Wall clock time and date at job start Fri Apr 10 2020 18:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47130 * 2 1 4 4 N 1.46899 * 109.47075 * 120.00108 * 2 1 3 5 5 C 1.47845 * 111.00178 * 47.82615 * 4 2 1 6 6 C 1.54904 * 104.79583 * 146.36191 * 5 4 2 7 7 C 1.55399 * 101.74392 * 323.01987 * 6 5 4 8 8 C 1.47443 * 110.99974 * 168.66842 * 4 2 1 9 9 H 1.08999 * 109.89078 * 117.16996 * 8 4 2 10 10 C 1.50708 * 109.88644 * 356.15041 * 8 4 2 11 11 O 1.21285 * 119.99837 * 296.92541 * 10 8 4 12 12 N 1.34770 * 119.99975 * 116.92958 * 10 8 4 13 13 C 1.46503 * 119.99862 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47042 * 179.97438 * 13 12 10 15 15 H 1.08999 * 112.90924 * 43.74619 * 14 13 12 16 16 C 1.53785 * 113.61560 * 174.99949 * 14 13 12 17 17 C 1.53781 * 87.08310 * 139.98139 * 16 14 13 18 18 H 1.08995 * 113.61619 * 89.11825 * 17 16 14 19 19 N 1.46504 * 113.61189 * 220.02184 * 17 16 14 20 20 C 1.36938 * 119.99632 * 204.99950 * 19 17 16 21 21 H 1.07998 * 120.00259 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99708 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00165 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99701 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46901 * 60.00168 * 24 22 20 26 26 H 1.48496 * 109.46922 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47309 * 300.00117 * 24 22 20 28 28 C 1.53779 * 113.61671 * 272.49599 * 14 13 12 29 29 H 1.09007 * 109.46625 * 300.00144 * 1 2 3 30 30 H 1.08995 * 109.47375 * 59.99913 * 1 2 3 31 31 H 1.09000 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46871 * 240.00259 * 2 1 3 33 33 H 1.09002 * 109.47361 * 185.67667 * 3 2 1 34 34 H 1.08997 * 109.47373 * 305.67256 * 3 2 1 35 35 H 1.08996 * 109.47404 * 65.67592 * 3 2 1 36 36 H 1.08997 * 110.37509 * 265.19056 * 5 4 2 37 37 H 1.09002 * 110.37396 * 27.42292 * 5 4 2 38 38 H 1.08996 * 110.99088 * 81.02216 * 6 5 4 39 39 H 1.08999 * 110.98934 * 204.84062 * 6 5 4 40 40 H 1.08995 * 110.67806 * 277.17518 * 7 6 5 41 41 H 1.09002 * 110.84795 * 153.86137 * 7 6 5 42 42 H 0.96998 * 120.00595 * 359.97438 * 12 10 8 43 43 H 1.08998 * 109.46926 * 59.99918 * 13 12 10 44 44 H 1.09000 * 109.46996 * 299.99484 * 13 12 10 45 45 H 1.08997 * 113.61465 * 254.53162 * 16 14 13 46 46 H 1.09001 * 113.61302 * 25.34673 * 16 14 13 47 47 H 0.96995 * 120.00043 * 25.00098 * 19 17 16 48 48 H 0.97000 * 119.99604 * 180.02562 * 23 22 20 49 49 H 1.09000 * 113.61141 * 334.56669 * 28 14 13 50 50 H 1.08998 * 113.61396 * 105.46954 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.3226 -1.9826 1.3881 6 6 2.3867 -2.9196 2.0120 7 6 3.6768 -2.4710 1.2709 8 6 3.4683 -0.9509 1.1060 9 1 3.9921 -0.4166 1.8986 10 6 3.9827 -0.5057 -0.2388 11 8 3.5771 -1.0387 -1.2499 12 7 4.8935 0.4845 -0.3177 13 6 5.3940 0.9169 -1.6250 14 6 6.4088 2.0459 -1.4346 15 1 7.1094 1.8540 -0.6219 16 6 7.0875 2.4910 -2.7408 17 6 6.9631 3.9332 -2.2218 18 1 7.8152 4.2574 -1.6244 19 7 6.5926 4.9000 -3.2584 20 6 6.9282 6.2198 -3.1150 21 1 7.4656 6.5482 -2.2376 22 6 6.5767 7.1359 -4.0969 23 7 5.9205 6.7361 -5.1655 24 14 7.0339 8.9365 -3.9010 25 1 8.5101 9.0645 -3.8027 26 1 6.5484 9.7013 -5.0776 27 1 6.4071 9.4750 -2.6670 28 6 5.7717 3.4445 -1.3812 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1253 1.4442 -0.1017 34 1 1.5961 1.9848 -0.8348 35 1 1.7621 1.9261 0.9364 36 1 0.4784 -1.8621 2.0669 37 1 0.9845 -2.3751 0.4290 38 1 2.4760 -2.7493 3.0849 39 1 2.1582 -3.9645 1.8017 40 1 3.7510 -2.9576 0.2984 41 1 4.5615 -2.6754 1.8739 42 1 5.2177 0.9110 0.4909 43 1 4.5625 1.2748 -2.2321 44 1 5.8746 0.0766 -2.1261 45 1 8.1179 2.1486 -2.8362 46 1 6.4916 2.2932 -3.6318 47 1 6.1097 4.6051 -4.0462 48 1 5.6753 7.3762 -5.8517 49 1 4.8155 3.5087 -1.9005 50 1 5.7399 3.8718 -0.3791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086085156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:08 Heat of formation + Delta-G solvation = 8.715352 kcal Electronic energy + Delta-G solvation = -26583.893920 eV Core-core repulsion = 23033.248061 eV Total energy + Delta-G solvation = -3550.645859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.20575 -38.87508 -37.77872 -34.79700 -34.62832 -33.32618 -30.67897 -29.93714 -29.38052 -27.27873 -26.96154 -25.10296 -24.00705 -22.85963 -21.66751 -21.06396 -21.01160 -19.79542 -18.96209 -17.24934 -17.03269 -16.93192 -16.20385 -15.65236 -15.46868 -14.80992 -14.75985 -14.25249 -13.92791 -13.91119 -13.56420 -13.47279 -13.08748 -12.83841 -12.59118 -12.30703 -12.19343 -12.05627 -11.89940 -11.82271 -11.47739 -11.43494 -11.37793 -11.28122 -11.10623 -10.96763 -10.93466 -10.82165 -10.53786 -10.32942 -10.18645 -9.97299 -9.82908 -9.49672 -9.02453 -8.87438 -8.36512 -6.97342 -5.78934 -3.07872 2.37757 3.07085 3.42659 3.47127 3.48249 3.70912 4.20210 4.34603 4.55816 4.57658 4.79437 4.92387 4.93810 4.97733 5.00533 5.03972 5.14763 5.21332 5.38663 5.41631 5.45565 5.48601 5.49539 5.54471 5.62822 5.64068 5.76235 5.79477 5.81264 5.83385 5.86836 5.90814 5.92162 6.07869 6.08980 6.20749 6.28758 6.32571 6.34531 6.42452 6.58253 6.66992 6.81191 6.84192 7.09873 7.37774 7.67752 8.06964 8.39634 9.50594 10.08790 10.42945 11.43393 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.023903 B = 0.002637 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.122047 B =10615.540108 C =11240.878180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.030 3.970 3 C -0.160 4.160 4 N -0.498 5.498 5 C 0.040 3.960 6 C -0.127 4.127 7 C -0.129 4.129 8 C 0.053 3.947 9 H 0.099 0.901 10 C 0.506 3.494 11 O -0.538 6.538 12 N -0.720 5.720 13 C 0.130 3.870 14 C -0.127 4.127 15 H 0.088 0.912 16 C -0.142 4.142 17 C 0.166 3.834 18 H 0.075 0.925 19 N -0.712 5.712 20 C -0.245 4.245 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.160 4.160 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.402 0.598 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.078 0.922 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 -19.711 15.749 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.218 4.218 4 N -0.224 5.224 5 C -0.088 4.088 6 C -0.165 4.165 7 C -0.168 4.168 8 C -0.058 4.058 9 H 0.117 0.883 10 C 0.293 3.707 11 O -0.416 6.416 12 N -0.371 5.371 13 C 0.007 3.993 14 C -0.146 4.146 15 H 0.106 0.894 16 C -0.182 4.182 17 C 0.054 3.946 18 H 0.093 0.907 19 N -0.350 5.350 20 C -0.376 4.376 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.201 4.201 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.236 0.764 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.096 0.904 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.610 -19.527 15.419 25.744 hybrid contribution 0.306 0.734 -0.474 0.926 sum -6.304 -18.793 14.945 24.825 Atomic orbital electron populations 1.21903 0.94499 1.01656 1.02180 1.22583 0.95898 0.95988 0.93283 1.22158 1.02810 0.94768 1.02108 1.64191 1.00526 1.20148 1.37564 1.23105 0.97303 0.88319 1.00046 1.22741 0.94155 0.99339 1.00278 1.22805 0.99015 0.93010 1.01940 1.22618 0.91334 0.97437 0.94442 0.88295 1.20904 0.78788 0.79365 0.91654 1.90611 1.57159 1.56103 1.37742 1.46281 1.43289 1.37123 1.10454 1.21457 0.97010 0.96756 0.84060 1.22639 0.97713 0.94393 0.99890 0.89377 1.23450 0.99740 0.98903 0.96133 1.21513 0.94659 0.87551 0.90882 0.90690 1.42402 1.66789 1.04303 1.21535 1.19254 1.30261 0.84488 1.03603 0.91162 1.24769 1.01022 0.98224 0.96871 1.69649 1.44312 1.33894 1.10183 0.86269 0.78004 0.85052 0.76860 1.21234 1.21676 1.21231 1.23945 1.01326 0.93848 1.01008 0.92205 0.92116 0.92752 0.89230 0.91089 0.92190 0.92125 0.89890 0.92957 0.90449 0.90531 0.90201 0.90183 0.76359 0.91208 0.91809 0.92039 0.90162 0.78074 0.93387 0.90376 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.83 37.16 0.33 -1.14 16 2 C 0.03 0.35 2.11 -67.71 -0.14 0.21 16 3 C -0.16 -1.95 8.97 37.16 0.33 -1.62 16 4 N -0.50 -5.12 5.03 -216.81 -1.09 -6.21 16 5 C 0.04 0.34 5.31 -2.30 -0.01 0.33 16 6 C -0.13 -0.89 7.08 -24.45 -0.17 -1.07 16 7 C -0.13 -1.06 6.45 -24.77 -0.16 -1.22 16 8 C 0.05 0.51 3.62 -67.87 -0.25 0.26 16 9 H 0.10 0.80 7.94 -51.93 -0.41 0.38 16 10 C 0.51 6.06 3.93 -10.98 -0.04 6.02 16 11 O -0.54 -8.34 13.84 5.55 0.08 -8.26 16 12 N -0.72 -7.75 3.82 -60.29 -0.23 -7.98 16 13 C 0.13 1.65 5.51 -4.04 -0.02 1.63 16 14 C -0.13 -1.64 3.75 -89.81 -0.34 -1.98 16 15 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.14 -2.23 7.39 -25.92 -0.19 -2.42 16 17 C 0.17 3.17 4.48 -67.12 -0.30 2.87 16 18 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 19 N -0.71 -17.68 5.40 -52.64 -0.28 -17.96 16 20 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 24 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C -0.16 -2.59 7.43 -25.92 -0.19 -2.78 16 29 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.50 6.41 -51.93 -0.33 0.17 16 32 H 0.09 1.29 4.82 -51.97 -0.25 1.04 16 33 H 0.07 0.88 4.38 -51.93 -0.23 0.65 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.50 6.93 -51.93 -0.36 0.14 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.80 7.43 -51.93 -0.39 0.41 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.40 3.45 8.33 -40.82 -0.34 3.11 16 43 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 47 H 0.39 10.21 7.92 -40.82 -0.32 9.88 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.08 1.41 7.89 -51.93 -0.41 1.00 16 50 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -31.36 382.28 -10.38 -41.74 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -8.91 Total: 11.36 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.41 Total: -8.27 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.88 Total: -59.59 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.08 Total: -8.26 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.36 -10.38 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086085156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.454 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds