Wall clock time and date at job start Fri Apr 10 2020 18:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47189 * 2 1 4 4 N 1.46901 * 109.47326 * 240.00123 * 2 1 3 5 5 C 1.47906 * 111.00142 * 63.43649 * 4 2 1 6 6 C 1.53987 * 107.05784 * 214.15847 * 5 4 2 7 7 C 1.54596 * 105.14185 * 1.22588 * 6 5 4 8 8 C 1.48541 * 110.99716 * 306.04115 * 4 2 1 9 9 H 1.08999 * 110.66484 * 41.28499 * 8 4 2 10 10 C 1.50697 * 110.66597 * 278.15654 * 8 4 2 11 11 O 1.21280 * 120.00187 * 359.97438 * 10 8 4 12 12 N 1.34773 * 119.99934 * 180.02562 * 10 8 4 13 13 C 1.46498 * 120.00055 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.47091 * 179.97438 * 13 12 10 15 15 H 1.09001 * 112.84706 * 316.19507 * 14 13 12 16 16 C 1.53779 * 113.61337 * 87.50026 * 14 13 12 17 17 C 1.53786 * 87.08177 * 139.97953 * 16 14 13 18 18 H 1.08996 * 113.69341 * 220.00610 * 17 16 14 19 19 N 1.46502 * 113.60901 * 89.11466 * 17 16 14 20 20 C 1.36940 * 119.99898 * 107.50792 * 19 17 16 21 21 H 1.08008 * 119.99541 * 359.97438 * 20 19 17 22 22 C 1.38809 * 120.00228 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00165 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47205 * 90.00255 * 24 22 20 26 26 H 1.48500 * 109.47322 * 210.00350 * 24 22 20 27 27 H 1.48503 * 109.47019 * 330.00478 * 24 22 20 28 28 C 1.53783 * 113.61245 * 184.99885 * 14 13 12 29 29 H 1.08994 * 109.46837 * 306.86204 * 1 2 3 30 30 H 1.09004 * 109.46643 * 66.86440 * 1 2 3 31 31 H 1.08995 * 109.46647 * 186.86199 * 1 2 3 32 32 H 1.09003 * 109.47156 * 119.99881 * 2 1 3 33 33 H 1.09003 * 109.46974 * 299.99992 * 3 2 1 34 34 H 1.08998 * 109.46829 * 59.99819 * 3 2 1 35 35 H 1.08996 * 109.47455 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.91205 * 333.50996 * 5 4 2 37 37 H 1.08994 * 109.91747 * 94.80017 * 5 4 2 38 38 H 1.09004 * 110.30817 * 120.14116 * 6 5 4 39 39 H 1.08997 * 110.30955 * 242.30586 * 6 5 4 40 40 H 1.09002 * 110.72444 * 140.32016 * 7 6 5 41 41 H 1.09003 * 110.72138 * 263.60073 * 7 6 5 42 42 H 0.97008 * 119.99946 * 359.97438 * 12 10 8 43 43 H 1.08996 * 109.47007 * 299.99115 * 13 12 10 44 44 H 1.09002 * 109.47206 * 59.99757 * 13 12 10 45 45 H 1.08996 * 113.61968 * 254.52928 * 16 14 13 46 46 H 1.09003 * 113.61291 * 25.43499 * 16 14 13 47 47 H 0.97001 * 119.99977 * 287.50362 * 19 17 16 48 48 H 0.96997 * 119.99795 * 179.97438 * 23 22 20 49 49 H 1.08993 * 113.61597 * 334.56496 * 28 14 13 50 50 H 1.09002 * 113.60993 * 105.47394 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 1.6143 0.0243 -2.4280 6 6 1.3566 -1.0418 -3.5088 7 6 1.6097 -2.3965 -2.8082 8 6 1.4279 -2.0505 -1.3089 9 1 0.3709 -2.0319 -1.0438 10 6 2.1780 -3.0290 -0.4424 11 8 3.1246 -2.6538 0.2165 12 7 1.7976 -4.3212 -0.4005 13 6 2.5272 -5.2726 0.4415 14 6 1.8958 -6.6599 0.3083 15 1 0.8065 -6.6338 0.3378 16 6 2.4627 -7.4852 -0.8590 17 6 2.4061 -8.7034 0.0780 18 1 3.2671 -9.3656 -0.0122 19 7 1.1294 -9.4204 0.0316 20 6 1.0533 -10.6445 -0.5778 21 1 1.9345 -11.0809 -1.0245 22 6 -0.1561 -11.3242 -0.6213 23 7 -1.2300 -10.7920 -0.0773 24 14 -0.2600 -12.9935 -1.4531 25 1 0.0196 -14.0604 -0.4587 26 1 -1.6222 -13.1836 -2.0132 27 1 0.7399 -13.0636 -2.5487 28 6 2.5126 -7.7101 1.2472 29 1 -0.3633 0.6165 0.8222 30 1 -0.3633 0.4038 -0.9451 31 1 -0.3632 -1.0203 0.1228 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4426 0.0005 36 1 0.7030 0.5929 -2.2425 37 1 2.4133 0.6927 -2.7487 38 1 0.3261 -0.9839 -3.8593 39 1 2.0480 -0.9114 -4.3413 40 1 0.8757 -3.1375 -3.1248 41 1 2.6230 -2.7480 -3.0028 42 1 1.0407 -4.6214 -0.9278 43 1 3.5687 -5.3150 0.1231 44 1 2.4778 -4.9496 1.4814 45 1 1.7869 -7.5580 -1.7110 46 1 3.4755 -7.2002 -1.1439 47 1 0.3380 -9.0282 0.4326 48 1 -2.0753 -11.2668 -0.1080 49 1 3.5390 -7.4866 1.5380 50 1 1.8770 -7.9644 2.0954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086364876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:32 Heat of formation + Delta-G solvation = -23.053869 kcal Electronic energy + Delta-G solvation = -26077.200735 eV Core-core repulsion = 22525.177259 eV Total energy + Delta-G solvation = -3552.023476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.46379 -40.24908 -39.18721 -35.97636 -35.38402 -34.83983 -32.14217 -30.87875 -30.00256 -28.47405 -27.98891 -26.43123 -25.72565 -24.27271 -23.06095 -22.57658 -21.28901 -20.32245 -19.71090 -19.30517 -18.23794 -17.62585 -17.00451 -16.66232 -16.35227 -16.02117 -15.79090 -15.52596 -15.18529 -15.04251 -14.85230 -14.64760 -14.38219 -14.10478 -13.81312 -13.58928 -13.31740 -13.24653 -12.94808 -12.90480 -12.75420 -12.67906 -12.52838 -12.43064 -12.25580 -12.15173 -12.06620 -12.01089 -11.67760 -11.52797 -11.47005 -11.37578 -10.98368 -10.86512 -10.63348 -10.02560 -9.27219 -8.99504 -7.95126 -5.23244 1.48524 1.49560 1.57990 1.67133 2.11087 2.56120 3.06280 3.37588 3.56869 3.60394 3.72520 3.80239 3.84600 3.92875 4.06137 4.08665 4.13311 4.16813 4.24200 4.33248 4.39289 4.41500 4.54023 4.65830 4.69700 4.73768 4.76617 4.78851 4.87028 4.91173 4.93364 4.98585 4.99817 5.08946 5.10073 5.12131 5.22325 5.30428 5.32469 5.36211 5.37932 5.50533 5.57134 5.66827 5.87914 6.13075 6.28745 6.61303 7.30742 7.33783 8.10768 8.33353 9.28189 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.023104 B = 0.002431 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.629024 B =11514.358307 C =11909.221795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.065 3.935 3 C -0.137 4.137 4 N -0.508 5.508 5 C 0.030 3.970 6 C -0.125 4.125 7 C -0.111 4.111 8 C 0.041 3.959 9 H 0.099 0.901 10 C 0.518 3.482 11 O -0.569 6.569 12 N -0.719 5.719 13 C 0.143 3.857 14 C -0.101 4.101 15 H 0.082 0.918 16 C -0.151 4.151 17 C 0.144 3.856 18 H 0.059 0.941 19 N -0.719 5.719 20 C -0.242 4.242 21 H 0.076 0.924 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.972 3.028 25 H -0.288 1.288 26 H -0.296 1.296 27 H -0.270 1.270 28 C -0.136 4.136 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.410 0.590 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.089 0.911 47 H 0.374 0.626 48 H 0.251 0.749 49 H 0.103 0.897 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 24.562 -4.714 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.044 4.044 3 C -0.194 4.194 4 N -0.233 5.233 5 C -0.097 4.097 6 C -0.163 4.163 7 C -0.150 4.150 8 C -0.071 4.071 9 H 0.116 0.884 10 C 0.305 3.695 11 O -0.448 6.448 12 N -0.371 5.371 13 C 0.019 3.981 14 C -0.120 4.120 15 H 0.101 0.899 16 C -0.192 4.192 17 C 0.034 3.966 18 H 0.077 0.923 19 N -0.358 5.358 20 C -0.373 4.373 21 H 0.094 0.906 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.801 3.199 25 H -0.216 1.216 26 H -0.222 1.222 27 H -0.194 1.194 28 C -0.175 4.175 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.246 0.754 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.207 0.793 48 H 0.060 0.940 49 H 0.122 0.878 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.050 24.643 -4.278 25.516 hybrid contribution -1.683 -1.119 -0.164 2.027 sum 3.367 23.524 -4.441 24.175 Atomic orbital electron populations 1.22481 0.96267 1.02069 1.03530 1.21818 0.93526 0.95974 0.93091 1.21787 1.01170 0.93759 1.02712 1.64655 1.55468 1.00448 1.02708 1.23009 1.00601 0.97012 0.89077 1.22409 1.03281 0.92626 0.97945 1.22478 1.02906 0.99111 0.90491 1.22847 0.97839 0.89966 0.96442 0.88402 1.20804 0.84054 0.82918 0.81742 1.90659 1.29992 1.78913 1.45198 1.45994 1.35095 1.08231 1.47800 1.21236 0.95525 0.87012 0.94292 1.22484 0.99632 0.91807 0.98035 0.89936 1.23690 1.00600 0.97952 0.96930 1.21381 0.88343 0.91505 0.95377 0.92287 1.42296 1.06866 1.19334 1.67255 1.19669 0.94844 0.95245 1.27579 0.90602 1.25537 0.95641 1.02580 1.02970 1.69807 1.00049 1.40297 1.51808 0.85161 0.76594 0.79930 0.78205 1.21565 1.22233 1.19446 1.23354 1.01705 0.95534 0.96916 0.90917 0.90814 0.92982 0.92337 0.91353 0.91201 0.93147 0.91607 0.90101 0.89400 0.89980 0.88477 0.91782 0.75424 0.91824 0.92337 0.93135 0.89222 0.79336 0.94018 0.87844 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 8.36 71.98 0.60 -2.06 16 2 C 0.06 1.22 2.91 44.92 0.13 1.36 16 3 C -0.14 -2.09 9.02 71.98 0.65 -1.44 16 4 N -0.51 -10.25 4.63 -837.51 -3.88 -14.13 16 5 C 0.03 0.42 5.12 86.44 0.44 0.86 16 6 C -0.12 -1.47 6.93 31.47 0.22 -1.26 16 7 C -0.11 -1.73 6.49 31.80 0.21 -1.52 16 8 C 0.04 0.79 2.50 44.51 0.11 0.90 16 9 H 0.10 1.62 5.58 -2.39 -0.01 1.61 16 10 C 0.52 13.54 7.05 87.66 0.62 14.16 16 11 O -0.57 -19.71 15.82 -3.03 -0.05 -19.75 16 12 N -0.72 -16.82 5.55 -463.07 -2.57 -19.39 16 13 C 0.14 3.69 5.51 86.38 0.48 4.17 16 14 C -0.10 -2.86 3.63 -10.27 -0.04 -2.90 16 15 H 0.08 2.55 8.14 -2.39 -0.02 2.54 16 16 C -0.15 -4.76 7.43 31.12 0.23 -4.53 16 17 C 0.14 5.45 4.56 45.52 0.21 5.66 16 18 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 19 N -0.72 -35.25 5.31 -320.42 -1.70 -36.95 16 20 C -0.24 -13.17 9.97 84.03 0.84 -12.33 16 21 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 23 N -0.97 -58.22 13.06 21.65 0.28 -57.93 16 24 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 28 C -0.14 -4.16 7.39 31.12 0.23 -3.93 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.86 5.98 -2.38 -0.01 0.85 16 31 H 0.05 0.81 6.35 -2.39 -0.02 0.79 16 32 H 0.06 1.47 7.52 -2.39 -0.02 1.46 16 33 H 0.07 0.84 6.85 -2.39 -0.02 0.82 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.74 5.27 -2.39 -0.01 0.73 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.21 8.05 -2.39 -0.02 1.19 16 42 H 0.41 8.04 8.47 -92.70 -0.79 7.25 16 43 H 0.06 1.70 7.84 -2.39 -0.02 1.68 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.09 2.46 7.90 -2.39 -0.02 2.44 16 47 H 0.37 19.62 7.90 -92.71 -0.73 18.89 16 48 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 49 H 0.10 2.65 8.10 -2.39 -0.02 2.63 16 50 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -68.58 387.21 -1.09 -69.67 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.59 Total: 37.66 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 5.39 Total: -6.64 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -7.87 Total: -128.40 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.05 Total: -19.75 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.58 -1.09 -69.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086364876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.619 kcal (2) G-P(sol) polarization free energy of solvation -68.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds