Wall clock time and date at job start Fri Apr 10 2020 18:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46902 * 109.47272 * 2 1 4 4 C 1.46844 * 110.99963 * 71.67164 * 3 2 1 5 5 C 1.53046 * 109.52290 * 185.84163 * 4 3 2 6 6 C 1.53121 * 109.27724 * 300.82434 * 5 4 3 7 7 C 1.53120 * 109.16077 * 57.65585 * 6 5 4 8 8 C 1.46845 * 111.00226 * 195.88959 * 3 2 1 9 9 H 1.09003 * 109.44817 * 294.16633 * 8 3 2 10 10 C 1.50698 * 109.46497 * 54.13843 * 8 3 2 11 11 O 1.21279 * 119.99993 * 28.89578 * 10 8 3 12 12 N 1.34783 * 119.99783 * 208.88694 * 10 8 3 13 13 C 1.46504 * 119.99467 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.46738 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.85560 * 316.20046 * 14 13 12 16 16 C 1.53786 * 113.61121 * 87.50574 * 14 13 12 17 17 C 1.53786 * 87.07953 * 139.97940 * 16 14 13 18 18 H 1.09005 * 113.68835 * 89.12890 * 17 16 14 19 19 N 1.46504 * 113.61354 * 220.01331 * 17 16 14 20 20 C 1.36931 * 120.00234 * 252.49697 * 19 17 16 21 21 H 1.08001 * 120.00314 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00025 * 180.02562 * 20 19 17 23 23 N 1.31627 * 119.99971 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00188 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47157 * 89.99797 * 24 22 20 26 26 H 1.48502 * 109.47116 * 210.00093 * 24 22 20 27 27 H 1.48502 * 109.47046 * 329.99947 * 24 22 20 28 28 C 1.53773 * 87.08264 * 334.56620 * 17 16 14 29 29 H 1.08997 * 109.46931 * 299.99808 * 1 2 3 30 30 H 1.09000 * 109.47544 * 60.00098 * 1 2 3 31 31 H 1.09006 * 109.47182 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47264 * 239.99819 * 2 1 3 33 33 H 1.09000 * 109.47544 * 119.99902 * 2 1 3 34 34 H 1.08994 * 109.46752 * 305.85845 * 4 3 2 35 35 H 1.08998 * 109.45793 * 65.83082 * 4 3 2 36 36 H 1.08998 * 109.50125 * 60.76217 * 5 4 3 37 37 H 1.08995 * 109.50016 * 180.84242 * 5 4 3 38 38 H 1.09001 * 109.52226 * 297.74490 * 6 5 4 39 39 H 1.09000 * 109.52018 * 177.55473 * 6 5 4 40 40 H 1.09007 * 109.50096 * 182.40497 * 7 6 5 41 41 H 1.08993 * 109.50855 * 62.28317 * 7 6 5 42 42 H 0.96997 * 120.00147 * 0.02562 * 12 10 8 43 43 H 1.08995 * 109.47396 * 300.00209 * 13 12 10 44 44 H 1.08994 * 109.46982 * 60.00481 * 13 12 10 45 45 H 1.08999 * 113.61076 * 254.52564 * 16 14 13 46 46 H 1.08992 * 113.61484 * 25.43334 * 16 14 13 47 47 H 0.96997 * 119.99448 * 72.50242 * 19 17 16 48 48 H 0.96997 * 119.99766 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.61422 * 270.88775 * 28 17 16 50 50 H 1.08999 * 113.61784 * 139.97712 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7886 2.0248 1.3014 5 6 2.1758 3.5033 1.2203 6 6 3.6516 3.6186 0.8285 7 6 3.8746 2.9026 -0.5065 8 6 3.4382 1.4417 -0.3753 9 1 4.0366 0.9514 0.3925 10 6 3.6375 0.7378 -1.6929 11 8 2.7362 0.7017 -2.5035 12 7 4.8176 0.1488 -1.9704 13 6 5.0115 -0.5350 -3.2515 14 6 6.4269 -1.1129 -3.3120 15 1 7.1837 -0.4181 -2.9479 16 6 6.5425 -2.5234 -2.7103 17 6 7.4870 -2.8581 -3.8768 18 1 8.5348 -2.6422 -3.6677 19 7 7.2822 -4.1984 -4.4317 20 6 8.2022 -5.1850 -4.1961 21 1 9.0786 -4.9752 -3.6009 22 6 8.0084 -6.4547 -4.7224 23 7 6.9405 -6.7104 -5.4483 24 14 9.2629 -7.8008 -4.4004 25 1 8.8989 -8.5301 -3.1591 26 1 9.2780 -8.7474 -5.5445 27 1 10.6094 -7.1948 -4.2416 28 6 6.7754 -1.7483 -4.6683 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.7348 1.9394 1.5662 35 1 2.3950 1.5318 2.0611 36 1 1.5603 4.0000 0.4703 37 1 2.0183 3.9744 2.1905 38 1 4.2699 3.1560 1.5978 39 1 3.9204 4.6701 0.7273 40 1 4.9315 2.9445 -0.7697 41 1 3.2858 3.3899 -1.2836 42 1 5.5384 0.1775 -1.3220 43 1 4.2854 -1.3423 -3.3461 44 1 4.8735 0.1751 -4.0668 45 1 7.0289 -2.5435 -1.7351 46 1 5.6083 -3.0845 -2.7302 47 1 6.4950 -4.3870 -4.9661 48 1 6.8053 -7.5976 -5.8163 49 1 5.9048 -2.0975 -5.2235 50 1 7.4497 -1.1426 -5.2737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086278087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:27 Heat of formation + Delta-G solvation = -13.031540 kcal Electronic energy + Delta-G solvation = -25946.836518 eV Core-core repulsion = 22395.247643 eV Total energy + Delta-G solvation = -3551.588875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.58818 -38.88918 -37.94029 -34.83979 -34.40909 -33.29067 -31.67614 -30.21953 -30.02035 -27.49883 -25.11224 -24.92249 -24.28453 -23.58748 -21.72745 -21.08106 -20.70928 -19.93640 -19.05483 -17.41630 -17.02235 -16.55695 -15.73298 -15.60867 -15.03890 -14.84864 -14.77102 -14.73907 -14.24908 -13.90312 -13.77856 -13.58739 -13.47336 -13.16609 -12.87543 -12.78312 -12.08669 -11.94434 -11.92060 -11.83200 -11.66282 -11.44572 -11.38093 -11.25562 -11.13735 -10.89358 -10.84037 -10.63660 -10.53070 -10.23630 -10.13446 -9.83974 -9.67576 -9.45257 -9.01006 -8.87813 -8.57231 -6.97577 -5.79409 -3.08358 2.56302 2.98948 3.41596 3.46640 3.48555 3.62946 4.38193 4.44532 4.55785 4.57129 4.75936 4.78105 4.88169 4.96568 4.96745 5.02889 5.12579 5.16238 5.22713 5.30467 5.34701 5.38558 5.45531 5.49962 5.52450 5.54797 5.67540 5.75800 5.78079 5.82039 5.83972 5.87710 5.92970 5.99729 6.08113 6.11415 6.25201 6.30733 6.35049 6.45522 6.57814 6.72264 6.81658 6.82149 7.10018 7.48450 7.67616 8.21237 8.39143 9.50124 10.08471 10.42646 11.42965 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.023067 B = 0.002347 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.573364 B =11926.033049 C =12364.752006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.515 5.515 4 C 0.055 3.945 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.106 4.106 8 C 0.071 3.929 9 H 0.057 0.943 10 C 0.513 3.487 11 O -0.521 6.521 12 N -0.726 5.726 13 C 0.133 3.867 14 C -0.127 4.127 15 H 0.088 0.912 16 C -0.161 4.161 17 C 0.166 3.834 18 H 0.075 0.925 19 N -0.713 5.713 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.142 4.142 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.398 0.602 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.080 0.920 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 21.847 14.708 27.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.241 5.241 4 C -0.073 4.073 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.144 4.144 8 C -0.041 4.041 9 H 0.075 0.925 10 C 0.297 3.703 11 O -0.396 6.396 12 N -0.378 5.378 13 C 0.010 3.990 14 C -0.146 4.146 15 H 0.106 0.894 16 C -0.202 4.202 17 C 0.054 3.946 18 H 0.093 0.907 19 N -0.351 5.351 20 C -0.375 4.375 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.182 4.182 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.232 0.768 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.099 0.901 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.908 21.906 13.759 27.359 hybrid contribution 1.209 -1.359 0.965 2.060 sum -7.699 20.546 14.724 26.424 Atomic orbital electron populations 1.21705 0.94474 1.01479 1.02257 1.22201 0.96829 0.88115 1.01144 1.61699 1.14995 1.17974 1.29465 1.22169 1.01445 0.94745 0.88931 1.21615 0.96494 0.95775 1.01772 1.21576 0.96745 1.00680 0.96676 1.21533 1.01291 0.92614 0.98976 1.21600 0.90621 0.97375 0.94505 0.92525 1.20396 0.82402 0.78749 0.88722 1.90718 1.41343 1.58701 1.48860 1.46128 1.15120 1.56253 1.20348 1.21426 0.97027 0.96138 0.84409 1.22640 0.94874 0.97002 1.00111 0.89408 1.23948 1.02292 0.93928 1.00018 1.21519 0.95996 0.85416 0.91702 0.90686 1.42415 1.26513 1.05283 1.60857 1.19296 1.01483 0.90034 1.26719 0.91119 1.24777 0.98023 0.97781 1.00380 1.69664 1.27947 1.21418 1.38968 0.86189 0.80703 0.82055 0.77227 1.21712 1.21744 1.20740 1.23447 1.01076 0.98512 0.95167 0.93079 0.91560 0.92351 0.89860 0.95164 0.90106 0.94918 0.90830 0.91406 0.92031 0.91261 0.90995 0.90223 0.76779 0.91305 0.91769 0.92850 0.90390 0.78061 0.93435 0.90106 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.96 37.15 0.37 -1.00 16 2 C 0.04 0.49 5.32 -3.83 -0.02 0.47 16 3 N -0.52 -5.36 4.21 -228.08 -0.96 -6.33 16 4 C 0.05 0.43 5.30 -3.83 -0.02 0.41 16 5 C -0.12 -0.79 6.09 -26.64 -0.16 -0.96 16 6 C -0.12 -0.76 6.00 -26.61 -0.16 -0.92 16 7 C -0.11 -0.87 5.36 -26.65 -0.14 -1.01 16 8 C 0.07 0.70 2.23 -68.87 -0.15 0.55 16 9 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 10 C 0.51 6.46 5.69 -10.98 -0.06 6.40 16 11 O -0.52 -8.68 15.37 5.56 0.09 -8.60 16 12 N -0.73 -8.11 5.56 -60.30 -0.34 -8.44 16 13 C 0.13 1.74 5.51 -4.04 -0.02 1.71 16 14 C -0.13 -1.67 3.76 -89.80 -0.34 -2.00 16 15 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.16 -2.62 7.43 -25.91 -0.19 -2.81 16 17 C 0.17 3.18 4.48 -67.12 -0.30 2.88 16 18 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 19 N -0.71 -17.74 5.40 -52.64 -0.28 -18.03 16 20 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 24 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C -0.14 -2.25 7.39 -25.92 -0.19 -2.44 16 29 H 0.05 0.42 6.65 -51.93 -0.35 0.07 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.12 5.68 -51.92 -0.29 0.83 16 33 H 0.03 0.30 8.06 -51.93 -0.42 -0.11 16 34 H 0.08 0.60 6.49 -51.93 -0.34 0.26 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.40 3.46 8.47 -40.82 -0.35 3.12 16 43 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 1.42 7.89 -51.93 -0.41 1.01 16 47 H 0.39 10.24 7.92 -40.82 -0.32 9.92 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -32.03 389.78 -10.75 -42.77 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -9.19 Total: 9.04 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.64 Total: -6.10 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.86 Total: -60.26 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.03 -10.75 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086278087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.742 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds