Wall clock time and date at job start Fri Apr 10 2020 18:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 109.46836 * 2 1 4 4 N 1.46896 * 109.47239 * 119.99920 * 2 1 3 5 5 C 1.47442 * 111.00153 * 54.15772 * 4 2 1 6 6 C 1.54324 * 107.23312 * 123.25476 * 5 4 2 7 7 C 1.55137 * 103.01748 * 22.28584 * 6 5 4 8 8 C 1.47850 * 110.99879 * 175.00287 * 4 2 1 9 9 H 1.09000 * 110.37092 * 332.57574 * 8 4 2 10 10 C 1.50699 * 110.37406 * 94.80516 * 8 4 2 11 11 O 1.21280 * 120.00005 * 0.02562 * 10 8 4 12 12 N 1.34774 * 119.99733 * 179.97438 * 10 8 4 13 13 C 1.46507 * 119.99822 * 180.02562 * 12 10 8 14 14 C 1.53010 * 109.46885 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.84612 * 316.19304 * 14 13 12 16 16 C 1.53775 * 113.69051 * 87.46298 * 14 13 12 17 17 C 1.53775 * 87.08097 * 139.98978 * 16 14 13 18 18 H 1.08996 * 113.69638 * 220.00692 * 17 16 14 19 19 N 1.46506 * 113.61531 * 89.11408 * 17 16 14 20 20 C 1.36937 * 119.99708 * 107.50072 * 19 17 16 21 21 H 1.07996 * 120.00283 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99959 * 179.97438 * 20 19 17 23 23 N 1.31622 * 119.99483 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00333 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46740 * 90.00290 * 24 22 20 26 26 H 1.48490 * 109.47387 * 210.00099 * 24 22 20 27 27 H 1.48495 * 109.47160 * 330.00661 * 24 22 20 28 28 C 1.53777 * 113.61090 * 184.99939 * 14 13 12 29 29 H 1.09003 * 109.47055 * 299.99848 * 1 2 3 30 30 H 1.08994 * 109.47574 * 59.99902 * 1 2 3 31 31 H 1.08997 * 109.47289 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47129 * 240.00663 * 2 1 3 33 33 H 1.08996 * 109.46983 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46746 * 300.00002 * 3 2 1 35 35 H 1.08997 * 109.46834 * 59.99944 * 3 2 1 36 36 H 1.08994 * 109.89183 * 242.66215 * 5 4 2 37 37 H 1.09000 * 109.88375 * 3.69179 * 5 4 2 38 38 H 1.09001 * 110.70545 * 140.66442 * 6 5 4 39 39 H 1.09002 * 110.70516 * 263.73004 * 6 5 4 40 40 H 1.09000 * 110.99187 * 206.25305 * 7 6 5 41 41 H 1.09001 * 110.99498 * 82.43773 * 7 6 5 42 42 H 0.97004 * 120.00158 * 0.02562 * 12 10 8 43 43 H 1.08990 * 109.47265 * 60.00068 * 13 12 10 44 44 H 1.09000 * 109.46747 * 299.99640 * 13 12 10 45 45 H 1.09003 * 113.61490 * 25.44425 * 16 14 13 46 46 H 1.09002 * 113.61432 * 254.54235 * 16 14 13 47 47 H 0.97000 * 120.00117 * 287.50478 * 19 17 16 48 48 H 0.97000 * 119.99481 * 179.97438 * 23 22 20 49 49 H 1.09003 * 113.61538 * 105.38727 * 28 14 13 50 50 H 1.09005 * 113.61509 * 334.48338 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4359 -2.0422 1.3056 6 6 2.6084 -3.0433 1.3738 7 6 3.7870 -2.1676 1.8744 8 6 3.4927 -0.8171 1.1749 9 1 3.8551 -0.8334 0.1470 10 6 4.1280 0.3176 1.9362 11 8 3.4318 1.1622 2.4586 12 7 5.4698 0.3933 2.0375 13 6 6.0875 1.4962 2.7781 14 6 7.6098 1.3471 2.7395 15 1 7.9393 0.3233 2.9163 16 6 8.2637 2.0013 1.5110 17 6 9.3845 2.4686 2.4545 18 1 9.7340 3.4809 2.2519 19 7 10.4797 1.5046 2.5875 20 6 11.6910 1.7595 2.0020 21 1 11.8391 2.6713 1.4425 22 6 12.7289 0.8464 2.1284 23 7 12.5485 -0.2645 2.8107 24 14 14.3815 1.1944 1.3303 25 1 15.2464 1.9334 2.2849 26 1 15.0334 -0.0880 0.9624 27 1 14.1786 2.0147 0.1092 28 6 8.3526 2.3893 3.5920 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 3.1299 1.4427 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 0.8329 -2.1153 2.2106 37 1 0.8189 -2.2491 0.4313 38 1 2.3927 -3.8417 2.0840 39 1 2.8221 -3.4543 0.3871 40 1 4.7433 -2.5762 1.5479 41 1 3.7602 -2.0596 2.9588 42 1 6.0266 -0.2824 1.6200 43 1 5.7461 1.4751 3.8130 44 1 5.8040 2.4444 2.3212 45 1 7.6794 2.8188 1.0887 46 1 8.5958 1.2848 0.7597 47 1 10.3468 0.6858 3.0903 48 1 13.2736 -0.9027 2.8988 49 1 8.7565 1.9861 4.5206 50 1 7.7925 3.3129 3.7386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086364877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:39 Heat of formation + Delta-G solvation = -3.676787 kcal Electronic energy + Delta-G solvation = -26138.092574 eV Core-core repulsion = 22586.909351 eV Total energy + Delta-G solvation = -3551.183223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.50229 -38.94750 -37.96544 -34.84855 -34.39206 -33.16427 -30.58823 -29.87565 -29.45057 -27.46851 -26.71605 -25.05172 -23.87723 -23.08620 -21.76222 -21.57165 -20.46514 -19.79541 -18.40477 -17.52501 -17.12177 -16.77796 -15.78244 -15.35371 -15.26819 -14.83578 -14.72178 -14.20328 -14.03914 -13.75398 -13.63367 -13.44420 -13.09454 -12.89535 -12.76807 -12.51096 -12.31990 -12.15807 -11.93859 -11.88748 -11.52599 -11.45312 -11.37311 -11.17806 -11.06527 -11.04599 -10.99904 -10.85931 -10.47625 -10.18492 -10.02525 -9.70355 -9.63592 -9.41050 -8.92212 -8.85430 -8.50744 -7.01623 -5.82611 -3.11474 2.75095 3.04634 3.40423 3.45883 3.47292 3.80597 4.24573 4.32495 4.54213 4.59353 4.77256 4.81144 4.86960 4.89826 5.07194 5.10737 5.11509 5.16910 5.25207 5.32185 5.44216 5.46571 5.50551 5.52063 5.61198 5.64887 5.67705 5.68286 5.72781 5.76245 5.88274 5.89091 5.97235 6.00716 6.12341 6.21986 6.26939 6.37636 6.50092 6.60146 6.67087 6.74560 6.87116 6.91541 7.04250 7.64348 7.67419 8.36761 8.38646 9.47395 10.05139 10.39401 11.39886 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.002467 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.416858 B =11349.115369 C =11807.353608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.139 4.139 4 N -0.502 5.502 5 C 0.040 3.960 6 C -0.141 4.141 7 C -0.120 4.120 8 C 0.054 3.946 9 H 0.078 0.922 10 C 0.519 3.481 11 O -0.520 6.520 12 N -0.728 5.728 13 C 0.134 3.866 14 C -0.119 4.119 15 H 0.092 0.908 16 C -0.168 4.168 17 C 0.167 3.833 18 H 0.062 0.938 19 N -0.706 5.706 20 C -0.241 4.241 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.148 4.148 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.399 0.601 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.068 0.932 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.361 -3.676 -4.897 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.196 4.196 4 N -0.227 5.227 5 C -0.087 4.087 6 C -0.180 4.180 7 C -0.158 4.158 8 C -0.058 4.058 9 H 0.095 0.905 10 C 0.303 3.697 11 O -0.394 6.394 12 N -0.381 5.381 13 C 0.011 3.989 14 C -0.138 4.138 15 H 0.110 0.890 16 C -0.209 4.209 17 C 0.055 3.945 18 H 0.080 0.920 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.188 4.188 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.233 0.767 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.086 0.914 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.857 -2.674 -4.178 24.368 hybrid contribution 1.415 -1.026 -1.211 2.127 sum -22.442 -3.701 -5.389 23.375 Atomic orbital electron populations 1.21940 0.94148 1.01854 1.02481 1.21802 0.95769 0.95710 0.90034 1.21842 1.00782 0.94870 1.02132 1.63200 1.03466 1.17161 1.38853 1.22904 0.96867 0.86837 1.02088 1.22793 0.95105 0.98288 1.01791 1.22693 0.99103 0.92554 1.01444 1.22497 0.89864 0.94402 0.99061 0.90474 1.20253 0.82003 0.86448 0.80974 1.90676 1.61982 1.40466 1.46299 1.46076 1.06406 1.29438 1.56172 1.21419 0.92417 0.89185 0.95876 1.22701 0.91475 1.00132 0.99457 0.88969 1.23875 0.99940 1.00064 0.96997 1.21058 0.87088 0.93838 0.92540 0.92013 1.42171 1.08336 1.21466 1.62462 1.19293 0.88613 1.03374 1.25982 0.91005 1.24764 0.98432 0.96863 1.00869 1.69663 1.32404 1.10577 1.45465 0.86168 0.84095 0.76921 0.78883 1.21651 1.21767 1.20716 1.23443 0.98373 0.97999 0.98962 0.91509 0.92186 0.92569 0.94476 0.93277 0.92900 0.90744 0.90280 0.92057 0.90277 0.91201 0.89822 0.89959 0.76696 0.91996 0.91814 0.91464 0.91586 0.78120 0.93449 0.91362 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.95 37.16 0.33 -0.84 16 2 C 0.07 0.72 2.38 -67.71 -0.16 0.56 16 3 C -0.14 -1.52 7.96 37.16 0.30 -1.22 16 4 N -0.50 -5.30 4.28 -216.83 -0.93 -6.22 16 5 C 0.04 0.33 6.14 -2.83 -0.02 0.31 16 6 C -0.14 -1.00 6.94 -24.91 -0.17 -1.17 16 7 C -0.12 -1.02 6.47 -24.59 -0.16 -1.18 16 8 C 0.05 0.56 2.33 -67.34 -0.16 0.40 16 9 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 10 C 0.52 6.81 5.77 -10.99 -0.06 6.74 16 11 O -0.52 -8.65 14.66 5.56 0.08 -8.57 16 12 N -0.73 -8.87 5.54 -60.29 -0.33 -9.20 16 13 C 0.13 1.81 5.52 -4.03 -0.02 1.79 16 14 C -0.12 -1.76 3.63 -89.81 -0.33 -2.09 16 15 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 16 C -0.17 -2.76 7.43 -25.92 -0.19 -2.95 16 17 C 0.17 3.23 4.56 -67.12 -0.31 2.92 16 18 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 19 N -0.71 -17.23 5.31 -52.64 -0.28 -17.51 16 20 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 24 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.39 6.16 -51.93 -0.32 0.07 16 32 H 0.04 0.34 7.97 -51.93 -0.41 -0.08 16 33 H 0.05 0.60 6.24 -51.93 -0.32 0.27 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.97 7.61 -51.93 -0.40 0.57 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.43 5.93 -51.93 -0.31 0.12 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 42 H 0.40 4.22 8.47 -40.82 -0.35 3.87 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 45 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.38 9.92 7.90 -40.82 -0.32 9.60 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 50 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -31.33 388.32 -10.40 -41.73 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -9.10 Total: 10.30 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.39 Total: -6.49 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.82 Total: -59.84 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.08 Total: -8.57 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.33 -10.40 -41.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086364877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.050 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds