Wall clock time and date at job start Fri Apr 10 2020 18:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.46910 * 2 1 4 4 C 1.46840 * 111.00080 * 295.93143 * 3 2 1 5 5 C 1.53039 * 109.52249 * 174.16045 * 4 3 2 6 6 C 1.53118 * 109.27666 * 59.18162 * 5 4 3 7 7 C 1.53119 * 109.16250 * 302.34203 * 6 5 4 8 8 C 1.46848 * 110.99809 * 171.72299 * 3 2 1 9 9 H 1.08992 * 109.45426 * 65.82911 * 8 3 2 10 10 C 1.50702 * 109.46161 * 305.85277 * 8 3 2 11 11 O 1.21281 * 120.00088 * 329.13191 * 10 8 3 12 12 N 1.34775 * 119.99851 * 149.12241 * 10 8 3 13 13 C 1.46500 * 120.00073 * 4.83854 * 12 10 8 14 14 C 1.46500 * 120.00045 * 184.83506 * 12 10 8 15 15 C 1.53008 * 109.47142 * 82.83813 * 14 12 10 16 16 H 1.08996 * 112.77600 * 303.16506 * 15 14 12 17 17 C 1.53236 * 113.38443 * 172.45866 * 15 14 12 18 18 C 1.53500 * 83.42715 * 219.29069 * 17 15 14 19 19 N 1.47063 * 87.98616 * 25.90170 * 18 17 15 20 20 C 1.36934 * 136.05952 * 152.84795 * 19 18 17 21 21 H 1.08000 * 119.99766 * 217.11717 * 20 19 18 22 22 C 1.38812 * 120.00171 * 37.10792 * 20 19 18 23 23 N 1.31624 * 119.99839 * 7.24185 * 22 20 19 24 24 Si 1.86798 * 120.00202 * 187.24273 * 22 20 19 25 25 H 1.48503 * 109.47137 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47275 * 299.99824 * 24 22 20 27 27 H 1.48497 * 109.46976 * 59.99916 * 24 22 20 28 28 H 1.09000 * 109.47396 * 59.99938 * 1 2 3 29 29 H 1.09007 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47406 * 299.99738 * 1 2 3 31 31 H 1.09006 * 109.47028 * 240.00415 * 2 1 3 32 32 H 1.09000 * 109.47396 * 120.00061 * 2 1 3 33 33 H 1.09001 * 109.46369 * 54.14278 * 4 3 2 34 34 H 1.08997 * 109.45639 * 294.16946 * 4 3 2 35 35 H 1.08994 * 109.50328 * 299.23873 * 5 4 3 36 36 H 1.09002 * 109.53358 * 179.14101 * 5 4 3 37 37 H 1.09005 * 109.51876 * 182.43852 * 6 5 4 38 38 H 1.08996 * 109.52466 * 62.24991 * 6 5 4 39 39 H 1.08998 * 109.50598 * 297.71985 * 7 6 5 40 40 H 1.08996 * 109.53965 * 177.61885 * 7 6 5 41 41 H 1.09000 * 109.47453 * 269.71221 * 13 12 10 42 42 H 1.09001 * 109.47034 * 29.71420 * 13 12 10 43 43 H 1.09004 * 109.47036 * 149.71137 * 13 12 10 44 44 H 1.08997 * 109.47266 * 322.84006 * 14 12 10 45 45 H 1.09001 * 109.47246 * 202.83456 * 14 12 10 46 46 H 1.09003 * 114.32546 * 105.65918 * 17 15 14 47 47 H 1.08995 * 114.19633 * 332.91657 * 17 15 14 48 48 H 1.09001 * 113.46903 * 271.11319 * 18 17 15 49 49 H 1.08999 * 113.46265 * 140.68360 * 18 17 15 50 50 H 0.97003 * 119.99714 * 355.64093 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6298 2.0810 -1.2328 5 6 2.0281 3.5554 -1.1356 6 6 3.5415 3.6575 -0.9264 7 6 3.9275 2.8839 0.3374 8 6 3.4741 1.4290 0.1974 9 1 3.9706 0.9747 -0.6600 10 6 3.8344 0.6683 1.4475 11 8 3.0555 0.6241 2.3761 12 7 5.0221 0.0371 1.5334 13 6 6.0058 0.1774 0.4570 14 6 5.3294 -0.7893 2.7034 15 6 4.7165 -2.1793 2.5212 16 1 3.6399 -2.1471 2.3538 17 6 5.1358 -3.1760 3.6070 18 6 5.1917 -4.1623 2.4322 19 7 5.4361 -3.0136 1.5470 20 6 6.0629 -2.8094 0.3468 21 1 6.6183 -1.8991 0.1756 22 6 5.9846 -3.7725 -0.6498 23 7 5.1943 -4.8141 -0.4978 24 14 7.0009 -3.5905 -2.2065 25 1 6.7397 -4.7431 -3.1058 26 1 6.6281 -2.3295 -2.8964 27 1 8.4431 -3.5546 -1.8547 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 0.5509 2.0044 -1.3676 34 1 2.1353 1.6236 -2.0833 35 1 1.5124 4.0169 -0.2935 36 1 1.7526 4.0689 -2.0567 37 1 3.8238 4.7042 -0.8133 38 1 4.0577 3.2309 -1.7865 39 1 3.4417 3.3348 1.2027 40 1 5.0090 2.9170 0.4690 41 1 5.8519 -0.6100 -0.2808 42 1 5.8864 1.1504 -0.0198 43 1 7.0110 0.0964 0.8706 44 1 4.9137 -0.3232 3.5968 45 1 6.4103 -0.8800 2.8103 46 1 4.3584 -3.3961 4.3388 47 1 6.1047 -2.9633 4.0586 48 1 4.2430 -4.6638 2.2408 49 1 6.0316 -4.8548 2.4865 50 1 4.7151 -4.9417 0.3359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085987095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:49 Heat of formation + Delta-G solvation = 29.931563 kcal Electronic energy + Delta-G solvation = -28315.204558 eV Core-core repulsion = 24765.478702 eV Total energy + Delta-G solvation = -3549.725856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.32803 -38.60562 -37.52945 -34.98412 -34.15742 -32.57520 -31.38152 -29.63582 -28.46633 -27.56848 -26.14851 -24.65524 -23.93381 -23.24400 -22.14601 -21.25569 -19.93717 -19.28690 -18.70458 -17.38604 -16.71324 -16.29655 -15.27386 -15.21793 -14.87118 -14.60090 -14.47695 -14.15170 -13.85287 -13.62011 -13.49773 -13.36327 -13.14419 -13.11079 -12.58092 -12.34593 -12.17958 -11.87532 -11.69357 -11.58184 -11.37918 -11.30699 -11.07996 -10.90302 -10.87248 -10.84779 -10.63346 -10.62691 -10.46094 -10.29477 -10.14723 -9.66418 -9.18862 -9.13265 -8.56355 -8.16779 -7.99692 -6.76931 -6.11996 -3.39413 2.98813 3.36398 3.38936 3.40377 3.57906 4.00197 4.45483 4.65848 4.73879 4.86754 5.06060 5.11936 5.14606 5.26253 5.34700 5.35951 5.43048 5.47757 5.50798 5.57363 5.62703 5.66487 5.69491 5.78917 5.80882 5.83456 5.87045 5.98073 6.00031 6.04174 6.09224 6.13044 6.16954 6.27761 6.29874 6.35934 6.38541 6.44624 6.54637 6.64334 6.75554 6.97503 7.12731 7.20615 7.24520 7.65948 7.89466 8.31615 8.65319 8.84340 9.72169 10.63004 11.22168 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.005259 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.025464 B = 5322.880024 C = 5874.722697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.514 5.514 4 C 0.052 3.948 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.105 4.105 8 C 0.070 3.930 9 H 0.061 0.939 10 C 0.519 3.481 11 O -0.533 6.533 12 N -0.596 5.596 13 C 0.068 3.932 14 C 0.124 3.876 15 C 0.121 3.879 16 H 0.042 0.958 17 C -0.156 4.156 18 C 0.123 3.877 19 N -0.601 5.601 20 C -0.319 4.319 21 H 0.074 0.926 22 C -0.024 4.024 23 N -0.922 5.922 24 Si 1.069 2.931 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.290 1.290 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.033 0.967 49 H 0.040 0.960 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 14.536 0.060 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 N -0.240 5.240 4 C -0.076 4.076 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.143 4.143 8 C -0.041 4.041 9 H 0.079 0.921 10 C 0.306 3.694 11 O -0.410 6.410 12 N -0.328 5.328 13 C -0.075 4.075 14 C 0.000 4.000 15 C 0.014 3.986 16 H 0.059 0.941 17 C -0.195 4.195 18 C -0.003 4.003 19 N -0.329 5.329 20 C -0.447 4.447 21 H 0.091 0.909 22 C -0.227 4.227 23 N -0.562 5.562 24 Si 0.898 3.102 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.217 1.217 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.096 0.904 48 H 0.051 0.949 49 H 0.059 0.941 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.827 14.098 -0.791 14.401 hybrid contribution 0.052 0.008 0.632 0.634 sum -2.775 14.106 -0.159 14.377 Atomic orbital electron populations 1.21738 0.94856 1.01450 1.01854 1.22175 0.96126 0.88165 1.01776 1.61732 1.10225 1.16115 1.35933 1.22174 1.00981 0.94239 0.90193 1.21592 0.96028 0.95862 1.01933 1.21574 0.96373 1.00135 0.97560 1.21522 1.00626 0.92818 0.99355 1.21612 0.89769 0.96692 0.96066 0.92132 1.20235 0.81284 0.79161 0.88737 1.90644 1.49228 1.61938 1.39189 1.47630 1.16004 1.47535 1.21591 1.22291 0.92040 1.01565 0.91623 1.21793 1.00139 0.90957 0.87073 1.22523 0.95241 0.90847 0.90015 0.94097 1.23471 1.00499 0.99338 0.96199 1.22268 0.97992 0.92288 0.87727 1.45640 1.60999 1.04797 1.21444 1.19868 1.27420 1.07701 0.89678 0.90894 1.26289 0.98857 0.96292 1.01264 1.70713 1.26758 1.30592 1.28153 0.83454 0.75213 0.75880 0.75623 1.20886 1.21790 1.21701 0.93102 0.92392 0.91850 0.95061 0.89572 0.90149 0.94951 0.91012 0.91601 0.91501 0.92014 0.90456 0.91212 0.89190 0.92726 0.91373 0.91202 0.90655 0.92342 0.90434 0.94882 0.94122 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.80 37.16 0.36 -1.61 16 2 C 0.04 0.76 5.32 -3.82 -0.02 0.74 16 3 N -0.51 -7.91 4.27 -228.08 -0.97 -8.88 16 4 C 0.05 0.64 5.28 -3.84 -0.02 0.62 16 5 C -0.12 -1.19 6.09 -26.65 -0.16 -1.35 16 6 C -0.12 -1.21 6.00 -26.61 -0.16 -1.37 16 7 C -0.11 -1.32 5.19 -26.65 -0.14 -1.45 16 8 C 0.07 1.09 1.40 -68.87 -0.10 1.00 16 9 H 0.06 0.97 6.81 -51.93 -0.35 0.62 16 10 C 0.52 9.61 5.52 -10.99 -0.06 9.55 16 11 O -0.53 -11.35 15.07 5.56 0.08 -11.27 16 12 N -0.60 -10.85 2.89 -181.56 -0.53 -11.37 16 13 C 0.07 1.10 8.01 59.85 0.48 1.58 16 14 C 0.12 2.32 5.26 -4.04 -0.02 2.30 16 15 C 0.12 2.58 4.25 -72.54 -0.31 2.27 16 16 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.16 -2.94 8.01 -26.35 -0.21 -3.15 16 18 C 0.12 2.80 6.88 -8.52 -0.06 2.75 16 19 N -0.60 -14.81 3.32 -177.18 -0.59 -15.40 16 20 C -0.32 -8.34 9.17 -15.06 -0.14 -8.48 16 21 H 0.07 1.78 4.39 -52.49 -0.23 1.55 16 22 C -0.02 -0.67 5.48 -17.43 -0.10 -0.76 16 23 N -0.92 -27.89 13.65 55.49 0.76 -27.13 16 24 Si 1.07 24.29 29.93 -169.99 -5.09 19.21 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.05 0.61 6.38 -51.93 -0.33 0.28 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.74 5.84 -51.93 -0.30 1.44 16 33 H 0.08 0.91 6.14 -51.93 -0.32 0.59 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 0.80 7.04 -51.93 -0.37 0.44 16 41 H 0.09 1.74 5.48 -51.93 -0.28 1.46 16 42 H 0.05 0.73 5.51 -51.93 -0.29 0.44 16 43 H 0.07 1.04 7.77 -51.93 -0.40 0.63 16 44 H 0.07 1.27 7.58 -51.93 -0.39 0.88 16 45 H 0.08 1.36 7.82 -51.93 -0.41 0.95 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 48 H 0.03 0.80 7.48 -51.93 -0.39 0.41 16 49 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.27 8.22 5.71 -40.82 -0.23 7.99 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -31.91 371.87 -9.97 -41.87 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.59 Total: 4.75 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.65 Total: 2.62 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -1.33 Total: -62.79 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.09 Total: 19.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.91 -9.97 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085987095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.803 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds