Wall clock time and date at job start Fri Apr 10 2020 18:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46681 * 2 1 4 4 N 1.46901 * 109.46796 * 180.02562 * 3 2 1 5 5 C 1.47845 * 111.00338 * 56.83023 * 4 3 2 6 6 C 1.54909 * 104.79799 * 146.36339 * 5 4 3 7 7 C 1.55144 * 101.65208 * 322.93307 * 6 5 4 8 8 C 1.47437 * 111.00058 * 177.67389 * 4 3 2 9 9 H 1.09000 * 109.89237 * 117.16998 * 8 4 3 10 10 C 1.50709 * 109.89003 * 356.14603 * 8 4 3 11 11 O 1.21281 * 119.99584 * 300.63050 * 10 8 4 12 12 N 1.34771 * 120.00123 * 120.62499 * 10 8 4 13 13 C 1.46495 * 120.00063 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47065 * 180.02562 * 13 12 10 15 15 H 1.08993 * 112.91041 * 316.25565 * 14 13 12 16 16 C 1.53781 * 113.61121 * 87.51097 * 14 13 12 17 17 C 1.53787 * 87.08056 * 139.98108 * 16 14 13 18 18 H 1.09003 * 113.68708 * 220.00520 * 17 16 14 19 19 N 1.46495 * 113.61553 * 89.11643 * 17 16 14 20 20 C 1.36936 * 120.00262 * 107.50108 * 19 17 16 21 21 H 1.07997 * 119.99757 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99874 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99392 * 179.72355 * 22 20 19 24 24 Si 1.86798 * 119.99950 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46853 * 269.72133 * 24 22 20 26 26 H 1.48495 * 109.47174 * 29.72451 * 24 22 20 27 27 H 1.48500 * 109.46767 * 149.72600 * 24 22 20 28 28 C 1.53775 * 87.07814 * 334.56198 * 17 16 14 29 29 H 1.08995 * 109.47683 * 299.99978 * 1 2 3 30 30 H 1.09002 * 109.47551 * 60.00492 * 1 2 3 31 31 H 1.09001 * 109.47057 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46979 * 240.00144 * 2 1 3 33 33 H 1.08998 * 109.47094 * 119.99367 * 2 1 3 34 34 H 1.08990 * 109.47166 * 60.00104 * 3 2 1 35 35 H 1.08998 * 109.46839 * 299.99523 * 3 2 1 36 36 H 1.09000 * 110.37170 * 265.19604 * 5 4 3 37 37 H 1.09000 * 110.37164 * 27.53472 * 5 4 3 38 38 H 1.08998 * 110.98731 * 81.01820 * 6 5 4 39 39 H 1.09000 * 110.99011 * 204.79943 * 6 5 4 40 40 H 1.09000 * 110.70068 * 277.27067 * 7 6 5 41 41 H 1.08997 * 110.70639 * 154.03712 * 7 6 5 42 42 H 0.97003 * 120.00241 * 0.02562 * 12 10 8 43 43 H 1.09004 * 109.46774 * 60.01006 * 13 12 10 44 44 H 1.08998 * 109.47774 * 300.00702 * 13 12 10 45 45 H 1.08999 * 113.61810 * 25.42990 * 16 14 13 46 46 H 1.09005 * 113.60963 * 254.52292 * 16 14 13 47 47 H 0.97006 * 119.99942 * 287.49362 * 19 17 16 48 48 H 0.97006 * 119.99790 * 180.27402 * 23 22 20 49 49 H 1.09009 * 113.61079 * 139.98441 * 28 17 16 50 50 H 1.08995 * 113.61814 * 270.88372 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0383 0.6876 -1.1563 6 6 5.3441 1.4246 -1.5457 7 6 4.9552 2.9052 -1.2939 8 6 4.0372 2.8179 -0.0565 9 1 4.6075 3.0332 0.8472 10 6 2.9008 3.7987 -0.1910 11 8 2.1501 3.7301 -1.1411 12 7 2.7189 4.7517 0.7443 13 6 1.6146 5.7053 0.6132 14 6 1.6335 6.6735 1.7979 15 1 1.8090 6.1745 2.7509 16 6 2.5274 7.9044 1.5732 17 6 1.4312 8.7295 2.2679 18 1 1.2536 9.7000 1.8044 19 7 1.5928 8.8143 3.7214 20 6 1.9985 9.9883 4.2979 21 1 2.1997 10.8515 3.6810 22 6 2.1511 10.0687 5.6753 23 7 2.5463 11.1955 6.2288 24 14 1.8038 8.5752 6.7423 25 1 0.3773 8.5829 7.1552 26 1 2.0892 7.3388 5.9711 27 1 2.6686 8.6170 7.9487 28 6 0.4396 7.6426 1.8205 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 4.2544 -0.3417 -0.8703 37 1 3.3281 0.7117 -1.9828 38 1 6.1697 1.1228 -0.9013 39 1 5.5888 1.2574 -2.5946 40 1 4.4134 3.3119 -2.1478 41 1 5.8395 3.5043 -1.0763 42 1 3.3196 4.8067 1.5040 43 1 0.6679 5.1653 0.6001 44 1 1.7264 6.2655 -0.3151 45 1 2.6650 8.1582 0.5221 46 1 3.4653 7.8700 2.1277 47 1 1.4123 8.0388 4.2755 48 1 2.6568 11.2506 7.1910 49 1 -0.3081 7.3966 2.5747 50 1 0.0064 7.8247 0.8371 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086381972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:47 Heat of formation + Delta-G solvation = -1.916330 kcal Electronic energy + Delta-G solvation = -26155.392002 eV Core-core repulsion = 22604.285118 eV Total energy + Delta-G solvation = -3551.106884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97586 -39.05408 -37.85411 -34.89161 -34.70137 -33.27578 -31.11358 -30.80488 -29.92686 -27.42965 -25.70751 -25.22028 -23.70823 -22.64886 -22.31097 -21.62401 -20.83472 -20.06609 -18.58069 -17.70672 -17.39616 -16.69710 -15.93196 -15.68330 -15.40933 -15.27116 -14.94289 -14.46949 -14.16109 -13.85527 -13.79818 -13.56064 -13.40733 -12.95805 -12.73401 -12.59093 -12.50734 -12.24088 -12.10141 -11.90436 -11.59593 -11.57353 -11.48374 -11.40077 -11.14835 -11.02520 -10.95032 -10.86589 -10.54598 -10.38317 -10.21318 -9.99444 -9.71131 -9.58768 -9.15938 -8.94878 -8.46139 -7.34434 -5.83342 -3.19738 2.34207 3.04309 3.31620 3.34771 3.40669 3.66259 4.17441 4.32730 4.51493 4.52589 4.74011 4.77405 4.85640 4.88019 4.89593 5.00438 5.05084 5.09531 5.14419 5.35154 5.35464 5.39185 5.40937 5.45204 5.46330 5.53507 5.53994 5.61293 5.65984 5.71277 5.79268 5.81944 5.86088 5.87805 5.97446 6.04231 6.07832 6.18897 6.29562 6.44545 6.56128 6.57830 6.68934 6.69992 6.84976 7.36088 7.94374 8.04113 8.36333 9.13921 9.86151 10.05269 11.34746 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.002714 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.886974 B =10314.386557 C =10578.896538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.019 3.981 4 N -0.505 5.505 5 C 0.040 3.960 6 C -0.127 4.127 7 C -0.128 4.128 8 C 0.053 3.947 9 H 0.101 0.899 10 C 0.500 3.500 11 O -0.542 6.542 12 N -0.719 5.719 13 C 0.130 3.870 14 C -0.123 4.123 15 H 0.090 0.910 16 C -0.166 4.166 17 C 0.173 3.827 18 H 0.071 0.929 19 N -0.730 5.730 20 C -0.247 4.247 21 H 0.092 0.908 22 C 0.006 3.994 23 N -0.932 5.932 24 Si 0.884 3.116 25 H -0.283 1.283 26 H -0.278 1.278 27 H -0.290 1.290 28 C -0.149 4.149 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.403 0.597 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.362 0.638 48 H 0.260 0.740 49 H 0.067 0.933 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.185 -22.634 -15.831 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.108 4.108 4 N -0.230 5.230 5 C -0.088 4.088 6 C -0.165 4.165 7 C -0.167 4.167 8 C -0.058 4.058 9 H 0.119 0.881 10 C 0.286 3.714 11 O -0.420 6.420 12 N -0.369 5.369 13 C 0.007 3.993 14 C -0.142 4.142 15 H 0.108 0.892 16 C -0.207 4.207 17 C 0.061 3.939 18 H 0.089 0.911 19 N -0.370 5.370 20 C -0.377 4.377 21 H 0.110 0.890 22 C -0.190 4.190 23 N -0.579 5.579 24 Si 0.715 3.285 25 H -0.210 1.210 26 H -0.204 1.204 27 H -0.216 1.216 28 C -0.188 4.188 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.238 0.762 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.195 0.805 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.853 -22.626 -15.952 27.746 hybrid contribution -0.192 -0.613 0.681 0.936 sum 1.662 -23.239 -15.271 27.856 Atomic orbital electron populations 1.21717 0.95498 1.01562 1.02055 1.21533 0.95757 0.96260 1.02191 1.22976 0.86855 0.97839 1.03132 1.64124 1.08860 1.08769 1.41249 1.23114 0.95511 0.98359 0.91806 1.22704 0.97780 0.94164 1.01877 1.22748 0.99099 0.97966 0.96883 1.22613 0.94217 0.88192 1.00819 0.88069 1.21008 0.86447 0.81597 0.82346 1.90615 1.47259 1.72120 1.32039 1.46197 1.32579 1.31738 1.26430 1.21478 0.89015 0.89975 0.98841 1.22754 0.99713 0.94436 0.97315 0.89213 1.23860 0.99820 0.96592 1.00453 1.20998 0.92233 0.95648 0.85013 0.91055 1.42520 1.81449 1.12130 1.00901 1.19110 1.37910 0.89565 0.91137 0.89026 1.24686 1.01294 0.96641 0.96409 1.69699 1.52773 1.24829 1.10575 0.86558 0.78053 0.83232 0.80687 1.21003 1.20412 1.21628 1.23464 0.96579 0.97320 1.01481 0.92662 0.92705 0.92609 0.92121 0.91560 0.91207 0.90269 0.89880 0.93040 0.90354 0.90460 0.90269 0.89995 0.76214 0.91876 0.91417 0.90980 0.91306 0.80516 0.92954 0.91427 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.07 5.77 -26.73 -0.15 -1.23 16 3 C 0.02 0.21 3.70 -3.82 -0.01 0.20 16 4 N -0.51 -5.06 5.26 -224.73 -1.18 -6.25 16 5 C 0.04 0.33 5.36 -2.30 -0.01 0.32 16 6 C -0.13 -0.90 7.08 -24.59 -0.17 -1.08 16 7 C -0.13 -1.09 6.43 -24.91 -0.16 -1.25 16 8 C 0.05 0.52 3.84 -67.88 -0.26 0.26 16 9 H 0.10 0.87 7.94 -51.93 -0.41 0.46 16 10 C 0.50 6.00 5.08 -10.98 -0.06 5.94 16 11 O -0.54 -8.10 13.82 5.56 0.08 -8.02 16 12 N -0.72 -8.07 5.56 -60.29 -0.33 -8.41 16 13 C 0.13 1.60 5.51 -4.04 -0.02 1.58 16 14 C -0.12 -1.67 3.63 -89.80 -0.33 -2.00 16 15 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.17 -2.56 7.43 -25.92 -0.19 -2.75 16 17 C 0.17 3.15 4.56 -67.12 -0.31 2.85 16 18 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 19 N -0.73 -16.64 5.11 -52.64 -0.27 -16.91 16 20 C -0.25 -6.82 10.45 -15.06 -0.16 -6.98 16 21 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 22 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 23 N -0.93 -28.84 13.97 55.49 0.78 -28.06 16 24 Si 0.88 21.63 27.74 -169.99 -4.72 16.92 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.34 6.51 56.52 0.37 -5.97 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C -0.15 -2.17 7.39 -25.92 -0.19 -2.36 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.51 6.90 -51.93 -0.36 0.15 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.83 7.64 -51.93 -0.40 0.44 16 35 H 0.08 1.04 5.34 -51.93 -0.28 0.76 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.47 7.48 -51.93 -0.39 0.08 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.80 7.52 -51.93 -0.39 0.41 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.40 3.93 8.32 -40.82 -0.34 3.59 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.87 7.84 -51.93 -0.41 0.46 16 45 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.36 8.09 5.75 -40.82 -0.23 7.86 16 48 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 49 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 50 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 386.72 15.07 5.83 5.83 Total: -1.00 -31.58 386.72 -10.70 -42.28 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -9.12 Total: 9.98 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -1.76 Total: -7.35 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -1.01 Total: -59.62 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.92 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.58 -10.70 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086381972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.363 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds