -2.5853 17 6 -3.7396 6.2614 -2.1131 18 1 -4.0205 5.5820 -1.3219 19 6 -4.6816 7.1273 -2.6513 20 7 -4.3393 7.9556 -3.6151 21 14 -6.4353 7.1170 -2.0076 22 1 -6.5558 8.0807 -0.8843 23 1 -7.3649 7.5082 -3.0976 24 1 -6.7789 5.7538 -1.5293 25 6 2.9768 2.9818 -1.6186 26 6 4.1009 2.0845 -1.0434 27 7 3.5062 1.4561 0.1555 28 6 4.0275 0.0968 0.3509 29 1 -0.3634 0.4236 -0.9363 30 1 -0.3633 -1.0227 0.1014 31 1 -0.3633 0.5990 0.8351 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 -0.3180 1.7418 -3.8073 35 1 -0.1847 3.4150 -4.3998 36 1 1.2222 2.6206 -3.6531 37 1 -2.2285 3.6488 -2.9546 38 1 -1.9672 3.7646 -1.1978 39 1 0.2706 6.1347 -3.7813 40 1 -1.0963 5.1838 -4.5110 41 1 -1.2298 7.9615 -3.1308 42 1 -2.2915 7.3239 -4.4622 43 1 -4.9975 8.5610 -3.9910 44 1 2.9214 3.9296 -1.0830 45 1 3.1171 3.1470 -2.6868 46 1 4.9646 2.6889 -0.7662 47 1 4.3867 1.3227 -1.7688 48 1 3.7734 -0.5175 -0.5130 49 1 5.1110 0.1358 0.4632 50 1 3.5850 -0.3367 1.2477 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085602522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:28 Heat of formation + Delta-G solvation = 10.873771 kcal Electronic energy + Delta-G solvation = -27346.395333 eV Core-core repulsion = 23795.843070 eV Total energy + Delta-G solvation = -3550.552263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73425 -40.12330 -39.11572 -36.44350 -34.31621 -34.25212 -33.38604 -30.20619 -29.86882 -28.85134 -27.45800 -26.63044 -25.33691 -24.84230 -23.74357 -22.44941 -21.06764 -20.60149 -19.94378 -18.77402 -18.22007 -17.47356 -16.97985 -16.67360 -16.37969 -16.09014 -15.95393 -15.64550 -15.26633 -14.92983 -14.64672 -14.24996 -14.14004 -14.03473 -13.82939 -13.63001 -13.53187 -13.33772 -13.15273 -12.90530 -12.73570 -12.54146 -12.49241 -12.38036 -12.29978 -12.28756 -12.18808 -12.13378 -11.80550 -11.73709 -11.57013 -11.40490 -11.34930 -10.84864 -10.73197 -9.62695 -9.17549 -8.90632 -7.90214 -5.24924 1.42730 1.45011 1.53463 1.61292 1.96795 2.47614 3.00202 3.28635 3.40312 3.51378 3.57259 3.71072 3.84302 3.96062 4.17230 4.19773 4.20954 4.27669 4.29922 4.35882 4.38857 4.49776 4.51451 4.58048 4.64764 4.67857 4.76145 4.79897 4.83382 4.87608 4.92013 4.95810 5.00523 5.04419 5.05707 5.06884 5.12607 5.16963 5.23304 5.25199 5.37513 5.49474 5.56476 5.73674 5.95895 6.02358 6.17800 6.47868 6.92478 7.22385 7.60405 8.56717 9.25419 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.023972 B = 0.003283 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.746826 B = 8526.980366 C = 9134.036130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.084 3.916 4 H 0.062 0.938 5 C -0.116 4.116 6 H 0.125 0.875 7 C 0.519 3.481 8 O -0.585 6.585 9 N -0.604 5.604 10 C 0.066 3.934 11 C 0.137 3.863 12 C 0.131 3.869 13 H 0.022 0.978 14 C -0.119 4.119 15 C 0.146 3.854 16 N -0.629 5.629 17 C -0.233 4.233 18 H 0.074 0.926 19 C -0.063 4.063 20 N -0.950 5.950 21 Si 0.975 3.025 22 H -0.291 1.291 23 H -0.289 1.289 24 H -0.268 1.268 25 C -0.115 4.115 26 C 0.047 3.953 27 N -0.550 5.550 28 C 0.015 3.985 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.007 0.993 42 H 0.053 0.947 43 H 0.249 0.751 44 H 0.054 0.946 45 H 0.110 0.890 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.046 0.954 49 H 0.074 0.926 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.194 -20.069 -1.469 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.024 4.024 4 H 0.080 0.920 5 C -0.138 4.138 6 H 0.143 0.857 7 C 0.308 3.692 8 O -0.465 6.465 9 N -0.336 5.336 10 C -0.075 4.075 11 C 0.013 3.987 12 C 0.024 3.976 13 H 0.040 0.960 14 C -0.157 4.157 15 C 0.021 3.979 16 N -0.356 5.356 17 C -0.361 4.361 18 H 0.092 0.908 19 C -0.256 4.256 20 N -0.599 5.599 21 Si 0.803 3.197 22 H -0.218 1.218 23 H -0.215 1.215 24 H -0.193 1.193 25 C -0.153 4.153 26 C -0.080 4.080 27 N -0.274 5.274 28 C -0.132 4.132 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.025 0.975 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.128 0.872 46 H 0.105 0.895 47 H 0.092 0.908 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.863 -19.456 -0.470 27.103 hybrid contribution -1.705 0.556 0.156 1.800 sum 17.158 -18.900 -0.314 25.529 Atomic orbital electron populations 1.21721 0.96160 1.01931 1.00849 1.22120 0.95686 0.95415 1.03648 1.22349 0.88526 0.96178 0.95375 0.92003 1.22628 0.92560 0.98072 1.00573 0.85715 1.20946 0.84625 0.80698 0.82955 1.90690 1.72879 1.52978 1.29945 1.47877 1.21852 1.54292 1.09598 1.22207 1.02304 1.00481 0.82500 1.21257 0.85544 0.90781 1.01160 1.22564 0.87423 0.91755 0.95835 0.96016 1.23505 0.98556 0.97795 0.95836 1.22266 0.90352 0.92484 0.92827 1.46445 1.04844 1.35896 1.48380 1.19328 0.84885 1.17301 1.14624 0.90831 1.25563 1.01895 0.98752 0.99396 1.69996 1.34285 1.25978 1.29662 0.85139 0.79680 0.77970 0.76926 1.21834 1.21479 1.19323 1.22718 0.91778 0.97764 1.03066 1.23112 0.97098 0.97301 0.90486 1.63682 1.03842 1.20834 1.39016 1.22659 1.00782 0.88307 1.01488 0.93722 0.90940 0.94883 0.89667 0.90006 0.90772 0.90168 0.88387 0.89693 0.93871 0.90194 0.88823 0.97501 0.92891 0.94217 0.92710 0.87195 0.89536 0.90802 0.93525 0.90683 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.42 71.98 0.68 -2.29 16 2 C -0.13 -2.15 4.08 30.60 0.12 -2.03 16 3 C 0.08 1.84 3.00 45.26 0.14 1.97 16 4 H 0.06 1.93 6.81 -2.39 -0.02 1.91 16 5 C -0.12 -2.31 1.33 -10.36 -0.01 -2.33 16 6 H 0.12 1.73 6.48 -2.39 -0.02 1.71 16 7 C 0.52 15.42 5.86 87.65 0.51 15.93 16 8 O -0.59 -23.88 15.34 -3.02 -0.05 -23.93 16 9 N -0.60 -16.70 2.81 -846.78 -2.38 -19.08 16 10 C 0.07 1.11 9.68 127.77 1.24 2.35 16 11 C 0.14 5.10 5.27 86.38 0.46 5.56 16 12 C 0.13 5.66 4.57 45.09 0.21 5.86 16 13 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 14 C -0.12 -4.34 7.00 31.25 0.22 -4.12 16 15 C 0.15 7.16 7.63 86.48 0.66 7.82 16 16 N -0.63 -33.59 3.57 -694.17 -2.48 -36.07 16 17 C -0.23 -13.61 10.51 84.03 0.88 -12.73 16 18 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 19 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 20 N -0.95 -58.34 11.30 21.65 0.24 -58.10 16 21 Si 0.97 47.18 29.55 68.60 2.03 49.21 16 22 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 C -0.11 -1.97 6.32 31.98 0.20 -1.77 16 26 C 0.05 0.68 6.73 86.77 0.58 1.26 16 27 N -0.55 -10.28 5.44 -886.55 -4.83 -15.11 16 28 C 0.02 0.19 8.26 127.69 1.05 1.25 16 29 H 0.04 0.95 7.17 -2.39 -0.02 0.93 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.03 6.98 -2.38 -0.02 1.01 16 33 H 0.08 1.24 6.17 -2.39 -0.01 1.22 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.38 6.19 -2.39 -0.01 1.36 16 36 H 0.10 1.07 5.81 -2.38 -0.01 1.06 16 37 H 0.08 3.10 8.05 -2.39 -0.02 3.08 16 38 H 0.04 1.86 7.57 -2.39 -0.02 1.84 16 39 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.09 3.04 6.87 -2.39 -0.02 3.03 16 41 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 42 H 0.05 2.85 6.96 -2.38 -0.02 2.83 16 43 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 44 H 0.05 1.28 8.04 -2.39 -0.02 1.27 16 45 H 0.11 1.23 7.54 -2.39 -0.02 1.21 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 0.70 7.78 -2.38 -0.02 0.69 16 48 H 0.05 0.45 6.66 -2.39 -0.02 0.44 16 49 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.07 0.90 6.58 -2.39 -0.02 0.89 16 Total: -1.00 -77.10 377.45 0.86 -76.24 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.91 Total: 13.31 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 7.41 Total: 13.52 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -9.44 Total: -128.35 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -77.10 0.86 -76.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085602522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.117 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds