Wall clock time and date at job start Fri Apr 10 2020 18:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.46910 * 2 1 4 4 C 1.46840 * 111.00080 * 295.93143 * 3 2 1 5 5 C 1.53039 * 109.52249 * 174.16045 * 4 3 2 6 6 C 1.53118 * 109.27666 * 59.18162 * 5 4 3 7 7 C 1.53119 * 109.16250 * 302.34203 * 6 5 4 8 8 C 1.46848 * 110.99809 * 171.72299 * 3 2 1 9 9 H 1.08992 * 109.45426 * 65.82911 * 8 3 2 10 10 C 1.50702 * 109.46161 * 305.85277 * 8 3 2 11 11 O 1.21281 * 120.00088 * 329.13191 * 10 8 3 12 12 N 1.34775 * 119.99851 * 149.12241 * 10 8 3 13 13 C 1.46500 * 120.00073 * 4.83854 * 12 10 8 14 14 C 1.46500 * 120.00045 * 184.83506 * 12 10 8 15 15 C 1.53008 * 109.47142 * 82.83813 * 14 12 10 16 16 H 1.08996 * 112.77600 * 303.16506 * 15 14 12 17 17 C 1.53236 * 113.38443 * 172.45866 * 15 14 12 18 18 C 1.53500 * 83.42715 * 219.29069 * 17 15 14 19 19 N 1.47063 * 87.98616 * 25.90170 * 18 17 15 20 20 C 1.36934 * 136.05952 * 152.84795 * 19 18 17 21 21 H 1.08000 * 119.99766 * 217.11717 * 20 19 18 22 22 C 1.38812 * 120.00171 * 37.10792 * 20 19 18 23 23 N 1.31624 * 119.99839 * 7.24185 * 22 20 19 24 24 Si 1.86798 * 120.00202 * 187.24273 * 22 20 19 25 25 H 1.48503 * 109.47137 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47275 * 299.99824 * 24 22 20 27 27 H 1.48497 * 109.46976 * 59.99916 * 24 22 20 28 28 H 1.09000 * 109.47396 * 59.99938 * 1 2 3 29 29 H 1.09007 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47406 * 299.99738 * 1 2 3 31 31 H 1.09006 * 109.47028 * 240.00415 * 2 1 3 32 32 H 1.09000 * 109.47396 * 120.00061 * 2 1 3 33 33 H 1.09001 * 109.46369 * 54.14278 * 4 3 2 34 34 H 1.08997 * 109.45639 * 294.16946 * 4 3 2 35 35 H 1.08994 * 109.50328 * 299.23873 * 5 4 3 36 36 H 1.09002 * 109.53358 * 179.14101 * 5 4 3 37 37 H 1.09005 * 109.51876 * 182.43852 * 6 5 4 38 38 H 1.08996 * 109.52466 * 62.24991 * 6 5 4 39 39 H 1.08998 * 109.50598 * 297.71985 * 7 6 5 40 40 H 1.08996 * 109.53965 * 177.61885 * 7 6 5 41 41 H 1.09000 * 109.47453 * 269.71221 * 13 12 10 42 42 H 1.09001 * 109.47034 * 29.71420 * 13 12 10 43 43 H 1.09004 * 109.47036 * 149.71137 * 13 12 10 44 44 H 1.08997 * 109.47266 * 322.84006 * 14 12 10 45 45 H 1.09001 * 109.47246 * 202.83456 * 14 12 10 46 46 H 1.09003 * 114.32546 * 105.65918 * 17 15 14 47 47 H 1.08995 * 114.19633 * 332.91657 * 17 15 14 48 48 H 1.09001 * 113.46903 * 271.11319 * 18 17 15 49 49 H 1.08999 * 113.46265 * 140.68360 * 18 17 15 50 50 H 0.97003 * 119.99714 * 355.64093 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6298 2.0810 -1.2328 5 6 2.0281 3.5554 -1.1356 6 6 3.5415 3.6575 -0.9264 7 6 3.9275 2.8839 0.3374 8 6 3.4741 1.4290 0.1974 9 1 3.9706 0.9747 -0.6600 10 6 3.8344 0.6683 1.4475 11 8 3.0555 0.6241 2.3761 12 7 5.0221 0.0371 1.5334 13 6 6.0058 0.1774 0.4570 14 6 5.3294 -0.7893 2.7034 15 6 4.7165 -2.1793 2.5212 16 1 3.6399 -2.1471 2.3538 17 6 5.1358 -3.1760 3.6070 18 6 5.1917 -4.1623 2.4322 19 7 5.4361 -3.0136 1.5470 20 6 6.0629 -2.8094 0.3468 21 1 6.6183 -1.8991 0.1756 22 6 5.9846 -3.7725 -0.6498 23 7 5.1943 -4.8141 -0.4978 24 14 7.0009 -3.5905 -2.2065 25 1 6.7397 -4.7431 -3.1058 26 1 6.6281 -2.3295 -2.8964 27 1 8.4431 -3.5546 -1.8547 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 0.5509 2.0044 -1.3676 34 1 2.1353 1.6236 -2.0833 35 1 1.5124 4.0169 -0.2935 36 1 1.7526 4.0689 -2.0567 37 1 3.8238 4.7042 -0.8133 38 1 4.0577 3.2309 -1.7865 39 1 3.4417 3.3348 1.2027 40 1 5.0090 2.9170 0.4690 41 1 5.8519 -0.6100 -0.2808 42 1 5.8864 1.1504 -0.0198 43 1 7.0110 0.0964 0.8706 44 1 4.9137 -0.3232 3.5968 45 1 6.4103 -0.8800 2.8103 46 1 4.3584 -3.3961 4.3388 47 1 6.1047 -2.9633 4.0586 48 1 4.2430 -4.6638 2.2408 49 1 6.0316 -4.8548 2.4865 50 1 4.7151 -4.9417 0.3359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085987095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:48 Heat of formation + Delta-G solvation = 9.330557 kcal Electronic energy + Delta-G solvation = -28316.097884 eV Core-core repulsion = 24765.478702 eV Total energy + Delta-G solvation = -3550.619182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68224 -40.20196 -38.94582 -36.45478 -35.27691 -34.59691 -32.52064 -30.74977 -30.08251 -29.42025 -27.57671 -25.85728 -25.29007 -25.02346 -23.62472 -22.45344 -21.18766 -20.91015 -20.11805 -19.23733 -18.12377 -17.63509 -16.85147 -16.53624 -16.41303 -16.04913 -15.71448 -15.55847 -15.53585 -15.17312 -14.89410 -14.57730 -14.40372 -14.26168 -14.00045 -13.78634 -13.59130 -13.28883 -13.05809 -12.81583 -12.76150 -12.68482 -12.59949 -12.35645 -12.34379 -12.26583 -12.08203 -11.95470 -11.79228 -11.61858 -11.43412 -11.25495 -11.11817 -10.60596 -10.54179 -9.53711 -9.37991 -8.83979 -8.23857 -5.51994 1.53205 1.55112 1.62934 1.78109 2.03030 2.60520 2.80136 3.25782 3.35605 3.43607 3.75258 3.78175 3.87346 3.96274 4.08806 4.11327 4.13140 4.22527 4.28173 4.30429 4.34378 4.45441 4.46459 4.51862 4.57537 4.64398 4.65889 4.72548 4.76198 4.83416 4.87097 4.88332 4.91497 4.95190 5.00500 5.02869 5.07080 5.13618 5.17372 5.25435 5.42067 5.44889 5.57888 5.73325 5.88934 6.07273 6.26145 6.46087 6.68833 7.20075 7.65689 8.59358 9.09468 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.005259 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.025464 B = 5322.880024 C = 5874.722697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.050 3.950 3 N -0.521 5.521 4 C 0.048 3.952 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.100 4.100 8 C 0.072 3.928 9 H 0.055 0.945 10 C 0.513 3.487 11 O -0.568 6.568 12 N -0.602 5.602 13 C 0.070 3.930 14 C 0.130 3.870 15 C 0.121 3.879 16 H 0.005 0.995 17 C -0.124 4.124 18 C 0.116 3.884 19 N -0.623 5.623 20 C -0.311 4.311 21 H 0.095 0.905 22 C -0.087 4.087 23 N -0.967 5.967 24 Si 1.114 2.886 25 H -0.301 1.301 26 H -0.265 1.265 27 H -0.268 1.268 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.014 0.986 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.011 0.989 49 H 0.030 0.970 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.539 17.738 -0.541 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.079 4.079 3 N -0.247 5.247 4 C -0.079 4.079 5 C -0.150 4.150 6 C -0.152 4.152 7 C -0.138 4.138 8 C -0.039 4.039 9 H 0.073 0.927 10 C 0.301 3.699 11 O -0.447 6.447 12 N -0.333 5.333 13 C -0.072 4.072 14 C 0.006 3.994 15 C 0.014 3.986 16 H 0.023 0.977 17 C -0.163 4.163 18 C -0.010 4.010 19 N -0.351 5.351 20 C -0.439 4.439 21 H 0.112 0.888 22 C -0.282 4.282 23 N -0.611 5.611 24 Si 0.938 3.062 25 H -0.228 1.228 26 H -0.191 1.191 27 H -0.194 1.194 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.121 0.879 48 H 0.029 0.971 49 H 0.048 0.952 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.691 17.348 -1.377 17.484 hybrid contribution -0.355 -0.976 0.888 1.367 sum -2.046 16.372 -0.489 16.506 Atomic orbital electron populations 1.21671 0.92614 1.01856 1.02858 1.22031 0.98021 0.88997 0.98802 1.61802 1.10158 1.14881 1.37892 1.22348 1.01644 0.95410 0.88525 1.21605 0.96136 0.94063 1.03164 1.21592 0.96263 1.01119 0.96232 1.21549 1.01273 0.90574 1.00397 1.21678 0.90016 0.98298 0.93950 0.92694 1.20858 0.80796 0.78857 0.89343 1.90613 1.50130 1.63236 1.40683 1.47782 1.16524 1.47127 1.21849 1.22288 0.92229 1.02231 0.90495 1.21668 1.00598 0.89286 0.87808 1.22519 0.93155 0.92982 0.89962 0.97736 1.23324 1.02441 0.95603 0.94928 1.22271 0.96433 0.92506 0.89791 1.46048 1.61304 1.06084 1.21642 1.20416 1.26033 1.07586 0.89844 0.88832 1.27705 0.99661 0.96169 1.04651 1.70848 1.29586 1.32875 1.27775 0.82889 0.74983 0.76155 0.72212 1.22774 1.19056 1.19381 0.90667 0.92372 0.92099 0.96790 0.93793 0.89144 0.95152 0.91361 0.88939 0.89073 0.91383 0.91582 0.89856 0.92405 0.89411 0.89847 0.90493 0.89215 0.89866 0.87919 0.97128 0.95197 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.80 71.98 0.71 -2.99 16 2 C 0.05 1.73 5.32 86.30 0.46 2.19 16 3 N -0.52 -15.82 4.27 -875.51 -3.74 -19.56 16 4 C 0.05 1.08 5.28 86.33 0.46 1.54 16 5 C -0.11 -1.92 6.09 30.65 0.19 -1.74 16 6 C -0.11 -1.91 6.00 30.67 0.18 -1.72 16 7 C -0.10 -2.26 5.19 30.65 0.16 -2.10 16 8 C 0.07 2.19 1.40 44.19 0.06 2.25 16 9 H 0.06 1.72 6.81 -2.39 -0.02 1.70 16 10 C 0.51 19.05 5.52 87.66 0.48 19.53 16 11 O -0.57 -24.73 15.07 -3.03 -0.05 -24.77 16 12 N -0.60 -21.51 2.89 -846.73 -2.45 -23.96 16 13 C 0.07 2.15 8.01 127.77 1.02 3.17 16 14 C 0.13 4.75 5.26 86.38 0.45 5.21 16 15 C 0.12 5.21 4.25 41.70 0.18 5.39 16 16 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 17 C -0.12 -4.57 8.01 30.84 0.25 -4.33 16 18 C 0.12 5.45 6.88 83.17 0.57 6.02 16 19 N -0.62 -31.29 3.32 -714.46 -2.37 -33.66 16 20 C -0.31 -16.38 9.17 84.03 0.77 -15.61 16 21 H 0.09 4.48 4.39 -2.91 -0.01 4.47 16 22 C -0.09 -4.91 5.48 84.86 0.47 -4.45 16 23 N -0.97 -60.98 13.65 21.65 0.30 -60.69 16 24 Si 1.11 49.05 29.93 68.60 2.05 51.10 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 27 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 28 H 0.07 1.71 6.38 -2.39 -0.02 1.70 16 29 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.04 1.89 5.84 -2.39 -0.01 1.88 16 33 H 0.09 1.85 6.14 -2.39 -0.01 1.84 16 34 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 1.64 7.04 -2.39 -0.02 1.63 16 41 H 0.06 2.18 5.48 -2.39 -0.01 2.17 16 42 H 0.09 2.09 5.51 -2.39 -0.01 2.08 16 43 H 0.08 2.31 7.77 -2.38 -0.02 2.29 16 44 H 0.08 2.72 7.58 -2.39 -0.02 2.70 16 45 H 0.09 3.03 7.82 -2.39 -0.02 3.01 16 46 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.10 3.31 8.11 -2.39 -0.02 3.29 16 48 H 0.01 0.56 7.48 -2.39 -0.02 0.54 16 49 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.25 16.29 5.71 -92.71 -0.53 15.76 16 Total: -1.00 -73.60 371.87 1.30 -72.30 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 1.15 Total: 26.89 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.41 Total: 12.35 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -8.27 Total: -137.87 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.77 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.05 Total: 51.10 kcal Total: -73.60 1.30 -72.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085987095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.632 kcal (2) G-P(sol) polarization free energy of solvation -73.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds