Wall clock time and date at job start Fri Apr 10 2020 18:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47189 * 2 1 4 4 N 1.46901 * 109.47326 * 240.00123 * 2 1 3 5 5 C 1.47906 * 111.00142 * 63.43649 * 4 2 1 6 6 C 1.53987 * 107.05784 * 214.15847 * 5 4 2 7 7 C 1.54596 * 105.14185 * 1.22588 * 6 5 4 8 8 C 1.48541 * 110.99716 * 306.04115 * 4 2 1 9 9 H 1.08999 * 110.66484 * 41.28499 * 8 4 2 10 10 C 1.50697 * 110.66597 * 278.15654 * 8 4 2 11 11 O 1.21280 * 120.00187 * 359.97438 * 10 8 4 12 12 N 1.34773 * 119.99934 * 180.02562 * 10 8 4 13 13 C 1.46498 * 120.00055 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.47091 * 179.97438 * 13 12 10 15 15 H 1.09001 * 112.84706 * 316.19507 * 14 13 12 16 16 C 1.53779 * 113.61337 * 87.50026 * 14 13 12 17 17 C 1.53786 * 87.08177 * 139.97953 * 16 14 13 18 18 H 1.08996 * 113.69341 * 220.00610 * 17 16 14 19 19 N 1.46502 * 113.60901 * 89.11466 * 17 16 14 20 20 C 1.36940 * 119.99898 * 107.50792 * 19 17 16 21 21 H 1.08008 * 119.99541 * 359.97438 * 20 19 17 22 22 C 1.38809 * 120.00228 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00165 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47205 * 90.00255 * 24 22 20 26 26 H 1.48500 * 109.47322 * 210.00350 * 24 22 20 27 27 H 1.48503 * 109.47019 * 330.00478 * 24 22 20 28 28 C 1.53783 * 113.61245 * 184.99885 * 14 13 12 29 29 H 1.08994 * 109.46837 * 306.86204 * 1 2 3 30 30 H 1.09004 * 109.46643 * 66.86440 * 1 2 3 31 31 H 1.08995 * 109.46647 * 186.86199 * 1 2 3 32 32 H 1.09003 * 109.47156 * 119.99881 * 2 1 3 33 33 H 1.09003 * 109.46974 * 299.99992 * 3 2 1 34 34 H 1.08998 * 109.46829 * 59.99819 * 3 2 1 35 35 H 1.08996 * 109.47455 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.91205 * 333.50996 * 5 4 2 37 37 H 1.08994 * 109.91747 * 94.80017 * 5 4 2 38 38 H 1.09004 * 110.30817 * 120.14116 * 6 5 4 39 39 H 1.08997 * 110.30955 * 242.30586 * 6 5 4 40 40 H 1.09002 * 110.72444 * 140.32016 * 7 6 5 41 41 H 1.09003 * 110.72138 * 263.60073 * 7 6 5 42 42 H 0.97008 * 119.99946 * 359.97438 * 12 10 8 43 43 H 1.08996 * 109.47007 * 299.99115 * 13 12 10 44 44 H 1.09002 * 109.47206 * 59.99757 * 13 12 10 45 45 H 1.08996 * 113.61968 * 254.52928 * 16 14 13 46 46 H 1.09003 * 113.61291 * 25.43499 * 16 14 13 47 47 H 0.97001 * 119.99977 * 287.50362 * 19 17 16 48 48 H 0.96997 * 119.99795 * 179.97438 * 23 22 20 49 49 H 1.08993 * 113.61597 * 334.56496 * 28 14 13 50 50 H 1.09002 * 113.60993 * 105.47394 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 1.6143 0.0243 -2.4280 6 6 1.3566 -1.0418 -3.5088 7 6 1.6097 -2.3965 -2.8082 8 6 1.4279 -2.0505 -1.3089 9 1 0.3709 -2.0319 -1.0438 10 6 2.1780 -3.0290 -0.4424 11 8 3.1246 -2.6538 0.2165 12 7 1.7976 -4.3212 -0.4005 13 6 2.5272 -5.2726 0.4415 14 6 1.8958 -6.6599 0.3083 15 1 0.8065 -6.6338 0.3378 16 6 2.4627 -7.4852 -0.8590 17 6 2.4061 -8.7034 0.0780 18 1 3.2671 -9.3656 -0.0122 19 7 1.1294 -9.4204 0.0316 20 6 1.0533 -10.6445 -0.5778 21 1 1.9345 -11.0809 -1.0245 22 6 -0.1561 -11.3242 -0.6213 23 7 -1.2300 -10.7920 -0.0773 24 14 -0.2600 -12.9935 -1.4531 25 1 0.0196 -14.0604 -0.4587 26 1 -1.6222 -13.1836 -2.0132 27 1 0.7399 -13.0636 -2.5487 28 6 2.5126 -7.7101 1.2472 29 1 -0.3633 0.6165 0.8222 30 1 -0.3633 0.4038 -0.9451 31 1 -0.3632 -1.0203 0.1228 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4426 0.0005 36 1 0.7030 0.5929 -2.2425 37 1 2.4133 0.6927 -2.7487 38 1 0.3261 -0.9839 -3.8593 39 1 2.0480 -0.9114 -4.3413 40 1 0.8757 -3.1375 -3.1248 41 1 2.6230 -2.7480 -3.0028 42 1 1.0407 -4.6214 -0.9278 43 1 3.5687 -5.3150 0.1231 44 1 2.4778 -4.9496 1.4814 45 1 1.7869 -7.5580 -1.7110 46 1 3.4755 -7.2002 -1.1439 47 1 0.3380 -9.0282 0.4326 48 1 -2.0753 -11.2668 -0.1080 49 1 3.5390 -7.4866 1.5380 50 1 1.8770 -7.9644 2.0954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086364876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:34 Heat of formation + Delta-G solvation = -1.580568 kcal Electronic energy + Delta-G solvation = -26076.269583 eV Core-core repulsion = 22525.177259 eV Total energy + Delta-G solvation = -3551.092324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.58036 -39.01940 -38.06799 -34.78326 -34.44409 -33.17692 -30.51932 -29.83788 -29.26587 -27.54372 -27.02856 -25.05613 -23.93611 -23.25978 -22.02632 -21.56918 -20.38138 -19.46214 -18.34911 -17.46673 -17.22736 -16.79686 -15.88477 -15.46639 -14.99403 -14.91527 -14.54880 -14.28856 -14.21916 -14.03425 -13.64892 -13.49310 -13.14443 -12.93455 -12.81045 -12.65879 -12.27534 -12.10579 -11.92889 -11.87735 -11.76669 -11.61312 -11.41066 -11.29949 -11.04564 -11.01671 -10.86146 -10.72124 -10.48346 -10.18643 -10.04805 -9.70633 -9.67743 -9.43277 -8.94473 -8.87670 -8.54927 -7.01807 -5.82771 -3.11673 2.70052 3.05442 3.40387 3.45873 3.47260 3.82900 4.29588 4.31184 4.54105 4.60226 4.66068 4.80992 4.85084 4.89172 5.05993 5.08141 5.10366 5.16990 5.24907 5.28680 5.33656 5.41622 5.44002 5.49684 5.53208 5.55137 5.63870 5.70983 5.73252 5.74251 5.83639 5.87604 5.96790 5.97832 6.03338 6.11812 6.22013 6.37234 6.47400 6.57575 6.61886 6.74254 6.81743 6.90797 7.03958 7.60240 7.67295 8.33032 8.36607 9.47231 10.04916 10.39148 11.39735 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.023104 B = 0.002431 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.629024 B =11514.358307 C =11909.221795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.066 3.934 3 C -0.142 4.142 4 N -0.485 5.485 5 C 0.030 3.970 6 C -0.130 4.130 7 C -0.113 4.113 8 C 0.038 3.962 9 H 0.084 0.916 10 C 0.521 3.479 11 O -0.526 6.526 12 N -0.726 5.726 13 C 0.133 3.867 14 C -0.119 4.119 15 H 0.092 0.908 16 C -0.167 4.167 17 C 0.167 3.833 18 H 0.062 0.938 19 N -0.706 5.706 20 C -0.241 4.241 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.148 4.148 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.400 0.600 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.077 0.923 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 23.497 -3.474 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.042 4.042 3 C -0.200 4.200 4 N -0.209 5.209 5 C -0.097 4.097 6 C -0.168 4.168 7 C -0.151 4.151 8 C -0.074 4.074 9 H 0.102 0.898 10 C 0.305 3.695 11 O -0.401 6.401 12 N -0.378 5.378 13 C 0.010 3.990 14 C -0.138 4.138 15 H 0.110 0.890 16 C -0.208 4.208 17 C 0.055 3.945 18 H 0.080 0.920 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.188 4.188 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.234 0.766 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.977 23.564 -3.014 24.272 hybrid contribution -1.776 -0.822 -0.584 2.042 sum 3.201 22.742 -3.598 23.246 Atomic orbital electron populations 1.22554 0.97807 1.02195 1.02499 1.21875 0.92318 0.95654 0.94396 1.21831 1.02149 0.94500 1.01511 1.64715 1.54476 1.00064 1.01604 1.22954 1.00026 0.96829 0.89936 1.22399 1.01988 0.94145 0.98279 1.22456 1.03364 0.97723 0.91579 1.22842 0.97829 0.90603 0.96135 0.89811 1.20213 0.84545 0.82532 0.82187 1.90681 1.27942 1.78201 1.43319 1.46059 1.35082 1.08515 1.48163 1.21441 0.95705 0.87689 0.94161 1.22706 1.00266 0.91345 0.99474 0.88977 1.23876 0.99617 0.99656 0.97686 1.21062 0.90537 0.90594 0.92340 0.91988 1.42172 1.05477 1.19560 1.67233 1.19296 0.94873 0.94388 1.28695 0.90990 1.24762 0.95731 0.99011 1.01423 1.69661 0.99755 1.38884 1.49831 0.86170 0.76831 0.84045 0.79024 1.21655 1.21768 1.20699 1.23445 1.00234 0.96791 0.98315 0.91698 0.92133 0.92336 0.89102 0.92759 0.92248 0.91667 0.92933 0.90113 0.91201 0.90610 0.90077 0.90126 0.76589 0.91669 0.92036 0.91547 0.91406 0.78133 0.93451 0.90470 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 8.36 37.16 0.31 -1.23 16 2 C 0.07 0.65 2.91 -67.71 -0.20 0.45 16 3 C -0.14 -1.16 9.02 37.16 0.34 -0.82 16 4 N -0.48 -5.11 4.63 -216.07 -1.00 -6.11 16 5 C 0.03 0.24 5.12 -2.76 -0.01 0.23 16 6 C -0.13 -0.94 6.93 -25.38 -0.18 -1.11 16 7 C -0.11 -0.98 6.49 -24.87 -0.16 -1.14 16 8 C 0.04 0.39 2.50 -66.94 -0.17 0.22 16 9 H 0.08 0.77 5.58 -51.93 -0.29 0.48 16 10 C 0.52 6.92 7.05 -10.99 -0.08 6.84 16 11 O -0.53 -9.01 15.82 5.56 0.09 -8.92 16 12 N -0.73 -8.85 5.55 -60.30 -0.33 -9.19 16 13 C 0.13 1.80 5.51 -4.04 -0.02 1.78 16 14 C -0.12 -1.76 3.63 -89.80 -0.33 -2.09 16 15 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 16 C -0.17 -2.74 7.43 -25.92 -0.19 -2.94 16 17 C 0.17 3.22 4.56 -67.11 -0.31 2.92 16 18 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 19 N -0.71 -17.20 5.31 -52.63 -0.28 -17.48 16 20 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 24 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C -0.15 -2.36 7.39 -25.91 -0.19 -2.56 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.44 5.98 -51.93 -0.31 0.13 16 31 H 0.06 0.50 6.35 -51.93 -0.33 0.17 16 32 H 0.09 1.10 7.52 -51.93 -0.39 0.71 16 33 H 0.05 0.39 6.85 -51.93 -0.36 0.03 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.37 5.27 -51.93 -0.27 0.10 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 42 H 0.40 4.20 8.47 -40.82 -0.35 3.85 16 43 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 47 H 0.38 9.90 7.90 -40.82 -0.32 9.58 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 50 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -31.51 387.21 -10.31 -41.82 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -8.89 Total: 10.58 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.43 Total: -6.65 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.89 Total: -59.67 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.51 -10.31 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086364876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.242 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds